data_5NUM # _model_server_result.job_id RigaUA8O7EFuRtI2Xtx0YQ _model_server_result.datetime_utc '2024-11-09 02:17:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5num # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5NUM # _exptl.entry_id 5NUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NUM _cell.length_a 53.328 _cell.length_b 53.328 _cell.length_c 110.003 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_677 x-y+1,-y+2,-z+7/3 1 0 0 0 -1 0 0 0 -1 0 92.366805 256.673667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5NUM _atom_sites.fract_transf_matrix[1][1] 0.018752 _atom_sites.fract_transf_matrix[1][2] 0.010826 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Z80 A 1 201 1 Z80 Z80 . C 3 PO4 A 1 202 1 PO4 PO4 . D 4 HOH A 1 301 46 HOH HOH . D 4 HOH A 2 302 29 HOH HOH . D 4 HOH A 3 303 17 HOH HOH . D 4 HOH A 4 304 26 HOH HOH . D 4 HOH A 5 305 48 HOH HOH . D 4 HOH A 6 306 1 HOH HOH . D 4 HOH A 7 307 22 HOH HOH . D 4 HOH A 8 308 10 HOH HOH . D 4 HOH A 9 309 4 HOH HOH . D 4 HOH A 10 310 8 HOH HOH . D 4 HOH A 11 311 40 HOH HOH . D 4 HOH A 12 312 19 HOH HOH . D 4 HOH A 13 313 25 HOH HOH . D 4 HOH A 14 314 3 HOH HOH . D 4 HOH A 15 315 2 HOH HOH . D 4 HOH A 16 316 33 HOH HOH . D 4 HOH A 17 317 6 HOH HOH . D 4 HOH A 18 318 34 HOH HOH . D 4 HOH A 19 319 11 HOH HOH . D 4 HOH A 20 320 9 HOH HOH . D 4 HOH A 21 321 23 HOH HOH . D 4 HOH A 22 322 32 HOH HOH . D 4 HOH A 23 323 43 HOH HOH . D 4 HOH A 24 324 20 HOH HOH . D 4 HOH A 25 325 35 HOH HOH . D 4 HOH A 26 326 21 HOH HOH . D 4 HOH A 27 327 42 HOH HOH . D 4 HOH A 28 328 37 HOH HOH . D 4 HOH A 29 329 24 HOH HOH . D 4 HOH A 30 330 38 HOH HOH . D 4 HOH A 31 331 47 HOH HOH . D 4 HOH A 32 332 41 HOH HOH . D 4 HOH A 33 333 14 HOH HOH . D 4 HOH A 34 334 39 HOH HOH . D 4 HOH A 35 335 30 HOH HOH . D 4 HOH A 36 336 7 HOH HOH . D 4 HOH A 37 337 36 HOH HOH . D 4 HOH A 38 338 31 HOH HOH . D 4 HOH A 39 339 44 HOH HOH . D 4 HOH A 40 340 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 44.971 52.76 96.113 1 84.66 ? P PO4 202 A 1 HETATM 2 O O1 PO4 . . . C 3 45.171 53.092 94.644 1 79.72 ? O1 PO4 202 A 1 HETATM 3 O O2 PO4 . . . C 3 43.84 53.589 96.699 1 78.36 ? O2 PO4 202 A 1 HETATM 4 O O3 PO4 . . . C 3 44.669 51.292 96.225 1 75.23 ? O3 PO4 202 A 1 HETATM 5 O O4 PO4 . . . C 3 46.256 53.012 96.883 1 86.93 ? O4 PO4 202 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 5 #