data_5NUP
#
_model_server_result.job_id            A0Lmq6Xe6xilnWvXDpoTNQ 
_model_server_result.datetime_utc      '2024-11-28 20:19:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nup 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":405}' 
#
_entry.id    5NUP 
#
_exptl.entry_id    5NUP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NUP 
_cell.length_a            92.377 
_cell.length_b            145.24 
_cell.length_c            232.535 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NUP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 Q N N 
? 4 R N N 
? 4 BA N N 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 246 n n 
C1B O1B LMT sing 247 n n 
C1B O5B LMT sing 248 n n 
C1B H1B LMT sing 249 n n 
C2B C3B LMT sing 250 n n 
C2B O2B LMT sing 251 n n 
C2B H2B LMT sing 252 n n 
C3B C4B LMT sing 253 n n 
C3B O3B LMT sing 254 n n 
C3B H3B LMT sing 255 n n 
C4B C5B LMT sing 256 n n 
C4B O4' LMT sing 257 n n 
C4B H4B LMT sing 258 n n 
C5B C6B LMT sing 259 n n 
C5B O5B LMT sing 260 n n 
C5B H5B LMT sing 261 n n 
C6B O6B LMT sing 262 n n 
C6B "H6'2" LMT sing 263 n n 
C6B "H6'1" LMT sing 264 n n 
O1B C4' LMT sing 265 n n 
O2B H2O1 LMT sing 266 n n 
O3B H3O1 LMT sing 267 n n 
O4' H4O1 LMT sing 268 n n 
O6B H6B LMT sing 269 n n 
C1' C2' LMT sing 270 n n 
C1' O1' LMT sing 271 n n 
C1' O5' LMT sing 272 n n 
C1' H1' LMT sing 273 n n 
C2' C3' LMT sing 274 n n 
C2' O2' LMT sing 275 n n 
C2' H2' LMT sing 276 n n 
C3' C4' LMT sing 277 n n 
C3' O3' LMT sing 278 n n 
C3' H3' LMT sing 279 n n 
C4' C5' LMT sing 280 n n 
C4' H4' LMT sing 281 n n 
C5' C6' LMT sing 282 n n 
C5' O5' LMT sing 283 n n 
C5' H5' LMT sing 284 n n 
C6' O6' LMT sing 285 n n 
C6' H6D LMT sing 286 n n 
C6' H6E LMT sing 287 n n 
O1' C1 LMT sing 288 n n 
O2' H2O2 LMT sing 289 n n 
O3' H3O2 LMT sing 290 n n 
O6' H6' LMT sing 291 n n 
C1 C2 LMT sing 292 n n 
C1 H12 LMT sing 293 n n 
C1 H11 LMT sing 294 n n 
C2 C3 LMT sing 295 n n 
C2 H22 LMT sing 296 n n 
C2 H21 LMT sing 297 n n 
C3 C4 LMT sing 298 n n 
C3 H32 LMT sing 299 n n 
C3 H31 LMT sing 300 n n 
C4 C5 LMT sing 301 n n 
C4 H42 LMT sing 302 n n 
C4 H41 LMT sing 303 n n 
C5 C6 LMT sing 304 n n 
C5 H52 LMT sing 305 n n 
C5 H51 LMT sing 306 n n 
C6 C7 LMT sing 307 n n 
C6 H62 LMT sing 308 n n 
C6 H61 LMT sing 309 n n 
C7 C8 LMT sing 310 n n 
C7 H72 LMT sing 311 n n 
C7 H71 LMT sing 312 n n 
C8 C9 LMT sing 313 n n 
C8 H82 LMT sing 314 n n 
C8 H81 LMT sing 315 n n 
C9 C10 LMT sing 316 n n 
C9 H92 LMT sing 317 n n 
C9 H91 LMT sing 318 n n 
C10 C11 LMT sing 319 n n 
C10 H102 LMT sing 320 n n 
C10 H101 LMT sing 321 n n 
C11 C12 LMT sing 322 n n 
C11 H112 LMT sing 323 n n 
C11 H111 LMT sing 324 n n 
C12 H123 LMT sing 325 n n 
C12 H122 LMT sing 326 n n 
C12 H121 LMT sing 327 n n 
#
_atom_sites.entry_id                     5NUP 
_atom_sites.fract_transf_matrix[1][1]    0.010825 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0043 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 C8E A 1 401 1 C8E C8E . 
H 3 C8E A 1 402 2 C8E C8E . 
I 3 C8E A 1 403 3 C8E C8E . 
J 3 C8E A 1 404 7 C8E C8E . 
K 3 C8E A 1 405 11 C8E C8E . 
L 3 C8E A 1 406 12 C8E C8E . 
M 3 C8E B 1 401 8 C8E C8E . 
N 3 C8E B 1 402 9 C8E C8E . 
O 3 C8E B 1 403 10 C8E C8E . 
P 3 C8E B 1 404 19 C8E C8E . 
Q 4 LMT B 1 405 1 LMT LMT . 
R 4 LMT B 1 406 3 LMT LMT . 
S 3 C8E C 1 401 15 C8E C8E . 
T 3 C8E C 1 402 16 C8E C8E . 
U 3 C8E C 1 403 17 C8E C8E . 
V 3 C8E C 1 404 18 C8E C8E . 
W 3 C8E D 1 301 4 C8E C8E . 
X 3 C8E D 1 302 13 C8E C8E . 
Y 3 C8E E 1 301 5 C8E C8E . 
Z 3 C8E E 1 302 14 C8E C8E . 
AA 3 C8E F 1 301 6 C8E C8E . 
BA 4 LMT F 1 302 2 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . Q 4 -0.473 89.751 -74.868 1 94.31 ? C1B LMT 405 B 1 
HETATM 2 C C2B LMT . . . Q 4 0.883 90.352 -74.394 1 100.24 ? C2B LMT 405 B 1 
HETATM 3 C C3B LMT . . . Q 4 1.791 90.751 -75.579 1 101.54 ? C3B LMT 405 B 1 
HETATM 4 C C4B LMT . . . Q 4 1.862 89.622 -76.621 1 100.16 ? C4B LMT 405 B 1 
HETATM 5 C C5B LMT . . . Q 4 0.406 89.311 -77.004 1 100.62 ? C5B LMT 405 B 1 
HETATM 6 C C6B LMT . . . Q 4 0.354 88.331 -78.168 1 99.43 ? C6B LMT 405 B 1 
HETATM 7 O O1B LMT . . . Q 4 -1.324 90.77 -75.292 1 89.83 ? O1B LMT 405 B 1 
HETATM 8 O O2B LMT . . . Q 4 0.61 91.453 -73.606 1 102.37 ? O2B LMT 405 B 1 
HETATM 9 O O3B LMT . . . Q 4 3.03 91.139 -75.154 1 106.08 ? O3B LMT 405 B 1 
HETATM 10 O O4' LMT . . . Q 4 2.58 90.027 -77.723 1 100.07 ? O4' LMT 405 B 1 
HETATM 11 O O5B LMT . . . Q 4 -0.309 88.817 -75.894 1 95.78 ? O5B LMT 405 B 1 
HETATM 12 O O6B LMT . . . Q 4 -0.507 87.308 -77.87 1 98.14 ? O6B LMT 405 B 1 
HETATM 13 C C1' LMT . . . Q 4 -5.256 92.008 -75.247 1 83.71 ? C1' LMT 405 B 1 
HETATM 14 C C2' LMT . . . Q 4 -4.457 92.443 -73.992 1 89.23 ? C2' LMT 405 B 1 
HETATM 15 C C3' LMT . . . Q 4 -2.929 92.225 -74.215 1 83.61 ? C3' LMT 405 B 1 
HETATM 16 C C4' LMT . . . Q 4 -2.631 90.806 -74.76 1 85.99 ? C4' LMT 405 B 1 
HETATM 17 C C5' LMT . . . Q 4 -3.591 90.598 -75.947 1 84.68 ? C5' LMT 405 B 1 
HETATM 18 C C6' LMT . . . Q 4 -3.382 89.299 -76.665 1 80.1 ? C6' LMT 405 B 1 
HETATM 19 O O1' LMT . . . Q 4 -6.613 92.033 -75.034 1 76.13 ? O1' LMT 405 B 1 
HETATM 20 O O2' LMT . . . Q 4 -4.683 93.778 -73.733 1 99.14 ? O2' LMT 405 B 1 
HETATM 21 O O3' LMT . . . Q 4 -2.241 92.454 -73.053 1 77.66 ? O3' LMT 405 B 1 
HETATM 22 O O5' LMT . . . Q 4 -4.919 90.663 -75.516 1 85.87 ? O5' LMT 405 B 1 
HETATM 23 O O6' LMT . . . Q 4 -3.369 88.354 -75.674 1 77.48 ? O6' LMT 405 B 1 
HETATM 24 C C1 LMT . . . Q 4 -7.342 91.119 -75.827 1 63.05 ? C1 LMT 405 B 1 
HETATM 25 C C2 LMT . . . Q 4 -8.751 91.163 -75.316 1 51.63 ? C2 LMT 405 B 1 
HETATM 26 C C3 LMT . . . Q 4 -9.797 91.238 -76.372 1 41.15 ? C3 LMT 405 B 1 
HETATM 27 C C4 LMT . . . Q 4 -11.059 90.608 -75.851 1 40.26 ? C4 LMT 405 B 1 
HETATM 28 C C5 LMT . . . Q 4 -12.116 90.787 -76.888 1 41.71 ? C5 LMT 405 B 1 
HETATM 29 C C6 LMT . . . Q 4 -13.436 90.194 -76.516 1 41.56 ? C6 LMT 405 B 1 
HETATM 30 C C7 LMT . . . Q 4 -13.92 89.392 -77.696 1 48.08 ? C7 LMT 405 B 1 
HETATM 31 C C8 LMT . . . Q 4 -15.373 89.649 -77.95 1 44.12 ? C8 LMT 405 B 1 
HETATM 32 C C9 LMT . . . Q 4 -16.312 89.122 -76.906 1 38.39 ? C9 LMT 405 B 1 
HETATM 33 C C10 LMT . . . Q 4 -17.414 88.365 -77.61 1 38.95 ? C10 LMT 405 B 1 
HETATM 34 C C11 LMT . . . Q 4 -18.744 88.495 -76.901 1 44.42 ? C11 LMT 405 B 1 
HETATM 35 C C12 LMT . . . Q 4 -19.2 87.249 -76.172 1 37 ? C12 LMT 405 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#