data_5NVA # _model_server_result.job_id pMY6PPsvCW70RzVLCauRrg _model_server_result.datetime_utc '2024-11-04 22:33:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5NVA # _exptl.entry_id 5NVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NVA _cell.length_a 48.788 _cell.length_b 97.764 _cell.length_c 151.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 56 A ALA 56 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 A O LEU 59 A LEU 59 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A OD1 ASP 182 A ASP 182 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 A OD2 ASP 182 A ASP 182 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A O ALA 339 A ALA 339 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 A OG SER 342 A SER 342 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc7 A O SER 342 A SER 342 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 A OG SER 343 A SER 343 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc9 A OG SER 345 A SER 345 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc10 A OG SER 346 A SER 346 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NVA _atom_sites.fract_transf_matrix[1][1] 0.020497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 2 NA A 1 502 2 NA NA . D 3 SLB A 1 503 1 SLB SLB . E 4 HOH A 1 601 232 HOH HOH . E 4 HOH A 2 602 161 HOH HOH . E 4 HOH A 3 603 144 HOH HOH . E 4 HOH A 4 604 114 HOH HOH . E 4 HOH A 5 605 83 HOH HOH . E 4 HOH A 6 606 57 HOH HOH . E 4 HOH A 7 607 136 HOH HOH . E 4 HOH A 8 608 40 HOH HOH . E 4 HOH A 9 609 116 HOH HOH . E 4 HOH A 10 610 69 HOH HOH . E 4 HOH A 11 611 52 HOH HOH . E 4 HOH A 12 612 5 HOH HOH . E 4 HOH A 13 613 187 HOH HOH . E 4 HOH A 14 614 74 HOH HOH . E 4 HOH A 15 615 42 HOH HOH . E 4 HOH A 16 616 99 HOH HOH . E 4 HOH A 17 617 104 HOH HOH . E 4 HOH A 18 618 156 HOH HOH . E 4 HOH A 19 619 8 HOH HOH . E 4 HOH A 20 620 2 HOH HOH . E 4 HOH A 21 621 141 HOH HOH . E 4 HOH A 22 622 97 HOH HOH . E 4 HOH A 23 623 16 HOH HOH . E 4 HOH A 24 624 182 HOH HOH . E 4 HOH A 25 625 39 HOH HOH . E 4 HOH A 26 626 26 HOH HOH . E 4 HOH A 27 627 12 HOH HOH . E 4 HOH A 28 628 106 HOH HOH . E 4 HOH A 29 629 226 HOH HOH . E 4 HOH A 30 630 11 HOH HOH . E 4 HOH A 31 631 3 HOH HOH . E 4 HOH A 32 632 173 HOH HOH . E 4 HOH A 33 633 14 HOH HOH . E 4 HOH A 34 634 86 HOH HOH . E 4 HOH A 35 635 21 HOH HOH . E 4 HOH A 36 636 25 HOH HOH . E 4 HOH A 37 637 7 HOH HOH . E 4 HOH A 38 638 72 HOH HOH . E 4 HOH A 39 639 233 HOH HOH . E 4 HOH A 40 640 67 HOH HOH . E 4 HOH A 41 641 76 HOH HOH . E 4 HOH A 42 642 224 HOH HOH . E 4 HOH A 43 643 24 HOH HOH . E 4 HOH A 44 644 27 HOH HOH . E 4 HOH A 45 645 229 HOH HOH . E 4 HOH A 46 646 22 HOH HOH . E 4 HOH A 47 647 191 HOH HOH . E 4 HOH A 48 648 1 HOH HOH . E 4 HOH A 49 649 18 HOH HOH . E 4 HOH A 50 650 32 HOH HOH . E 4 HOH A 51 651 35 HOH HOH . E 4 HOH A 52 652 23 HOH HOH . E 4 HOH A 53 653 15 HOH HOH . E 4 HOH A 54 654 94 HOH HOH . E 4 HOH A 55 655 4 HOH HOH . E 4 HOH A 56 656 105 HOH HOH . E 4 HOH A 57 657 98 HOH HOH . E 4 HOH A 58 658 44 HOH HOH . E 4 HOH A 59 659 164 HOH HOH . E 4 HOH A 60 660 73 HOH HOH . E 4 HOH A 61 661 119 HOH HOH . E 4 HOH A 62 662 112 HOH HOH . E 4 HOH A 63 663 6 HOH HOH . E 4 HOH A 64 664 62 HOH HOH . E 4 HOH A 65 665 96 HOH HOH . E 4 HOH A 66 666 54 HOH HOH . E 4 HOH A 67 667 9 HOH HOH . E 4 HOH A 68 668 64 HOH HOH . E 4 HOH A 69 669 221 HOH HOH . E 4 HOH A 70 670 122 HOH HOH . E 4 HOH A 71 671 37 HOH HOH . E 4 HOH A 72 672 202 HOH HOH . E 4 HOH A 73 673 28 HOH HOH . E 4 HOH A 74 674 201 HOH HOH . E 4 HOH A 75 675 180 HOH HOH . E 4 HOH A 76 676 127 HOH HOH . E 4 HOH A 77 677 45 HOH HOH . E 4 HOH A 78 678 79 HOH HOH . E 4 HOH A 79 679 30 HOH HOH . E 4 HOH A 80 680 101 HOH HOH . E 4 HOH A 81 681 56 HOH HOH . E 4 HOH A 82 682 78 HOH HOH . E 4 HOH A 83 683 46 HOH HOH . E 4 HOH A 84 684 38 HOH HOH . E 4 HOH A 85 685 185 HOH HOH . E 4 HOH A 86 686 10 HOH HOH . E 4 HOH A 87 687 13 HOH HOH . E 4 HOH A 88 688 150 HOH HOH . E 4 HOH A 89 689 203 HOH HOH . E 4 HOH A 90 690 87 HOH HOH . E 4 HOH A 91 691 55 HOH HOH . E 4 HOH A 92 692 36 HOH HOH . E 4 HOH A 93 693 200 HOH HOH . E 4 HOH A 94 694 186 HOH HOH . E 4 HOH A 95 695 71 HOH HOH . E 4 HOH A 96 696 113 HOH HOH . E 4 HOH A 97 697 147 HOH HOH . E 4 HOH A 98 698 77 HOH HOH . E 4 HOH A 99 699 149 HOH HOH . E 4 HOH A 100 700 168 HOH HOH . E 4 HOH A 101 701 155 HOH HOH . E 4 HOH A 102 702 115 HOH HOH . E 4 HOH A 103 703 66 HOH HOH . E 4 HOH A 104 704 68 HOH HOH . E 4 HOH A 105 705 58 HOH HOH . E 4 HOH A 106 706 82 HOH HOH . E 4 HOH A 107 707 171 HOH HOH . E 4 HOH A 108 708 181 HOH HOH . E 4 HOH A 109 709 121 HOH HOH . E 4 HOH A 110 710 216 HOH HOH . E 4 HOH A 111 711 174 HOH HOH . E 4 HOH A 112 712 43 HOH HOH . E 4 HOH A 113 713 70 HOH HOH . E 4 HOH A 114 714 212 HOH HOH . E 4 HOH A 115 715 130 HOH HOH . E 4 HOH A 116 716 80 HOH HOH . E 4 HOH A 117 717 143 HOH HOH . E 4 HOH A 118 718 95 HOH HOH . E 4 HOH A 119 719 163 HOH HOH . E 4 HOH A 120 720 222 HOH HOH . E 4 HOH A 121 721 100 HOH HOH . E 4 HOH A 122 722 90 HOH HOH . E 4 HOH A 123 723 48 HOH HOH . E 4 HOH A 124 724 167 HOH HOH . E 4 HOH A 125 725 211 HOH HOH . E 4 HOH A 126 726 20 HOH HOH . E 4 HOH A 127 727 85 HOH HOH . E 4 HOH A 128 728 228 HOH HOH . E 4 HOH A 129 729 53 HOH HOH . E 4 HOH A 130 730 184 HOH HOH . E 4 HOH A 131 731 17 HOH HOH . E 4 HOH A 132 732 166 HOH HOH . E 4 HOH A 133 733 194 HOH HOH . E 4 HOH A 134 734 236 HOH HOH . E 4 HOH A 135 735 178 HOH HOH . E 4 HOH A 136 736 153 HOH HOH . E 4 HOH A 137 737 61 HOH HOH . E 4 HOH A 138 738 49 HOH HOH . E 4 HOH A 139 739 208 HOH HOH . E 4 HOH A 140 740 110 HOH HOH . E 4 HOH A 141 741 162 HOH HOH . E 4 HOH A 142 742 135 HOH HOH . E 4 HOH A 143 743 231 HOH HOH . E 4 HOH A 144 744 175 HOH HOH . E 4 HOH A 145 745 133 HOH HOH . E 4 HOH A 146 746 131 HOH HOH . E 4 HOH A 147 747 50 HOH HOH . E 4 HOH A 148 748 235 HOH HOH . E 4 HOH A 149 749 195 HOH HOH . E 4 HOH A 150 750 199 HOH HOH . E 4 HOH A 151 751 88 HOH HOH . E 4 HOH A 152 752 214 HOH HOH . E 4 HOH A 153 753 19 HOH HOH . E 4 HOH A 154 754 206 HOH HOH . E 4 HOH A 155 755 33 HOH HOH . E 4 HOH A 156 756 230 HOH HOH . E 4 HOH A 157 757 128 HOH HOH . E 4 HOH A 158 758 91 HOH HOH . E 4 HOH A 159 759 29 HOH HOH . E 4 HOH A 160 760 165 HOH HOH . E 4 HOH A 161 761 123 HOH HOH . E 4 HOH A 162 762 93 HOH HOH . E 4 HOH A 163 763 134 HOH HOH . E 4 HOH A 164 764 120 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.115 _atom_site.Cartn_y 101.611 _atom_site.Cartn_z 18.48 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #