data_5NUD # _model_server_result.job_id 4i17FUr31_idXy8GDisR4Q _model_server_result.datetime_utc '2024-10-18 20:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 5NUD # _exptl.entry_id 5NUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.639 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloranyl-~{N}-(3-nitropyridin-2-yl)-5-(trifluoromethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NUD _cell.length_a 82.899 _cell.length_b 87.054 _cell.length_c 182.052 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 106 A CYS 552 1_555 C C7 99K . A 99K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.69 ? covale ? covale2 B SG CYS 106 B CYS 552 1_555 D C7 99K . B 99K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? # _chem_comp.formula 'C11 H6 Cl F3 N4 O2' _chem_comp.formula_weight 318.639 _chem_comp.id 99K _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloranyl-~{N}-(3-nitropyridin-2-yl)-5-(trifluoromethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NUD _atom_sites.fract_transf_matrix[1][1] 0.012063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 99K A 1 801 1 99K LI1 . D 2 99K B 1 801 1 99K LI1 . E 3 HOH A 1 901 131 HOH HOH . E 3 HOH A 2 902 168 HOH HOH . E 3 HOH A 3 903 121 HOH HOH . E 3 HOH A 4 904 85 HOH HOH . E 3 HOH A 5 905 147 HOH HOH . E 3 HOH A 6 906 124 HOH HOH . E 3 HOH A 7 907 4 HOH HOH . E 3 HOH A 8 908 126 HOH HOH . E 3 HOH A 9 909 136 HOH HOH . E 3 HOH A 10 910 95 HOH HOH . E 3 HOH A 11 911 45 HOH HOH . E 3 HOH A 12 912 84 HOH HOH . E 3 HOH A 13 913 46 HOH HOH . E 3 HOH A 14 914 18 HOH HOH . E 3 HOH A 15 915 103 HOH HOH . E 3 HOH A 16 916 76 HOH HOH . E 3 HOH A 17 917 22 HOH HOH . E 3 HOH A 18 918 61 HOH HOH . E 3 HOH A 19 919 14 HOH HOH . E 3 HOH A 20 920 35 HOH HOH . E 3 HOH A 21 921 40 HOH HOH . E 3 HOH A 22 922 59 HOH HOH . E 3 HOH A 23 923 148 HOH HOH . E 3 HOH A 24 924 72 HOH HOH . E 3 HOH A 25 925 29 HOH HOH . E 3 HOH A 26 926 51 HOH HOH . E 3 HOH A 27 927 17 HOH HOH . E 3 HOH A 28 928 142 HOH HOH . E 3 HOH A 29 929 20 HOH HOH . E 3 HOH A 30 930 26 HOH HOH . E 3 HOH A 31 931 25 HOH HOH . E 3 HOH A 32 932 27 HOH HOH . E 3 HOH A 33 933 104 HOH HOH . E 3 HOH A 34 934 8 HOH HOH . E 3 HOH A 35 935 5 HOH HOH . E 3 HOH A 36 936 58 HOH HOH . E 3 HOH A 37 937 161 HOH HOH . E 3 HOH A 38 938 33 HOH HOH . E 3 HOH A 39 939 156 HOH HOH . E 3 HOH A 40 940 86 HOH HOH . E 3 HOH A 41 941 24 HOH HOH . E 3 HOH A 42 942 39 HOH HOH . E 3 HOH A 43 943 57 HOH HOH . E 3 HOH A 44 944 135 HOH HOH . E 3 HOH A 45 945 10 HOH HOH . E 3 HOH A 46 946 149 HOH HOH . E 3 HOH A 47 947 69 HOH HOH . E 3 HOH A 48 948 44 HOH HOH . E 3 HOH A 49 949 36 HOH HOH . E 3 HOH A 50 950 49 HOH HOH . E 3 HOH A 51 951 137 HOH HOH . E 3 HOH A 52 952 55 HOH HOH . E 3 HOH A 53 953 42 HOH HOH . E 3 HOH A 54 954 125 HOH HOH . E 3 HOH A 55 955 73 HOH HOH . E 3 HOH A 56 956 1 HOH HOH . E 3 HOH A 57 957 75 HOH HOH . E 3 HOH A 58 958 91 HOH HOH . E 3 HOH A 59 959 38 HOH HOH . E 3 HOH A 60 960 16 HOH HOH . E 3 HOH A 61 961 23 HOH HOH . E 3 HOH A 62 962 34 HOH HOH . E 3 HOH A 63 963 112 HOH HOH . E 3 HOH A 64 964 160 HOH HOH . E 3 HOH A 65 965 138 HOH HOH . E 3 HOH A 66 966 144 HOH HOH . E 3 HOH A 67 967 133 HOH HOH . E 3 HOH A 68 968 157 HOH HOH . E 3 HOH A 69 969 106 HOH HOH . E 3 HOH A 70 970 43 HOH HOH . E 3 HOH A 71 971 154 HOH HOH . E 3 HOH A 72 972 120 HOH HOH . E 3 HOH A 73 973 79 HOH HOH . E 3 HOH A 74 974 114 HOH HOH . E 3 HOH A 75 975 111 HOH HOH . E 3 HOH A 76 976 155 HOH HOH . E 3 HOH A 77 977 141 HOH HOH . E 3 HOH A 78 978 152 HOH HOH . E 3 HOH A 79 979 164 HOH HOH . E 3 HOH A 80 980 143 HOH HOH . F 3 HOH B 1 901 94 HOH HOH . F 3 HOH B 2 902 93 HOH HOH . F 3 HOH B 3 903 2 HOH HOH . F 3 HOH B 4 904 146 HOH HOH . F 3 HOH B 5 905 13 HOH HOH . F 3 HOH B 6 906 165 HOH HOH . F 3 HOH B 7 907 100 HOH HOH . F 3 HOH B 8 908 87 HOH HOH . F 3 HOH B 9 909 66 HOH HOH . F 3 HOH B 10 910 145 HOH HOH . F 3 HOH B 11 911 63 HOH HOH . F 3 HOH B 12 912 3 HOH HOH . F 3 HOH B 13 913 140 HOH HOH . F 3 HOH B 14 914 11 HOH HOH . F 3 HOH B 15 915 68 HOH HOH . F 3 HOH B 16 916 77 HOH HOH . F 3 HOH B 17 917 127 HOH HOH . F 3 HOH B 18 918 153 HOH HOH . F 3 HOH B 19 919 107 HOH HOH . F 3 HOH B 20 920 47 HOH HOH . F 3 HOH B 21 921 9 HOH HOH . F 3 HOH B 22 922 67 HOH HOH . F 3 HOH B 23 923 122 HOH HOH . F 3 HOH B 24 924 101 HOH HOH . F 3 HOH B 25 925 6 HOH HOH . F 3 HOH B 26 926 62 HOH HOH . F 3 HOH B 27 927 7 HOH HOH . F 3 HOH B 28 928 97 HOH HOH . F 3 HOH B 29 929 81 HOH HOH . F 3 HOH B 30 930 113 HOH HOH . F 3 HOH B 31 931 48 HOH HOH . F 3 HOH B 32 932 28 HOH HOH . F 3 HOH B 33 933 31 HOH HOH . F 3 HOH B 34 934 54 HOH HOH . F 3 HOH B 35 935 130 HOH HOH . F 3 HOH B 36 936 15 HOH HOH . F 3 HOH B 37 937 65 HOH HOH . F 3 HOH B 38 938 129 HOH HOH . F 3 HOH B 39 939 78 HOH HOH . F 3 HOH B 40 940 41 HOH HOH . F 3 HOH B 41 941 50 HOH HOH . F 3 HOH B 42 942 64 HOH HOH . F 3 HOH B 43 943 163 HOH HOH . F 3 HOH B 44 944 128 HOH HOH . F 3 HOH B 45 945 88 HOH HOH . F 3 HOH B 46 946 71 HOH HOH . F 3 HOH B 47 947 109 HOH HOH . F 3 HOH B 48 948 99 HOH HOH . F 3 HOH B 49 949 123 HOH HOH . F 3 HOH B 50 950 105 HOH HOH . F 3 HOH B 51 951 110 HOH HOH . F 3 HOH B 52 952 74 HOH HOH . F 3 