data_5NV2 # _model_server_result.job_id '_LA3qPoWQnyOWCgcUpoEng' _model_server_result.datetime_utc '2025-06-12 19:45:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5NV2 # _exptl.entry_id 5NV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NV2 _cell.length_a 74.63 _cell.length_b 74.63 _cell.length_c 156.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 313 n n S O2 SO4 doub 314 n n S O3 SO4 sing 315 n n S O4 SO4 sing 316 n n # _atom_sites.entry_id 5NV2 _atom_sites.fract_transf_matrix[1][1] 0.013399 _atom_sites.fract_transf_matrix[1][2] 0.007736 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9AE A 1 401 2 9AE 10N . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 2 SO4 SO4 . F 3 SO4 A 1 404 4 SO4 SO4 . G 3 SO4 A 1 405 6 SO4 SO4 . H 3 SO4 A 1 406 8 SO4 SO4 . I 2 9AE B 1 401 1 9AE 10N . J 3 SO4 B 1 402 3 SO4 SO4 . K 3 SO4 B 1 403 5 SO4 SO4 . L 3 SO4 B 1 404 7 SO4 SO4 . M 4 HOH A 1 501 11 HOH HOH . M 4 HOH A 2 502 92 HOH HOH . M 4 HOH A 3 503 25 HOH HOH . M 4 HOH A 4 504 80 HOH HOH . M 4 HOH A 5 505 85 HOH HOH . M 4 HOH A 6 506 43 HOH HOH . M 4 HOH A 7 507 7 HOH HOH . M 4 HOH A 8 508 3 HOH HOH . M 4 HOH A 9 509 64 HOH HOH . M 4 HOH A 10 510 102 HOH HOH . M 4 HOH A 11 511 12 HOH HOH . M 4 HOH A 12 512 14 HOH HOH . M 4 HOH A 13 513 53 HOH HOH . M 4 HOH A 14 514 26 HOH HOH . M 4 HOH A 15 515 35 HOH HOH . M 4 HOH A 16 516 59 HOH HOH . M 4 HOH A 17 517 50 HOH HOH . M 4 HOH A 18 518 2 HOH HOH . M 4 HOH A 19 519 21 HOH HOH . M 4 HOH A 20 520 24 HOH HOH . M 4 HOH A 21 521 17 HOH HOH . M 4 HOH A 22 522 33 HOH HOH . M 4 HOH A 23 523 45 HOH HOH . M 4 HOH A 24 524 30 HOH HOH . M 4 HOH A 25 525 70 HOH HOH . M 4 HOH A 26 526 9 HOH HOH . M 4 HOH A 27 527 4 HOH HOH . M 4 HOH A 28 528 76 HOH HOH . M 4 HOH A 29 529 81 HOH HOH . M 4 HOH A 30 530 39 HOH HOH . M 4 HOH A 31 531 46 HOH HOH . M 4 HOH A 32 532 15 HOH HOH . M 4 HOH A 33 533 78 HOH HOH . M 4 HOH A 34 534 36 HOH HOH . M 4 HOH A 35 535 16 HOH HOH . M 4 HOH A 36 536 5 HOH HOH . M 4 HOH A 37 537 95 HOH HOH . M 4 HOH A 38 538 69 HOH HOH . M 4 HOH A 39 539 63 HOH HOH . M 4 HOH A 40 540 57 HOH HOH . M 4 HOH A 41 541 44 HOH HOH . M 4 HOH A 42 542 23 HOH HOH . M 4 HOH A 43 543 84 HOH HOH . M 4 HOH A 44 544 8 HOH HOH . M 4 HOH A 45 545 71 HOH HOH . M 4 HOH A 46 546 74 HOH HOH . M 4 HOH A 47 547 37 HOH HOH . M 4 HOH A 48 548 10 HOH HOH . M 4 HOH A 49 549 97 HOH HOH . M 4 HOH A 50 550 93 HOH HOH . M 4 HOH A 51 551 104 HOH HOH . M 4 HOH A 52 552 22 HOH HOH . M 4 HOH A 53 553 55 HOH HOH . M 4 HOH A 54 554 72 HOH HOH . M 4 HOH A 55 555 101 HOH HOH . M 4 HOH A 56 556 90 HOH HOH . M 4 HOH A 57 557 73 HOH HOH . M 4 HOH A 58 558 13 HOH HOH . M 4 HOH A 59 559 94 HOH HOH . M 4 HOH A 60 560 62 HOH HOH . M 4 HOH A 61 561 54 HOH HOH . M 4 HOH A 62 562 75 HOH HOH . M 4 HOH A 63 563 77 HOH HOH . M 4 HOH A 64 564 100 HOH HOH . M 4 HOH A 65 565 41 HOH HOH . M 4 HOH A 66 566 83 HOH HOH . M 4 HOH A 67 567 103 HOH HOH . M 4 HOH A 68 568 49 HOH HOH . M 4 HOH A 69 569 105 HOH HOH . N 4 HOH B 1 501 31 HOH HOH . N 4 HOH B 2 502 28 HOH HOH . N 4 HOH B 3 503 87 HOH HOH . N 4 HOH B 4 504 61 HOH HOH . N 4 HOH B 5 505 42 HOH HOH . N 4 HOH B 6 506 98 HOH HOH . N 4 HOH B 7 507 82 HOH HOH . N 4 HOH B 8 508 20 HOH HOH . N 4 HOH B 9 509 47 HOH HOH . N 4 HOH B 10 510 91 HOH HOH . N 4 HOH B 11 511 99 HOH HOH . N 4 HOH B 12 512 48 HOH HOH . N 4 HOH B 13 513 51 HOH HOH . N 4 HOH B 14 514 58 HOH HOH . N 4 HOH B 15 515 86 HOH HOH . N 4 HOH B 16 516 79 HOH HOH . N 4 HOH B 17 517 60 HOH HOH . N 4 HOH B 18 518 34 HOH HOH . N 4 HOH B 19 519 66 HOH HOH . N 4 HOH B 20 520 32 HOH HOH . N 4 HOH B 21 521 27 HOH HOH . N 4 HOH B 22 522 67 HOH HOH . N 4 HOH B 23 523 88 HOH HOH . N 4 HOH B 24 524 18 HOH HOH . N 4 HOH B 25 525 38 HOH HOH . N 4 HOH B 26 526 68 HOH HOH . N 4 HOH B 27 527 106 HOH HOH . N 4 HOH B 28 528 56 HOH HOH . N 4 HOH B 29 529 19 HOH HOH . N 4 HOH B 30 530 40 HOH HOH . N 4 HOH B 31 531 96 HOH HOH . N 4 HOH B 32 532 29 HOH HOH . N 4 HOH B 33 533 52 HOH HOH . N 4 HOH B 34 534 89 HOH HOH . N 4 HOH B 35 535 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 32.909 -40.934 -18.763 0.88 81.06 ? S SO4 403 A 1 HETATM 2 O O1 SO4 . . . E 3 34.215 -41.597 -18.756 0.88 67.53 ? O1 SO4 403 A 1 HETATM 3 O O2 SO4 . . . E 3 32.453 -40.775 -20.147 0.88 77.69 ? O2 SO4 403 A 1 HETATM 4 O O3 SO4 . . . E 3 31.957 -41.755 -18.016 0.88 76.26 ? O3 SO4 403 A 1 HETATM 5 O O4 SO4 . . . E 3 33.005 -39.609 -18.142 0.88 60.65 ? O4 SO4 403 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #