data_5NUR # _model_server_result.job_id Cjxj3aSMlmh_dOxzwELmlw _model_server_result.datetime_utc '2024-11-25 04:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 5NUR # _exptl.entry_id 5NUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.55 _cell.angle_gamma 90 _cell.entry_id 5NUR _cell.length_a 190.55 _cell.length_b 179.66 _cell.length_c 133.39 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 O N N ? 8 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 Z9M GP1 C1 O1 . O6 HO6 . sing 2 ? 3 3 2 KDO Z9M C2 O2 . O6 HO6 . sing 3 ? 3 4 3 KDO KDO C2 O2 . O4 HO4 . sing 4 ? 4 2 1 Z9M GP1 C1 O1 . O6 HO6 . sing 5 ? 4 3 2 KDO Z9M C2 O2 . O6 HO6 . sing 6 ? 4 4 3 KDO KDO C3 H31 . O4 HO4 . sing 7 ? 5 2 1 Z9M GP1 C1 O1 . O6 HO6 . sing 8 ? 5 3 2 KDO Z9M C3 H31 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G GP1 1 G 1 GP1 H 5 L1L 3 n G Z9M 2 G 2 Z9M H 1 Z9M 3 n G KDO 3 G 3 KDO H 2 KDO 3 n G KDO 4 G 4 KDO H 3 KDO 4 n H GP1 1 H 1 GP1 G 5 L1L 4 n H Z9M 2 H 2 Z9M G 1 Z9M 4 n H KDO 3 H 3 KDO G 2 KDO 4 n H KDO 4 H 4 KDO G 3 KDO 5 n I GP1 1 I 1 GP1 L 5 L1L 5 n I Z9M 2 I 2 Z9M L 1 Z9M 5 n I KDO 3 I 3 KDO L 2 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G O6 GP1 . G GP1 1 1_555 G C1 Z9M . G Z9M 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 sing covale ? covale2 G O6 Z9M . G Z9M 2 1_555 G C2 KDO . G KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 sing covale ? covale3 G O4 KDO . G KDO 3 1_555 G C2 KDO . G KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 sing covale ? covale4 H O6 GP1 . H GP1 1 1_555 H C1 Z9M . H Z9M 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 sing covale ? covale5 H O6 Z9M . H Z9M 2 1_555 H C2 KDO . H KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 sing covale ? covale6 H O4 KDO . H KDO 3 1_555 H C3 KDO . H KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 sing covale ? covale7 I O6 GP1 . I GP1 1 1_555 I C1 Z9M . I Z9M 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 sing covale ? covale8 I O6 Z9M . I Z9M 2 1_555 I C3 KDO . I KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 sing metalc ? metalc1 A O ASN 207 C ASN 207 1_555 J CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc2 A OD1 ASN 252 C ASN 252 1_555 J CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc3 J CA CA . C CA 401 1_555 G O5 KDO . G KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc4 J CA CA . C CA 401 1_555 G O4 KDO . G KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc5 C O ASN 207 A ASN 207 1_555 P CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc6 C OD1 ASN 236 A ASN 236 1_555 P CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc7 C OD1 ASN 252 A ASN 252 1_555 P CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc8 P CA CA . A CA 403 1_555 H O1A KDO . H KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc9 P CA CA . A CA 403 1_555 H O1B KDO . H KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 P CA CA . A CA 403 1_555 H O6 KDO . H KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc11 E O ASN 207 E ASN 207 1_555 T CA CA . E CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc12 E OD1 ASN 252 E ASN 252 1_555 T CA CA . E CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc13 T CA CA . E CA 405 1_555 I O4 KDO . I KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 5NUR _atom_sites.fract_transf_matrix[1][1] 0.005248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002622 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 6 CA C 1 401 2 CA CA . K 7 SO4 C 1 406 4 SO4 SO4 . L 7 SO4 C 1 407 5 SO4 SO4 . M 7 SO4 C 1 408 6 SO4 SO4 . N 8 C8E A 1 401 2 C8E C8E . O 8 C8E A 1 402 3 C8E C8E . P 6 CA A 1 403 1 CA CA . Q 7 SO4 A 1 408 1 SO4 SO4 . R 7 SO4 A 1 409 7 SO4 SO4 . S 8 C8E E 1 401 1 C8E C8E . T 6 CA E 1 405 3 CA CA . U 7 SO4 E 1 406 2 SO4 SO4 . V 7 SO4 E 1 407 3 SO4 SO4 . W 7 SO4 E 1 408 8 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . O 8 37.688 -44.673 11.209 1 123.48 ? C1 C8E 402 A 1 HETATM 2 C C2 C8E . . . O 8 36.535 -45.075 12.124 1 123.91 ? C2 C8E 402 A 1 HETATM 3 C C3 C8E . . . O 8 37 -45.419 13.54 1 123.41 ? C3 C8E 402 A 1 HETATM 4 C C4 C8E . . . O 8 37.993 -44.398 14.084 1 121.59 ? C4 C8E 402 A 1 HETATM 5 C C5 C8E . . . O 8 39.337 -45.021 14.449 1 119.61 ? C5 C8E 402 A 1 HETATM 6 C C6 C8E . . . O 8 39.562 -45.027 15.958 1 118.74 ? C6 C8E 402 A 1 HETATM 7 C C7 C8E . . . O 8 40.892 -45.708 16.241 1 119.24 ? C7 C8E 402 A 1 HETATM 8 C C8 C8E . . . O 8 41.085 -46.019 17.715 1 119.18 ? C8 C8E 402 A 1 HETATM 9 O O9 C8E . . . O 8 41.775 -47.248 17.823 1 119.67 ? O9 C8E 402 A 1 HETATM 10 C C10 C8E . . . O 8 43.089 -47.231 17.298 1 118.29 ? C10 C8E 402 A 1 HETATM 11 C C11 C8E . . . O 8 44.034 -47.65 18.424 1 116.7 ? C11 C8E 402 A 1 HETATM 12 O O12 C8E . . . O 8 45.22 -48.244 17.937 1 115.28 ? O12 C8E 402 A 1 HETATM 13 C C13 C8E . . . O 8 46.396 -47.521 18.255 1 113.82 ? C13 C8E 402 A 1 HETATM 14 C C14 C8E . . . O 8 47.625 -48.439 18.323 1 113 ? C14 C8E 402 A 1 HETATM 15 O O15 C8E . . . O 8 48.702 -47.77 18.961 1 113.2 ? O15 C8E 402 A 1 HETATM 16 C C16 C8E . . . O 8 49.778 -48.601 19.383 1 114.51 ? C16 C8E 402 A 1 HETATM 17 C C17 C8E . . . O 8 49.592 -49.27 20.771 1 114.25 ? C17 C8E 402 A 1 HETATM 18 O O18 C8E . . . O 8 50.612 -50.224 21.134 1 110.47 ? O18 C8E 402 A 1 HETATM 19 C C19 C8E . . . O 8 51.919 -49.7 21.344 1 105.94 ? C19 C8E 402 A 1 HETATM 20 C C20 C8E . . . O 8 52.822 -50.647 22.124 1 103.78 ? C20 C8E 402 A 1 HETATM 21 O O21 C8E . . . O 8 53.228 -50.065 23.349 1 103.25 ? O21 C8E 402 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #