data_5NUD
#
_model_server_result.job_id            '_R-fhNqTeCTWk_RsN4gv6w' 
_model_server_result.datetime_utc      '2024-11-22 07:39:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    5NUD 
#
_exptl.entry_id    5NUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.639 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-chloranyl-~{N}-(3-nitropyridin-2-yl)-5-(trifluoromethyl)pyridin-2-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NUD 
_cell.length_a            82.899 
_cell.length_b            87.054 
_cell.length_c            182.052 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 106 A CYS 552 1_555 C C7 99K . A 99K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.69 ? 
covale ? covale2 B SG CYS 106 B CYS 552 1_555 D C7 99K . B 99K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? 
#
_chem_comp.formula           'C11 H6 Cl F3 N4 O2' 
_chem_comp.formula_weight    318.639 
_chem_comp.id                99K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-chloranyl-~{N}-(3-nitropyridin-2-yl)-5-(trifluoromethyl)pyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C7 99K doub 1 n y 
C6 C5 99K sing 2 n y 
C7 N8 99K sing 3 n y 
C5 C4 99K doub 4 n y 
N8 C9 99K doub 5 n y 
C4 C9 99K sing 6 n y 
C4 N2 99K sing 7 n n 
C9 N10 99K sing 8 n n 
N12 C13 99K doub 9 n y 
N12 C11 99K sing 10 n y 
O3 N2 99K doub 11 n n 
C13 C14 99K sing 12 n y 
N2 O1 99K sing 13 n n 
N10 C11 99K sing 14 n n 
F20 C18 99K sing 15 n n 
C11 C16 99K doub 16 n y 
F19 C18 99K sing 17 n n 
C14 C18 99K sing 18 n n 
C14 C15 99K doub 19 n y 
C18 F21 99K sing 20 n n 
C16 C15 99K sing 21 n y 
C16 CL 99K sing 22 n n 
C13 H1 99K sing 23 n n 
C15 H2 99K sing 24 n n 
C5 H3 99K sing 25 n n 
C6 H4 99K sing 26 n n 
C7 H5 99K sing 27 n n 
N10 H6 99K sing 28 n n 
#
_atom_sites.entry_id                     5NUD 
_atom_sites.fract_transf_matrix[1][1]    0.012063 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011487 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005493 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 99K A 1 801 1 99K LI1 . 
D 2 99K B 1 801 1 99K LI1 . 
E 3 HOH A 1 901 131 HOH HOH . 
E 3 HOH A 2 902 168 HOH HOH . 
E 3 HOH A 3 903 121 HOH HOH . 
E 3 HOH A 4 904 85 HOH HOH . 
E 3 HOH A 5 905 147 HOH HOH . 
E 3 HOH A 6 906 124 HOH HOH . 
E 3 HOH A 7 907 4 HOH HOH . 
E 3 HOH A 8 908 126 HOH HOH . 
E 3 HOH A 9 909 136 HOH HOH . 
E 3 HOH A 10 910 95 HOH HOH . 
E 3 HOH A 11 911 45 HOH HOH . 
E 3 HOH A 12 912 84 HOH HOH . 
E 3 HOH A 13 913 46 HOH HOH . 
E 3 HOH A 14 914 18 HOH HOH . 
E 3 HOH A 15 915 103 HOH HOH . 
E 3 HOH A 16 916 76 HOH HOH . 
E 3 HOH A 17 917 22 HOH HOH . 
E 3 HOH A 18 918 61 HOH HOH . 
E 3 HOH A 19 919 14 HOH HOH . 
E 3 HOH A 20 920 35 HOH HOH . 
E 3 HOH A 21 921 40 HOH HOH . 
E 3 HOH A 22 922 59 HOH HOH . 
E 3 HOH A 23 923 148 HOH HOH . 
E 3 HOH A 24 924 72 HOH HOH . 
E 3 HOH A 25 925 29 HOH HOH . 
E 3 HOH A 26 926 51 HOH HOH . 
E 3 HOH A 27 927 17 HOH HOH . 
E 3 HOH A 28 928 142 HOH HOH . 
E 3 HOH A 29 929 20 HOH HOH . 
E 3 HOH A 30 930 26 HOH HOH . 
E 3 HOH A 31 931 25 HOH HOH . 
E 3 HOH A 32 932 27 HOH HOH . 
E 3 HOH A 33 933 104 HOH HOH . 
E 3 HOH A 34 934 8 HOH HOH . 
E 3 HOH A 35 935 5 HOH HOH . 
E 3 HOH A 36 936 58 HOH HOH . 
E 3 HOH A 37 937 161 HOH HOH . 
E 3 HOH A 38 938 33 HOH HOH . 
E 3 HOH A 39 939 156 HOH HOH . 
E 3 HOH A 40 940 86 HOH HOH . 
E 3 HOH A 41 941 24 HOH HOH . 
E 3 HOH A 42 942 39 HOH HOH . 
E 3 HOH A 43 943 57 HOH HOH . 
E 3 HOH A 44 944 135 HOH HOH . 
E 3 HOH A 45 945 10 HOH HOH . 
E 3 HOH A 46 946 149 HOH HOH . 
E 3 HOH A 47 947 69 HOH HOH . 
E 3 HOH A 48 948 44 HOH HOH . 
E 3 HOH A 49 949 36 HOH HOH . 
E 3 HOH A 50 950 49 HOH HOH . 
E 3 HOH A 51 951 137 HOH HOH . 
E 3 HOH A 52 952 55 HOH HOH . 
E 3 HOH A 53 953 42 HOH HOH . 
E 3 HOH A 54 954 125 HOH HOH . 
E 3 HOH A 55 955 73 HOH HOH . 
E 3 HOH A 56 956 1 HOH HOH . 
E 3 HOH A 57 957 75 HOH HOH . 
E 3 HOH A 58 958 91 HOH HOH . 
E 3 HOH A 59 959 38 HOH HOH . 
E 3 HOH A 60 960 16 HOH HOH . 
E 3 HOH A 61 961 23 HOH HOH . 
E 3 HOH A 62 962 34 HOH HOH . 
E 3 HOH A 63 963 112 HOH HOH . 
E 3 HOH A 64 964 160 HOH HOH . 
E 3 HOH A 65 965 138 HOH HOH . 
E 3 HOH A 66 966 144 HOH HOH . 
E 3 HOH A 67 967 133 HOH HOH . 
E 3 HOH A 68 968 157 HOH HOH . 
E 3 HOH A 69 969 106 HOH HOH . 
E 3 HOH A 70 970 43 HOH HOH . 
E 3 HOH A 71 971 154 HOH HOH . 
E 3 HOH A 72 972 120 HOH HOH . 
E 3 HOH A 73 973 79 HOH HOH . 
E 3 HOH A 74 974 114 HOH HOH . 
E 3 HOH A 75 975 111 HOH HOH . 
E 3 HOH A 76 976 155 HOH HOH . 
E 3 HOH A 77 977 141 HOH HOH . 
E 3 HOH A 78 978 152 HOH HOH . 
E 3 HOH A 79 979 164 HOH HOH . 
E 3 HOH A 80 980 143 HOH HOH . 
F 3 HOH B 1 901 94 HOH HOH . 
F 3 HOH B 2 902 93 HOH HOH . 
F 3 HOH B 3 903 2 HOH HOH . 
F 3 HOH B 4 904 146 HOH HOH . 
F 3 HOH B 5 905 13 HOH HOH . 
F 3 HOH B 6 906 165 HOH HOH . 
F 3 HOH B 7 907 100 HOH HOH . 
F 3 HOH B 8 908 87 HOH HOH . 
F 3 HOH B 9 909 66 HOH HOH . 
F 3 HOH B 10 910 145 HOH HOH . 
F 3 HOH B 11 911 63 HOH HOH . 
F 3 HOH B 12 912 3 HOH HOH . 
F 3 HOH B 13 913 140 HOH HOH . 
F 3 HOH B 14 914 11 HOH HOH . 
F 3 HOH B 15 915 68 HOH HOH . 
F 3 HOH B 16 916 77 HOH HOH . 
F 3 HOH B 17 917 127 HOH HOH . 
F 3 HOH B 18 918 153 HOH HOH . 
F 3 HOH B 19 919 107 HOH HOH . 
F 3 HOH B 20 920 47 HOH HOH . 
F 3 HOH B 21 921 9 HOH HOH . 
F 3 HOH B 22 922 67 HOH HOH . 
F 3 HOH B 23 923 122 HOH HOH . 
F 3 HOH B 24 924 101 HOH HOH . 
F 3 HOH B 25 925 6 HOH HOH . 
F 3 HOH B 26 926 62 HOH HOH . 
F 3 HOH B 27 927 7 HOH HOH . 
F 3 HOH B 28 928 97 HOH HOH . 
F 3 HOH B 29 929 81 HOH HOH . 
F 3 HOH B 30 930 113 HOH HOH . 
F 3 HOH B 31 931 48 HOH HOH . 
F 3 HOH B 32 932 28 HOH HOH . 
F 3 HOH B 33 933 31 HOH HOH . 
F 3 HOH B 34 934 54 HOH HOH . 
F 3 HOH B 35 935 130 HOH HOH . 
F 3 HOH B 36 936 15 HOH HOH . 
F 3 HOH B 37 937 65 HOH HOH . 
F 3 HOH B 38 938 129 HOH HOH . 
F 3 HOH B 39 939 78 HOH HOH . 
F 3 HOH B 40 940 41 HOH HOH . 
F 3 HOH B 41 941 50 HOH HOH . 
F 3 HOH B 42 942 64 HOH HOH . 
F 3 HOH B 43 943 163 HOH HOH . 
F 3 HOH B 44 944 128 HOH HOH . 
F 3 HOH B 45 945 88 HOH HOH . 
F 3 HOH B 46 946 71 HOH HOH . 
F 3 HOH B 47 947 109 HOH HOH . 
F 3 HOH B 48 948 99 HOH HOH . 
F 3 HOH B 49 949 123 HOH HOH . 
F 3 HOH B 50 950 105 HOH HOH . 
F 3 HOH B 51 951 110 HOH HOH . 
F 3 HOH B 52 952 74 HOH HOH . 
F 3 HOH B 53 953 32 HOH HOH . 
F 3 HOH B 54 954 150 HOH HOH . 
F 3 HOH B 55 955 96 HOH HOH . 
F 3 HOH B 56 956 82 HOH HOH . 
F 3 HOH B 57 957 92 HOH HOH . 
F 3 HOH B 58 958 12 HOH HOH . 
F 3 HOH B 59 959 90 HOH HOH . 
F 3 HOH B 60 960 19 HOH HOH . 
F 3 HOH B 61 961 98 HOH HOH . 
F 3 HOH B 62 962 37 HOH HOH . 
F 3 HOH B 63 963 167 HOH HOH . 
F 3 HOH B 64 964 30 HOH HOH . 
F 3 HOH B 65 965 134 HOH HOH . 
F 3 HOH B 66 966 52 HOH HOH . 
F 3 HOH B 67 967 132 HOH HOH . 
F 3 HOH B 68 968 166 HOH HOH . 
F 3 HOH B 69 969 60 HOH HOH . 
F 3 HOH B 70 970 21 HOH HOH . 
F 3 HOH B 71 971 56 HOH HOH . 
F 3 HOH B 72 972 89 HOH HOH . 
F 3 HOH B 73 973 108 HOH HOH . 
F 3 HOH B 74 974 139 HOH HOH . 
F 3 HOH B 75 975 53 HOH HOH . 
F 3 HOH B 76 976 80 HOH HOH . 
F 3 HOH B 77 977 70 HOH HOH . 
F 3 HOH B 78 978 151 HOH HOH . 
F 3 HOH B 79 979 159 HOH HOH . 
F 3 HOH B 80 980 162 HOH HOH . 
F 3 HOH B 81 981 83 HOH HOH . 
F 3 HOH B 82 982 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 99K . . . D 2 -2.953 -17.604 -98.217 1 72.76 ? O1 99K 801 B 1 
HETATM 2 O O3 99K . . . D 2 -4.894 -18.047 -99.233 1 75.7 ? O3 99K 801 B 1 
HETATM 3 C C11 99K . . . D 2 0.491 -18.688 -99.129 1 53.67 ? C11 99K 801 B 1 
HETATM 4 C C13 99K . . . D 2 2.647 -19.69 -99.44 1 52.54 ? C13 99K 801 B 1 
HETATM 5 C C14 99K . . . D 2 3.282 -18.608 -98.803 1 53.37 ? C14 99K 801 B 1 
HETATM 6 C C15 99K . . . D 2 2.485 -17.569 -98.316 1 54.28 ? C15 99K 801 B 1 
HETATM 7 C C16 99K . . . D 2 1.099 -17.608 -98.45 1 56.5 ? C16 99K 801 B 1 
HETATM 8 C C18 99K . . . D 2 4.793 -18.486 -98.622 1 54.67 ? C18 99K 801 B 1 
HETATM 9 N N2 99K . . . D 2 -3.693 -18.262 -99.212 1 70.63 ? N2 99K 801 B 1 
HETATM 10 C C4 99K . . . D 2 -3.102 -19.104 -100.108 1 60.54 ? C4 99K 801 B 1 
HETATM 11 C C5 99K . . . D 2 -3.906 -19.742 -101.082 1 55.53 ? C5 99K 801 B 1 
HETATM 12 C C6 99K . . . D 2 -3.339 -20.609 -102.022 1 53.15 ? C6 99K 801 B 1 
HETATM 13 C C7 99K . . . D 2 -1.953 -20.816 -101.966 1 52.33 ? C7 99K 801 B 1 
HETATM 14 N N8 99K . . . D 2 -1.197 -20.198 -101.034 1 53.99 ? N8 99K 801 B 1 
HETATM 15 C C9 99K . . . D 2 -1.7 -19.354 -100.106 1 56.09 ? C9 99K 801 B 1 
HETATM 16 N N10 99K . . . D 2 -0.871 -18.749 -99.208 1 54.26 ? N10 99K 801 B 1 
HETATM 17 N N12 99K . . . D 2 1.295 -19.698 -99.568 1 53.3 ? N12 99K 801 B 1 
HETATM 18 CL CL 99K . . . D 2 0.226 -16.247 -97.764 1 64.18 ? CL 99K 801 B 1 
HETATM 19 F F19 99K . . . D 2 5.402 -19.656 -98.91 1 55.32 ? F19 99K 801 B 1 
HETATM 20 F F20 99K . . . D 2 5.256 -17.48 -99.409 1 54.16 ? F20 99K 801 B 1 
HETATM 21 F F21 99K . . . D 2 5.108 -18.188 -97.338 1 57.38 ? F21 99K 801 B 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#