data_5NV2 # _model_server_result.job_id qCTvCFqa_St-0qB3FDoJhQ _model_server_result.datetime_utc '2025-06-16 10:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 5NV2 # _exptl.entry_id 5NV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-6-methyl-~{N}-propan-2-yl-heptan-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NV2 _cell.length_a 74.63 _cell.length_b 74.63 _cell.length_c 156.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C11 H25 N' _chem_comp.formula_weight 171.323 _chem_comp.id 9AE _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-6-methyl-~{N}-propan-2-yl-heptan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C2 9AE sing 1 n n C2 N1 9AE sing 2 n n C2 C3 9AE sing 3 n n C11 C10 9AE sing 4 n n C7 C6 9AE sing 5 n n N1 C10 9AE sing 6 n n C3 C4 9AE sing 7 n n C4 C5 9AE sing 8 n n C6 C5 9AE sing 9 n n C6 C8 9AE sing 10 n n C10 C12 9AE sing 11 n n N1 H1 9AE sing 12 n n C2 H3 9AE sing 13 n n C3 H4 9AE sing 14 n n C3 H5 9AE sing 15 n n C4 H6 9AE sing 16 n n C4 H7 9AE sing 17 n n C6 H8 9AE sing 18 n n C7 H9 9AE sing 19 n n C7 H10 9AE sing 20 n n C7 H11 9AE sing 21 n n C8 H12 9AE sing 22 n n C8 H13 9AE sing 23 n n C8 H14 9AE sing 24 n n C9 H15 9AE sing 25 n n C9 H16 9AE sing 26 n n C9 H17 9AE sing 27 n n C10 H18 9AE sing 28 n n C12 H19 9AE sing 29 n n C12 H20 9AE sing 30 n n C12 H21 9AE sing 31 n n C11 H22 9AE sing 32 n n C11 H23 9AE sing 33 n n C11 H24 9AE sing 34 n n C5 H25 9AE sing 35 n n C5 H26 9AE sing 36 n n # _atom_sites.entry_id 5NV2 _atom_sites.fract_transf_matrix[1][1] 0.013399 _atom_sites.fract_transf_matrix[1][2] 0.007736 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9AE A 1 401 2 9AE 10N . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 2 SO4 SO4 . F 3 SO4 A 1 404 4 SO4 SO4 . G 3 SO4 A 1 405 6 SO4 SO4 . H 3 SO4 A 1 406 8 SO4 SO4 . I 2 9AE B 1 401 1 9AE 10N . J 3 SO4 B 1 402 3 SO4 SO4 . K 3 SO4 B 1 403 5 SO4 SO4 . L 3 SO4 B 1 404 7 SO4 SO4 . M 4 HOH A 1 501 11 HOH HOH . M 4 HOH A 2 502 92 HOH HOH . M 4 HOH A 3 503 25 HOH HOH . M 4 HOH A 4 504 80 HOH HOH . M 4 HOH A 5 505 85 HOH HOH . M 4 HOH A 6 506 43 HOH HOH . M 4 HOH A 7 507 7 HOH HOH . M 4 HOH A 8 508 3 HOH HOH . M 4 HOH A 9 509 64 HOH HOH . M 4 HOH A 10 510 102 HOH HOH . M 4 HOH A 11 511 12 HOH HOH . M 4 HOH A 12 512 14 HOH HOH . M 4 HOH A 13 513 53 HOH HOH . M 4 HOH A 14 514 26 HOH HOH . M 4 HOH A 15 515 35 HOH HOH . M 4 HOH A 16 516 59 HOH HOH . M 4 HOH A 17 517 50 HOH HOH . M 4 HOH A 18 518 2 HOH HOH . M 4 HOH A 19 519 21 HOH HOH . M 4 HOH A 20 520 24 HOH HOH . M 4 HOH A 21 521 17 HOH HOH . M 4 HOH A 22 522 33 HOH HOH . M 4 HOH A 23 523 45 HOH HOH . M 4 HOH A 24 524 30 HOH HOH . M 4 HOH A 25 525 70 HOH HOH . M 4 HOH A 26 526 9 HOH HOH . M 4 HOH A 27 527 4 HOH HOH . M 4 HOH A 28 528 76 HOH HOH . M 4 HOH A 29 529 81 HOH HOH . M 4 HOH A 30 530 39 HOH HOH . M 4 HOH A 31 531 46 HOH HOH . M 4 HOH A 32 532 15 HOH HOH . M 4 HOH A 33 533 78 HOH HOH . M 4 HOH A 34 534 36 HOH HOH . M 4 HOH A 35 535 16 HOH HOH . M 4 HOH A 36 536 5 HOH HOH . M 4 HOH A 37 537 95 HOH HOH . M 4 HOH A 38 538 69 HOH HOH . M 4 HOH A 39 539 63 HOH HOH . M 4 HOH A 40 540 57 HOH HOH . M 4 HOH A 41 541 44 HOH HOH . M 4 HOH A 42 542 23 HOH HOH . M 4 HOH A 43 543 84 HOH HOH . M 4 HOH A 44 544 8 HOH HOH . M 4 HOH A 45 545 71 HOH HOH . M 4 HOH A 46 546 74 HOH HOH . M 4 HOH A 47 547 37 HOH HOH . M 4 HOH A 48 548 10 HOH HOH . M 4 HOH A 49 549 97 HOH HOH . M 4 HOH A 50 550 93 HOH HOH . M 4 HOH A 51 551 104 HOH HOH . M 4 HOH A 52 552 22 HOH HOH . M 4 HOH A 53 553 55 HOH HOH . M 4 HOH A 54 554 72 HOH HOH . M 4 HOH A 55 555 101 HOH HOH . M 4 HOH A 56 556 90 HOH HOH . M 4 HOH A 57 557 73 HOH HOH . M 4 HOH A 58 558 13 HOH HOH . M 4 HOH A 59 559 94 HOH HOH . M 4 HOH A 60 560 62 HOH HOH . M 4 HOH A 61 561 54 HOH HOH . M 4 HOH A 62 562 75 HOH HOH . M 4 HOH A 63 563 77 HOH HOH . M 4 HOH A 64 564 100 HOH HOH . M 4 HOH A 65 565 41 HOH HOH . M 4 HOH A 66 566 83 HOH HOH . M 4 HOH A 67 567 103 HOH HOH . M 4 HOH A 68 568 49 HOH HOH . M 4 HOH A 69 569 105 HOH HOH . N 4 HOH B 1 501 31 HOH HOH . N 4 HOH B 2 502 28 HOH HOH . N 4 HOH B 3 503 87 HOH HOH . N 4 HOH B 4 504 61 HOH HOH . N 4 HOH B 5 505 42 HOH HOH . N 4 HOH B 6 506 98 HOH HOH . N 4 HOH B 7 507 82 HOH HOH . N 4 HOH B 8 508 20 HOH HOH . N 4 HOH B 9 509 47 HOH HOH . N 4 HOH B 10 510 91 HOH HOH . N 4 HOH B 11 511 99 HOH HOH . N 4 HOH B 12 512 48 HOH HOH . N 4 HOH B 13 513 51 HOH HOH . N 4 HOH B 14 514 58 HOH HOH . N 4 HOH B 15 515 86 HOH HOH . N 4 HOH B 16 516 79 HOH HOH . N 4 HOH B 17 517 60 HOH HOH . N 4 HOH B 18 518 34 HOH HOH . N 4 HOH B 19 519 66 HOH HOH . N 4 HOH B 20 520 32 HOH HOH . N 4 HOH B 21 521 27 HOH HOH . N 4 HOH B 22 522 67 HOH HOH . N 4 HOH B 23 523 88 HOH HOH . N 4 HOH B 24 524 18 HOH HOH . N 4 HOH B 25 525 38 HOH HOH . N 4 HOH B 26 526 68 HOH HOH . N 4 HOH B 27 527 106 HOH HOH . N 4 HOH B 28 528 56 HOH HOH . N 4 HOH B 29 529 19 HOH HOH . N 4 HOH B 30 530 40 HOH HOH . N 4 HOH B 31 531 96 HOH HOH . N 4 HOH B 32 532 29 HOH HOH . N 4 HOH B 33 533 52 HOH HOH . N 4 HOH B 34 534 89 HOH HOH . N 4 HOH B 35 535 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 9AE . . . I 2 21.78 -6.406 13.824 0.93 70.04 ? N1 9AE 401 B 1 HETATM 2 C C2 9AE . . . I 2 22.058 -7.597 12.982 0.93 69.13 ? C2 9AE 401 B 1 HETATM 3 C C3 9AE . . . I 2 22.767 -8.636 13.849 0.93 61.4 ? C3 9AE 401 B 1 HETATM 4 C C4 9AE . . . I 2 21.952 -9.922 13.855 0.93 64.45 ? C4 9AE 401 B 1 HETATM 5 C C6 9AE . . . I 2 19.569 -10.792 13.974 0.93 64.19 ? C6 9AE 401 B 1 HETATM 6 C C7 9AE . . . I 2 20.285 -12.014 13.389 0.93 58.18 ? C7 9AE 401 B 1 HETATM 7 C C8 9AE . . . I 2 18.735 -11.152 15.202 0.93 60.26 ? C8 9AE 401 B 1 HETATM 8 C C9 9AE . . . I 2 22.826 -7.304 11.682 0.93 59.38 ? C9 9AE 401 B 1 HETATM 9 C C10 9AE . . . I 2 22.997 -5.626 14.142 0.93 60.47 ? C10 9AE 401 B 1 HETATM 10 C C12 9AE . . . I 2 22.995 -5.268 15.618 0.93 58.2 ? C12 9AE 401 B 1 HETATM 11 C C11 9AE . . . I 2 23.013 -4.338 13.326 0.93 68.52 ? C11 9AE 401 B 1 HETATM 12 C C5 9AE . . . I 2 20.524 -9.647 14.322 0.93 63.34 ? C5 9AE 401 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #