data_5NVM # _model_server_result.job_id VRrDRZ1SOCF71qywnBEQOg _model_server_result.datetime_utc '2024-11-16 13:48:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 5NVM # _exptl.entry_id 5NVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.59 _cell.angle_gamma 90 _cell.entry_id 5NVM _cell.length_a 152.21 _cell.length_b 98.59 _cell.length_c 39.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5NVM _atom_sites.fract_transf_matrix[1][1] 0.00657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 301 2 PO4 PO4 . F 3 PO4 B 1 101 1 PO4 PO4 . G 3 PO4 C 1 301 3 PO4 PO4 . H 3 PO4 D 1 101 4 PO4 PO4 . I 4 HOH A 1 401 126 HOH HOH . I 4 HOH A 2 402 2 HOH HOH . I 4 HOH A 3 403 98 HOH HOH . I 4 HOH A 4 404 26 HOH HOH . I 4 HOH A 5 405 68 HOH HOH . I 4 HOH A 6 406 28 HOH HOH . I 4 HOH A 7 407 48 HOH HOH . I 4 HOH A 8 408 46 HOH HOH . I 4 HOH A 9 409 40 HOH HOH . I 4 HOH A 10 410 57 HOH HOH . I 4 HOH A 11 411 3 HOH HOH . I 4 HOH A 12 412 22 HOH HOH . I 4 HOH A 13 413 85 HOH HOH . I 4 HOH A 14 414 114 HOH HOH . I 4 HOH A 15 415 69 HOH HOH . I 4 HOH A 16 416 110 HOH HOH . I 4 HOH A 17 417 53 HOH HOH . I 4 HOH A 18 418 34 HOH HOH . I 4 HOH A 19 419 58 HOH HOH . I 4 HOH A 20 420 20 HOH HOH . I 4 HOH A 21 421 4 HOH HOH . I 4 HOH A 22 422 21 HOH HOH . I 4 HOH A 23 423 1 HOH HOH . I 4 HOH A 24 424 39 HOH HOH . I 4 HOH A 25 425 6 HOH HOH . I 4 HOH A 26 426 49 HOH HOH . I 4 HOH A 27 427 8 HOH HOH . I 4 HOH A 28 428 122 HOH HOH . I 4 HOH A 29 429 99 HOH HOH . I 4 HOH A 30 430 7 HOH HOH . I 4 HOH A 31 431 89 HOH HOH . I 4 HOH A 32 432 17 HOH HOH . I 4 HOH A 33 433 105 HOH HOH . I 4 HOH A 34 434 62 HOH HOH . I 4 HOH A 35 435 11 HOH HOH . I 4 HOH A 36 436 102 HOH HOH . I 4 HOH A 37 437 73 HOH HOH . I 4 HOH A 38 438 72 HOH HOH . I 4 HOH A 39 439 32 HOH HOH . I 4 HOH A 40 440 14 HOH HOH . I 4 HOH A 41 441 86 HOH HOH . I 4 HOH A 42 442 125 HOH HOH . I 4 HOH A 43 443 111 HOH HOH . I 4 HOH A 44 444 19 HOH HOH . I 4 HOH A 45 445 10 HOH HOH . I 4 HOH A 46 446 9 HOH HOH . I 4 HOH A 47 447 59 HOH HOH . I 4 HOH A 48 448 81 HOH HOH . I 4 HOH A 49 449 15 HOH HOH . I 4 HOH A 50 450 51 HOH HOH . I 4 HOH A 51 451 12 HOH HOH . I 4 HOH A 52 452 112 HOH HOH . I 4 HOH A 53 453 16 HOH HOH . I 4 HOH A 54 454 88 HOH HOH . I 4 HOH A 55 455 101 HOH HOH . I 4 HOH A 56 456 106 HOH HOH . I 4 HOH A 57 457 79 HOH HOH . I 4 HOH A 58 458 67 HOH HOH . I 4 HOH A 59 459 95 HOH HOH . I 4 HOH A 60 460 27 HOH HOH . I 4 HOH A 61 461 103 HOH HOH . I 4 HOH A 62 462 123 HOH HOH . I 4 HOH A 63 463 107 HOH HOH . I 4 HOH A 64 464 87 HOH HOH . I 4 HOH A 65 465 104 HOH HOH . I 4 HOH A 66 466 90 HOH HOH . I 4 HOH A 67 467 42 HOH HOH . I 4 HOH A 68 468 78 HOH HOH . J 4 HOH B 1 201 31 HOH HOH . J 4 HOH B 2 202 127 HOH HOH . J 4 HOH B 3 203 108 HOH HOH . J 4 HOH B 4 204 80 HOH HOH . J 4 HOH B 5 205 35 HOH HOH . J 4 HOH B 6 206 52 HOH HOH . J 4 HOH B 7 207 29 HOH HOH . J 4 HOH B 8 208 116 HOH HOH . J 4 HOH B 9 209 115 HOH HOH . J 4 HOH B 10 210 82 HOH HOH . J 4 HOH B 11 211 124 HOH HOH . J 4 HOH B 12 212 77 HOH HOH . J 4 HOH B 13 213 109 HOH HOH . J 4 HOH B 14 214 38 HOH HOH . J 4 HOH B 15 215 96 HOH HOH . J 4 HOH B 16 216 5 HOH HOH . J 4 HOH B 17 217 92 HOH HOH . J 4 HOH B 18 218 44 HOH HOH . J 4 HOH B 19 219 100 HOH HOH . J 4 HOH B 20 220 71 HOH HOH . J 4 HOH B 21 221 64 HOH HOH . J 4 HOH B 22 222 128 HOH HOH . K 4 HOH C 1 401 56 HOH HOH . K 4 HOH C 2 402 93 HOH HOH . K 4 HOH C 3 403 117 HOH HOH . K 4 HOH C 4 404 70 HOH HOH . K 4 HOH C 5 405 74 HOH HOH . K 4 HOH C 6 406 36 HOH HOH . K 4 HOH C 7 407 120 HOH HOH . K 4 HOH C 8 408 37 HOH HOH . K 4 HOH C 9 409 55 HOH HOH . K 4 HOH C 10 410 94 HOH HOH . K 4 HOH C 11 411 97 HOH HOH . K 4 HOH C 12 412 18 HOH HOH . K 4 HOH C 13 413 25 HOH HOH . K 4 HOH C 14 414 30 HOH HOH . K 4 HOH C 15 415 23 HOH HOH . K 4 HOH C 16 416 76 HOH HOH . K 4 HOH C 17 417 60 HOH HOH . K 4 HOH C 18 418 45 HOH HOH . K 4 HOH C 19 419 65 HOH HOH . K 4 HOH C 20 420 91 HOH HOH . K 4 HOH C 21 421 75 HOH HOH . K 4 HOH C 22 422 83 HOH HOH . K 4 HOH C 23 423 66 HOH HOH . K 4 HOH C 24 424 121 HOH HOH . K 4 HOH C 25 425 43 HOH HOH . L 4 HOH D 1 201 130 HOH HOH . L 4 HOH D 2 202 13 HOH HOH . L 4 HOH D 3 203 41 HOH HOH . L 4 HOH D 4 204 63 HOH HOH . L 4 HOH D 5 205 61 HOH HOH . L 4 HOH D 6 206 54 HOH HOH . L 4 HOH D 7 207 129 HOH HOH . L 4 HOH D 8 208 118 HOH HOH . L 4 HOH D 9 209 24 HOH HOH . L 4 HOH D 10 210 47 HOH HOH . L 4 HOH D 11 211 119 HOH HOH . L 4 HOH D 12 212 50 HOH HOH . L 4 HOH D 13 213 33 HOH HOH . L 4 HOH D 14 214 84 HOH HOH . L 4 HOH D 15 215 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 3 49.131 -8.75 28.254 1 101.4 ? P PO4 101 D 1 HETATM 2 O O1 PO4 . . . H 3 49.986 -8.371 27.066 1 91.2 ? O1 PO4 101 D 1 HETATM 3 O O2 PO4 . . . H 3 47.987 -9.619 27.775 1 96.48 ? O2 PO4 101 D 1 HETATM 4 O O3 PO4 . . . H 3 48.605 -7.493 28.924 1 82.67 ? O3 PO4 101 D 1 HETATM 5 O O4 PO4 . . . H 3 49.949 -9.54 29.25 1 77.83 ? O4 PO4 101 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #