data_5NUK # _model_server_result.job_id IUO61kBiK1JgG0FNoqQ_yA _model_server_result.datetime_utc '2024-11-14 03:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nuk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5NUK # _exptl.entry_id 5NUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NUK _cell.length_a 53.16 _cell.length_b 53.16 _cell.length_c 112.619 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5NUK _atom_sites.fract_transf_matrix[1][1] 0.018811 _atom_sites.fract_transf_matrix[1][2] 0.010861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Z80 A 1 201 1 Z80 Z80 . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 GOL A 1 203 1 GOL GOL . E 5 PO4 A 1 204 1 PO4 PO4 . F 6 CL A 1 205 1 CL CL . G 7 HOH A 1 301 105 HOH HOH . G 7 HOH A 2 302 97 HOH HOH . G 7 HOH A 3 303 92 HOH HOH . G 7 HOH A 4 304 98 HOH HOH . G 7 HOH A 5 305 35 HOH HOH . G 7 HOH A 6 306 32 HOH HOH . G 7 HOH A 7 307 29 HOH HOH . G 7 HOH A 8 308 12 HOH HOH . G 7 HOH A 9 309 118 HOH HOH . G 7 HOH A 10 310 39 HOH HOH . G 7 HOH A 11 311 64 HOH HOH . G 7 HOH A 12 312 93 HOH HOH . G 7 HOH A 13 313 75 HOH HOH . G 7 HOH A 14 314 66 HOH HOH . G 7 HOH A 15 315 3 HOH HOH . G 7 HOH A 16 316 36 HOH HOH . G 7 HOH A 17 317 126 HOH HOH . G 7 HOH A 18 318 52 HOH HOH . G 7 HOH A 19 319 7 HOH HOH . G 7 HOH A 20 320 95 HOH HOH . G 7 HOH A 21 321 43 HOH HOH . G 7 HOH A 22 322 23 HOH HOH . G 7 HOH A 23 323 34 HOH HOH . G 7 HOH A 24 324 4 HOH HOH . G 7 HOH A 25 325 78 HOH HOH . G 7 HOH A 26 326 40 HOH HOH . G 7 HOH A 27 327 103 HOH HOH . G 7 HOH A 28 328 15 HOH HOH . G 7 HOH A 29 329 21 HOH HOH . G 7 HOH A 30 330 18 HOH HOH . G 7 HOH A 31 331 54 HOH HOH . G 7 HOH A 32 332 80 HOH HOH . G 7 HOH A 33 333 33 HOH HOH . G 7 HOH A 34 334 73 HOH HOH . G 7 HOH A 35 335 111 HOH HOH . G 7 HOH A 36 336 11 HOH HOH . G 7 HOH A 37 337 22 HOH HOH . G 7 HOH A 38 338 74 HOH HOH . G 7 HOH A 39 339 30 HOH HOH . G 7 HOH A 40 340 79 HOH HOH . G 7 HOH A 41 341 19 HOH HOH . G 7 HOH A 42 342 60 HOH HOH . G 7 HOH A 43 343 25 HOH HOH . G 7 HOH A 44 344 41 HOH HOH . G 7 HOH A 45 345 90 HOH HOH . G 7 HOH A 46 346 65 HOH HOH . G 7 HOH A 47 347 76 HOH HOH . G 7 HOH A 48 348 91 HOH HOH . G 7 HOH A 49 349 100 HOH HOH . G 7 HOH A 50 350 96 HOH HOH . G 7 HOH A 51 351 27 HOH HOH . G 7 HOH A 52 352 17 HOH HOH . G 7 HOH A 53 353 20 HOH HOH . G 7 HOH A 54 354 1 HOH HOH . G 7 HOH A 55 355 2 HOH HOH . G 7 HOH A 56 356 47 HOH HOH . G 7 HOH A 57 357 99 HOH HOH . G 7 HOH A 58 358 94 HOH HOH . G 7 HOH A 59 359 10 HOH HOH . G 7 HOH A 60 360 5 HOH HOH . G 7 HOH A 61 361 45 HOH HOH . G 7 HOH A 62 362 13 HOH HOH . G 7 HOH A 63 363 101 HOH HOH . G 7 HOH A 64 364 51 HOH HOH . G 7 HOH A 65 365 53 HOH HOH . G 7 HOH A 66 366 6 HOH HOH . G 7 HOH A 67 367 113 HOH HOH . G 7 HOH A 68 368 84 HOH HOH . G 7 HOH A 69 369 119 HOH HOH . G 7 HOH A 70 370 121 HOH HOH . G 7 HOH A 71 371 55 HOH HOH . G 7 HOH A 72 372 104 HOH HOH . G 7 HOH A 73 373 112 HOH HOH . G 7 HOH A 74 374 14 HOH HOH . G 7 HOH A 75 375 107 HOH HOH . G 7 HOH A 76 376 8 HOH HOH . G 7 HOH A 77 377 28 HOH HOH . G 7 HOH A 78 378 124 HOH HOH . G 7 HOH A 79 379 86 HOH HOH . G 7 HOH A 80 380 77 HOH HOH . G 7 HOH A 81 381 24 HOH HOH . G 7 HOH A 82 382 16 HOH HOH . G 7 HOH A 83 383 106 HOH HOH . G 7 HOH A 84 384 26 HOH HOH . G 7 HOH A 85 385 81 HOH HOH . G 7 HOH A 86 386 83 HOH HOH . G 7 HOH A 87 387 110 HOH HOH . G 7 HOH A 88 388 85 HOH HOH . G 7 HOH A 89 389 116 HOH HOH . G 7 HOH A 90 390 72 HOH HOH . G 7 HOH A 91 391 125 HOH HOH . G 7 HOH A 92 392 70 HOH HOH . G 7 HOH A 93 393 114 HOH HOH . G 7 HOH A 94 394 37 HOH HOH . G 7 HOH A 95 395 82 HOH HOH . G 7 HOH A 96 396 115 HOH HOH . G 7 HOH A 97 397 31 HOH HOH . G 7 HOH A 98 398 61 HOH HOH . G 7 HOH A 99 399 102 HOH HOH . G 7 HOH A 100 400 48 HOH HOH . G 7 HOH A 101 401 120 HOH HOH . G 7 HOH A 102 402 108 HOH HOH . G 7 HOH A 103 403 71 HOH HOH . G 7 HOH A 104 404 117 HOH HOH . G 7 HOH A 105 405 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -27.863 -18.155 -4.045 1 61.8 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 4 -27.094 -19.363 -4.153 1 63.57 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 4 -27.555 -17.193 -5.201 1 59.92 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 4 -26.538 -17.735 -6.061 1 61.96 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 4 -27.15 -15.814 -4.676 1 55.55 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 4 -26.1 -15.888 -3.703 1 51.7 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #