data_5NU8 # _model_server_result.job_id npOpqk4BumnX9XOnjyj7BA _model_server_result.datetime_utc '2024-11-05 01:25:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5NU8 # _exptl.entry_id 5NU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NU8 _cell.length_a 102.79 _cell.length_b 102.79 _cell.length_c 73.634 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 120 A CYS 120 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 260 n n C1 O2 PLM doub 261 n n C1 C2 PLM sing 262 n n O1 H PLM sing 263 n n C2 C3 PLM sing 264 n n C2 H21 PLM sing 265 n n C2 H22 PLM sing 266 n n C3 C4 PLM sing 267 n n C3 H31 PLM sing 268 n n C3 H32 PLM sing 269 n n C4 C5 PLM sing 270 n n C4 H41 PLM sing 271 n n C4 H42 PLM sing 272 n n C5 C6 PLM sing 273 n n C5 H51 PLM sing 274 n n C5 H52 PLM sing 275 n n C6 C7 PLM sing 276 n n C6 H61 PLM sing 277 n n C6 H62 PLM sing 278 n n C7 C8 PLM sing 279 n n C7 H71 PLM sing 280 n n C7 H72 PLM sing 281 n n C8 C9 PLM sing 282 n n C8 H81 PLM sing 283 n n C8 H82 PLM sing 284 n n C9 CA PLM sing 285 n n C9 H91 PLM sing 286 n n C9 H92 PLM sing 287 n n CA CB PLM sing 288 n n CA HA1 PLM sing 289 n n CA HA2 PLM sing 290 n n CB CC PLM sing 291 n n CB HB1 PLM sing 292 n n CB HB2 PLM sing 293 n n CC CD PLM sing 294 n n CC HC1 PLM sing 295 n n CC HC2 PLM sing 296 n n CD CE PLM sing 297 n n CD HD1 PLM sing 298 n n CD HD2 PLM sing 299 n n CE CF PLM sing 300 n n CE HE1 PLM sing 301 n n CE HE2 PLM sing 302 n n CF CG PLM sing 303 n n CF HF1 PLM sing 304 n n CF HF2 PLM sing 305 n n CG HG1 PLM sing 306 n n CG HG2 PLM sing 307 n n CG HG3 PLM sing 308 n n # _atom_sites.entry_id 5NU8 _atom_sites.fract_transf_matrix[1][1] 0.009729 _atom_sites.fract_transf_matrix[1][2] 0.005617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 183 PLM PLM . C 3 CL A 1 202 193 CL CL . D 3 CL A 1 203 194 CL CL . E 4 HOH A 1 301 304 HOH HOH . E 4 HOH A 2 302 254 HOH HOH . E 4 HOH A 3 303 207 HOH HOH . E 4 HOH A 4 304 228 HOH HOH . E 4 HOH A 5 305 249 HOH HOH . E 4 HOH A 6 306 305 HOH HOH . E 4 HOH A 7 307 277 HOH HOH . E 4 HOH A 8 308 300 HOH HOH . E 4 HOH A 9 309 208 HOH HOH . E 4 HOH A 10 310 257 HOH HOH . E 4 HOH A 11 311 206 HOH HOH . E 4 HOH A 12 312 274 HOH HOH . E 4 HOH A 13 313 280 HOH HOH . E 4 HOH A 14 314 235 HOH HOH . E 4 HOH A 15 315 238 HOH HOH . E 4 HOH A 16 316 232 HOH HOH . E 4 HOH A 17 317 234 HOH HOH . E 4 HOH A 18 318 267 HOH HOH . E 4 HOH A 19 319 248 HOH HOH . E 4 HOH A 20 320 209 HOH HOH . E 4 HOH A 21 321 250 HOH HOH . E 4 HOH A 22 322 236 HOH HOH . E 4 HOH A 23 323 219 HOH HOH . E 4 HOH A 24 324 260 HOH HOH . E 4 HOH A 25 325 210 HOH HOH . E 4 HOH A 26 326 297 HOH HOH . E 4 HOH A 27 327 259 HOH HOH . E 4 HOH A 28 328 282 HOH HOH . E 4 HOH A 29 329 229 HOH HOH . E 4 HOH A 30 330 215 HOH HOH . E 4 HOH A 31 331 268 HOH HOH . E 4 HOH A 32 332 247 HOH HOH . E 4 HOH A 33 333 309 HOH HOH . E 4 HOH A 34 334 284 HOH HOH . E 4 HOH A 35 335 278 HOH HOH . E 4 HOH A 36 336 286 HOH HOH . E 4 HOH A 37 337 233 HOH HOH . E 4 HOH A 38 338 227 HOH HOH . E 4 HOH A 39 339 222 HOH HOH . E 4 HOH A 40 340 272 HOH HOH . E 4 HOH A 41 341 201 HOH HOH . E 4 HOH A 42 342 231 HOH HOH . E 4 HOH A 43 343 225 HOH HOH . E 4 HOH A 44 344 266 HOH HOH . E 4 HOH A 45 345 262 HOH HOH . E 4 HOH A 46 346 245 HOH HOH . E 4 HOH A 47 347 216 HOH HOH . E 4 HOH A 48 348 270 HOH HOH . E 4 HOH A 49 349 295 HOH HOH . E 4 HOH A 50 350 313 HOH HOH . E 4 HOH A 51 351 281 HOH HOH . E 4 HOH A 52 352 203 HOH HOH . E 4 HOH A 53 353 275 HOH HOH . E 4 HOH A 54 354 255 HOH HOH . E 4 HOH A 55 355 244 HOH HOH . E 4 HOH A 56 356 230 HOH HOH . E 4 HOH A 57 357 220 HOH HOH . E 4 HOH A 58 358 213 HOH HOH . E 4 HOH A 59 359 285 HOH HOH . E 4 HOH A 60 360 258 HOH HOH . E 4 HOH A 61 361 276 HOH HOH . E 4 HOH A 62 362 252 HOH HOH . E 4 HOH A 63 363 202 HOH HOH . E 4 HOH A 64 364 246 HOH HOH . E 4 HOH A 65 365 243 HOH HOH . E 4 HOH A 66 366 253 HOH HOH . E 4 HOH A 67 367 204 HOH HOH . E 4 HOH A 68 368 205 HOH HOH . E 4 HOH A 69 369 264 HOH HOH . E 4 HOH A 70 370 211 HOH HOH . E 4 HOH A 71 371 251 HOH HOH . E 4 HOH A 72 372 241 HOH HOH . E 4 HOH A 73 373 242 HOH HOH . E 4 HOH A 74 374 226 HOH HOH . E 4 HOH A 75 375 239 HOH HOH . E 4 HOH A 76 376 269 HOH HOH . E 4 HOH A 77 377 293 HOH HOH . E 4 HOH A 78 378 221 HOH HOH . E 4 HOH A 79 379 223 HOH HOH . E 4 HOH A 80 380 279 HOH HOH . E 4 HOH A 81 381 271 HOH HOH . E 4 HOH A 82 382 212 HOH HOH . E 4 HOH A 83 383 263 HOH HOH . E 4 HOH A 84 384 312 HOH HOH . E 4 HOH A 85 385 311 HOH HOH . E 4 HOH A 86 386 214 HOH HOH . E 4 HOH A 87 387 218 HOH HOH . E 4 HOH A 88 388 292 HOH HOH . E 4 HOH A 89 389 296 HOH HOH . E 4 HOH A 90 390 224 HOH HOH . E 4 HOH A 91 391 291 HOH HOH . E 4 HOH A 92 392 294 HOH HOH . E 4 HOH A 93 393 299 HOH HOH . E 4 HOH A 94 394 287 HOH HOH . E 4 HOH A 95 395 237 HOH HOH . E 4 HOH A 96 396 273 HOH HOH . E 4 HOH A 97 397 283 HOH HOH . E 4 HOH A 98 398 301 HOH HOH . E 4 HOH A 99 399 307 HOH HOH . E 4 HOH A 100 400 310 HOH HOH . E 4 HOH A 101 401 261 HOH HOH . E 4 HOH A 102 402 288 HOH HOH . E 4 HOH A 103 403 308 HOH HOH . E 4 HOH A 104 404 302 HOH HOH . E 4 HOH A 105 405 298 HOH HOH . E 4 HOH A 106 406 303 HOH HOH . E 4 HOH A 107 407 290 HOH HOH . E 4 HOH A 108 408 217 HOH HOH . E 4 HOH A 109 409 289 HOH HOH . E 4 HOH A 110 410 306 HOH HOH . E 4 HOH A 111 411 256 HOH HOH . E 4 HOH A 112 412 265 HOH HOH . E 4 HOH A 113 413 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . B 2 34.809 25.481 -2.592 1 32.74 ? C1 PLM 201 A 1 HETATM 2 O O1 PLM . . . B 2 34.609 26.684 -2.867 1 35.37 ? O1 PLM 201 A 1 HETATM 3 O O2 PLM . . . B 2 35.225 24.615 -3.391 1 39.95 ? O2 PLM 201 A 1 HETATM 4 C C2 PLM . . . B 2 34.519 25.049 -1.169 1 40.49 ? C2 PLM 201 A 1 HETATM 5 C C3 PLM . . . B 2 35.107 23.658 -1.002 1 45.63 ? C3 PLM 201 A 1 HETATM 6 C C4 PLM . . . B 2 36.607 23.769 -1.209 1 41.71 ? C4 PLM 201 A 1 HETATM 7 C C5 PLM . . . B 2 37.211 22.899 -0.13 1 52.89 ? C5 PLM 201 A 1 HETATM 8 C C6 PLM . . . B 2 36.938 21.445 -0.493 1 46.93 ? C6 PLM 201 A 1 HETATM 9 C C7 PLM . . . B 2 38.287 20.774 -0.286 1 44.9 ? C7 PLM 201 A 1 HETATM 10 C C8 PLM . . . B 2 38.189 19.369 -0.869 1 50.11 ? C8 PLM 201 A 1 HETATM 11 C C9 PLM . . . B 2 38.999 18.544 0.1 1 47.35 ? C9 PLM 201 A 1 HETATM 12 C CA PLM . . . B 2 38.465 17.121 0.066 1 59.15 ? CA PLM 201 A 1 HETATM 13 C CB PLM . . . B 2 37.158 17.154 0.811 1 58.96 ? CB PLM 201 A 1 HETATM 14 C CC PLM . . . B 2 36.302 16.146 0.081 1 51.73 ? CC PLM 201 A 1 HETATM 15 C CD PLM . . . B 2 34.902 16.667 0.296 1 51.81 ? CD PLM 201 A 1 HETATM 16 C CE PLM . . . B 2 34.415 16.895 -1.101 1 45.69 ? CE PLM 201 A 1 HETATM 17 C CF PLM . . . B 2 33.899 18.319 -1.151 1 44.57 ? CF PLM 201 A 1 HETATM 18 C CG PLM . . . B 2 33.439 18.656 0.272 1 41.36 ? CG PLM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #