data_5NUG
#
_model_server_result.job_id            zOUpGIaifAAFkkebOThPCw 
_model_server_result.datetime_utc      '2024-11-22 14:18:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nug 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":4802}' 
#
_entry.id    5NUG 
#
_exptl.entry_id    5NUG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NUG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NUG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G 1 1 
B,H,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 2231 A SER 2231 1_555 E MG MG . A MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc2 A OE2 GLU 2344 A GLU 2344 1_555 E MG MG . A MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc3 D O1G ATP . A ATP 4802 1_555 E MG MG . A MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc4 D O3G ATP . A ATP 4802 1_555 E MG MG . A MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
metalc ? metalc5 D O2B ATP . A ATP 4802 1_555 E MG MG . A MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? 
metalc ? metalc6 D O3B ATP . A ATP 4802 1_555 E MG MG . A MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc7 B OG SER 2231 B SER 2231 1_555 J MG MG . B MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc8 B OE2 GLU 2344 B GLU 2344 1_555 J MG MG . B MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc9 I O1G ATP . B ATP 4802 1_555 J MG MG . B MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc10 I O3G ATP . B ATP 4802 1_555 J MG MG . B MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
metalc ? metalc11 I O2B ATP . B ATP 4802 1_555 J MG MG . B MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? 
metalc ? metalc12 I O3B ATP . B ATP 4802 1_555 J MG MG . B MG 4803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     5NUG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 4801 4801 ADP ADP . 
D 3 ATP A 1 4802 4803 ATP ATP . 
E 4 MG A 1 4803 4804 MG MG . 
F 2 ADP A 1 4804 4805 ADP ADP . 
G 2 ADP A 1 4805 4806 ADP ADP . 
H 2 ADP B 1 4801 4801 ADP ADP . 
I 3 ATP B 1 4802 4803 ATP ATP . 
J 4 MG B 1 4803 4804 MG MG . 
K 2 ADP B 1 4804 4805 ADP ADP . 
L 2 ADP B 1 4805 4806 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 3 12.17 38.343 -18.359 1 54.53 ? PG ATP 4802 A 1 
HETATM 2 O O1G ATP . . . D 3 11.079 37.369 -18.727 1 53.74 ? O1G ATP 4802 A 1 
HETATM 3 O O2G ATP . . . D 3 11.795 39.207 -17.193 1 53.5 ? O2G ATP 4802 A 1 
HETATM 4 O O3G ATP . . . D 3 13.519 37.694 -18.185 1 54.07 ? O3G ATP 4802 A 1 
HETATM 5 P PB ATP . . . D 3 12.676 38.858 -21.094 1 49 ? PB ATP 4802 A 1 
HETATM 6 O O1B ATP . . . D 3 14.028 39.324 -21.542 1 48.32 ? O1B ATP 4802 A 1 
HETATM 7 O O2B ATP . . . D 3 12.391 37.39 -21.12 1 50.08 ? O2B ATP 4802 A 1 
HETATM 8 O O3B ATP . . . D 3 12.329 39.377 -19.604 1 51.8 ? O3B ATP 4802 A 1 
HETATM 9 P PA ATP . . . D 3 11.356 38.666 -23.428 1 54.08 ? PA ATP 4802 A 1 
HETATM 10 O O1A ATP . . . D 3 12.721 38.347 -23.997 1 54.41 ? O1A ATP 4802 A 1 
HETATM 11 O O2A ATP . . . D 3 10.406 37.51 -23.196 1 53.74 ? O2A ATP 4802 A 1 
HETATM 12 O O3A ATP . . . D 3 11.591 39.498 -22.074 1 50.76 ? O3A ATP 4802 A 1 
HETATM 13 O O5' ATP . . . D 3 10.566 39.715 -24.351 1 53.92 ? O5' ATP 4802 A 1 
HETATM 14 C C5' ATP . . . D 3 9.31 40.234 -23.915 1 53.9 ? C5' ATP 4802 A 1 
HETATM 15 C C4' ATP . . . D 3 8.357 40.275 -25.092 1 53.99 ? C4' ATP 4802 A 1 
HETATM 16 O O4' ATP . . . D 3 8.986 41.012 -26.133 1 55.72 ? O4' ATP 4802 A 1 
HETATM 17 C C3' ATP . . . D 3 8.039 38.879 -25.601 1 55 ? C3' ATP 4802 A 1 
HETATM 18 O O3' ATP . . . D 3 6.621 38.683 -25.653 1 54.58 ? O3' ATP 4802 A 1 
HETATM 19 C C2' ATP . . . D 3 8.684 38.842 -26.967 1 57.28 ? C2' ATP 4802 A 1 
HETATM 20 O O2' ATP . . . D 3 7.886 38.181 -27.951 1 59.52 ? O2' ATP 4802 A 1 
HETATM 21 C C1' ATP . . . D 3 8.856 40.297 -27.338 1 59.63 ? C1' ATP 4802 A 1 
HETATM 22 N N9 ATP . . . D 3 10.034 40.456 -28.196 1 66.63 ? N9 ATP 4802 A 1 
HETATM 23 C C8 ATP . . . D 3 11.331 40.294 -27.899 1 70.44 ? C8 ATP 4802 A 1 
HETATM 24 N N7 ATP . . . D 3 12.112 40.534 -28.986 1 75.18 ? N7 ATP 4802 A 1 
HETATM 25 C C5 ATP . . . D 3 11.291 40.853 -29.991 1 81.25 ? C5 ATP 4802 A 1 
HETATM 26 C C6 ATP . . . D 3 11.401 41.211 -31.426 1 92.11 ? C6 ATP 4802 A 1 
HETATM 27 N N6 ATP . . . D 3 12.585 41.302 -32.053 1 91.43 ? N6 ATP 4802 A 1 
HETATM 28 N N1 ATP . . . D 3 10.257 41.464 -32.111 1 98.36 ? N1 ATP 4802 A 1 
HETATM 29 C C2 ATP . . . D 3 9.033 41.395 -31.54 1 96 ? C2 ATP 4802 A 1 
HETATM 30 N N3 ATP . . . D 3 8.86 41.065 -30.247 1 86.55 ? N3 ATP 4802 A 1 
HETATM 31 C C4 ATP . . . D 3 9.924 40.795 -29.453 1 76.56 ? C4 ATP 4802 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    80 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#