HOH B 53 953 32 HOH HOH . F 3 HOH B 54 954 150 HOH HOH . F 3 HOH B 55 955 96 HOH HOH . F 3 HOH B 56 956 82 HOH HOH . F 3 HOH B 57 957 92 HOH HOH . F 3 HOH B 58 958 12 HOH HOH . F 3 HOH B 59 959 90 HOH HOH . F 3 HOH B 60 960 19 HOH HOH . F 3 HOH B 61 961 98 HOH HOH . F 3 HOH B 62 962 37 HOH HOH . F 3 HOH B 63 963 167 HOH HOH . F 3 HOH B 64 964 30 HOH HOH . F 3 HOH B 65 965 134 HOH HOH . F 3 HOH B 66 966 52 HOH HOH . F 3 HOH B 67 967 132 HOH HOH . F 3 HOH B 68 968 166 HOH HOH . F 3 HOH B 69 969 60 HOH HOH . F 3 HOH B 70 970 21 HOH HOH . F 3 HOH B 71 971 56 HOH HOH . F 3 HOH B 72 972 89 HOH HOH . F 3 HOH B 73 973 108 HOH HOH . F 3 HOH B 74 974 139 HOH HOH . F 3 HOH B 75 975 53 HOH HOH . F 3 HOH B 76 976 80 HOH HOH . F 3 HOH B 77 977 70 HOH HOH . F 3 HOH B 78 978 151 HOH HOH . F 3 HOH B 79 979 159 HOH HOH . F 3 HOH B 80 980 162 HOH HOH . F 3 HOH B 81 981 83 HOH HOH . F 3 HOH B 82 982 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 99K . . . C 2 25.071 0.945 -53.4 1 71.62 ? O1 99K 801 A 1 HETATM 2 O O3 99K . . . C 2 24.788 2.696 -54.758 1 74.17 ? O3 99K 801 A 1 HETATM 3 C C11 99K . . . C 2 24.39 -2.655 -54.173 1 56 ? C11 99K 801 A 1 HETATM 4 C C13 99K . . . C 2 23.754 -4.908 -54.627 1 54.8 ? C13 99K 801 A 1 HETATM 5 C C14 99K . . . C 2 24.733 -5.426 -53.766 1 54.94 ? C14 99K 801 A 1 HETATM 6 C C15 99K . . . C 2 25.543 -4.506 -53.091 1 58.88 ? C15 99K 801 A 1 HETATM 7 C C16 99K . . . C 2 25.36 -3.127 -53.268 1 61.61 ? C16 99K 801 A 1 HETATM 8 C C18 99K . . . C 2 24.961 -6.931 -53.577 1 51.07 ? C18 99K 801 A 1 HETATM 9 N N2 99K . . . C 2 24.623 1.5 -54.612 1 69.62 ? N2 99K 801 A 1 HETATM 10 C C4 99K . . . C 2 23.969 0.771 -55.561 1 61.24 ? C4 99K 801 A 1 HETATM 11 C C5 99K . . . C 2 23.491 1.434 -56.717 1 57.11 ? C5 99K 801 A 1 HETATM 12 C C6 99K . . . C 2 22.785 0.756 -57.711 1 54.17 ? C6 99K 801 A 1 HETATM 13 C C7 99K . . . C 2 22.569 -0.611 -57.514 1 53.76 ? C7 99K 801 A 1 HETATM 14 N N8 99K . . . C 2 23.043 -1.244 -56.416 1 54.79 ? N8 99K 801 A 1 HETATM 15 C C9 99K . . . C 2 23.738 -0.624 -55.43 1 56.74 ? C9 99K 801 A 1 HETATM 16 N N10 99K . . . C 2 24.172 -1.318 -54.331 1 54.93 ? N10 99K 801 A 1 HETATM 17 N N12 99K . . . C 2 23.603 -3.574 -54.78 1 54.76 ? N12 99K 801 A 1 HETATM 18 CL CL 99K . . . C 2 26.401 -2.059 -52.341 1 70.62 ? CL 99K 801 A 1 HETATM 19 F F19 99K . . . C 2 23.93 -7.665 -54.049 1 51.69 ? F19 99K 801 A 1 HETATM 20 F F20 99K . . . C 2 26.055 -7.292 -54.274 1 47.68 ? F20 99K 801 A 1 HETATM 21 F F21 99K . . . C 2 25.163 -7.265 -52.276 1 52.43 ? F21 99K 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #