data_5NW8
#
_model_server_result.job_id            mtjdGpNzZamma1hhZXIwzw 
_model_server_result.datetime_utc      '2024-12-01 03:12:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nw8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":101}' 
#
_entry.id    5NW8 
#
_exptl.entry_id    5NW8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-ribopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NW8 
_cell.length_a            69.515 
_cell.length_b            73.112 
_cell.length_c            77.317 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NW8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 139 A PHE 138 1_555 A N SEP 140 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C SEP 140 A SEP 139 1_555 A N GLU 141 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C TRP 197 A TRP 196 1_555 A N TPO 198 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C TPO 198 A TPO 197 1_555 A N LEU 199 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 A C VAL 338 A VAL 337 1_555 A N SEP 339 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C SEP 339 A SEP 338 1_555 A N ILE 340 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 B OG SER 14 D SER 24 1_555 E C1 RIP . D RIP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RIP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-ribopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     'beta-D-ribose;D-ribose;ribose;RIBOSE(PYRANOSE FORM)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RIP sing 337 n n 
C1 O1 RIP sing 338 n n 
C1 O5 RIP sing 339 n n 
C1 H1 RIP sing 340 n n 
C2 C3 RIP sing 341 n n 
C2 O2 RIP sing 342 n n 
C2 H2 RIP sing 343 n n 
C3 C4 RIP sing 344 n n 
C3 O3 RIP sing 345 n n 
C3 H3 RIP sing 346 n n 
C4 C5 RIP sing 347 n n 
C4 O4 RIP sing 348 n n 
C4 H4 RIP sing 349 n n 
C5 O5 RIP sing 350 n n 
C5 H51 RIP sing 351 n n 
C5 H52 RIP sing 352 n n 
O1 HO1 RIP sing 353 n n 
O2 HO2 RIP sing 354 n n 
O3 HO3 RIP sing 355 n n 
O4 HO4 RIP sing 356 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RIP b-D-ribopyranose 'COMMON NAME' GMML 1 
RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5NW8 
_atom_sites.fract_transf_matrix[1][1]    0.014385 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013678 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MPD A 1 401 1 MPD MPD . 
D 4 M77 A 1 402 1 M77 FAS . 
E 5 RIP D 1 101 1 RIP RIB . 
F 6 HOH A 1 501 114 HOH HOH . 
F 6 HOH A 2 502 99 HOH HOH . 
F 6 HOH A 3 503 147 HOH HOH . 
F 6 HOH A 4 504 140 HOH HOH . 
F 6 HOH A 5 505 145 HOH HOH . 
F 6 HOH A 6 506 57 HOH HOH . 
F 6 HOH A 7 507 117 HOH HOH . 
F 6 HOH A 8 508 193 HOH HOH . 
F 6 HOH A 9 509 203 HOH HOH . 
F 6 HOH A 10 510 181 HOH HOH . 
F 6 HOH A 11 511 123 HOH HOH . 
F 6 HOH A 12 512 205 HOH HOH . 
F 6 HOH A 13 513 166 HOH HOH . 
F 6 HOH A 14 514 125 HOH HOH . 
F 6 HOH A 15 515 154 HOH HOH . 
F 6 HOH A 16 516 130 HOH HOH . 
F 6 HOH A 17 517 204 HOH HOH . 
F 6 HOH A 18 518 65 HOH HOH . 
F 6 HOH A 19 519 202 HOH HOH . 
F 6 HOH A 20 520 98 HOH HOH . 
F 6 HOH A 21 521 20 HOH HOH . 
F 6 HOH A 22 522 197 HOH HOH . 
F 6 HOH A 23 523 10 HOH HOH . 
F 6 HOH A 24 524 124 HOH HOH . 
F 6 HOH A 25 525 50 HOH HOH . 
F 6 HOH A 26 526 17 HOH HOH . 
F 6 HOH A 27 527 56 HOH HOH . 
F 6 HOH A 28 528 120 HOH HOH . 
F 6 HOH A 29 529 175 HOH HOH . 
F 6 HOH A 30 530 168 HOH HOH . 
F 6 HOH A 31 531 100 HOH HOH . 
F 6 HOH A 32 532 144 HOH HOH . 
F 6 HOH A 33 533 110 HOH HOH . 
F 6 HOH A 34 534 119 HOH HOH . 
F 6 HOH A 35 535 75 HOH HOH . 
F 6 HOH A 36 536 3 HOH HOH . 
F 6 HOH A 37 537 45 HOH HOH . 
F 6 HOH A 38 538 118 HOH HOH . 
F 6 HOH A 39 539 91 HOH HOH . 
F 6 HOH A 40 540 112 HOH HOH . 
F 6 HOH A 41 541 54 HOH HOH . 
F 6 HOH A 42 542 47 HOH HOH . 
F 6 HOH A 43 543 76 HOH HOH . 
F 6 HOH A 44 544 63 HOH HOH . 
F 6 HOH A 45 545 41 HOH HOH . 
F 6 HOH A 46 546 139 HOH HOH . 
F 6 HOH A 47 547 69 HOH HOH . 
F 6 HOH A 48 548 104 HOH HOH . 
F 6 HOH A 49 549 37 HOH HOH . 
F 6 HOH A 50 550 172 HOH HOH . 
F 6 HOH A 51 551 201 HOH HOH . 
F 6 HOH A 52 552 142 HOH HOH . 
F 6 HOH A 53 553 66 HOH HOH . 
F 6 HOH A 54 554 2 HOH HOH . 
F 6 HOH A 55 555 196 HOH HOH . 
F 6 HOH A 56 556 111 HOH HOH . 
F 6 HOH A 57 557 84 HOH HOH . 
F 6 HOH A 58 558 73 HOH HOH . 
F 6 HOH A 59 559 103 HOH HOH . 
F 6 HOH A 60 560 101 HOH HOH . 
F 6 HOH A 61 561 46 HOH HOH . 
F 6 HOH A 62 562 176 HOH HOH . 
F 6 HOH A 63 563 38 HOH HOH . 
F 6 HOH A 64 564 42 HOH HOH . 
F 6 HOH A 65 565 5 HOH HOH . 
F 6 HOH A 66 566 92 HOH HOH . 
F 6 HOH A 67 567 28 HOH HOH . 
F 6 HOH A 68 568 195 HOH HOH . 
F 6 HOH A 69 569 52 HOH HOH . 
F 6 HOH A 70 570 200 HOH HOH . 
F 6 HOH A 71 571 39 HOH HOH . 
F 6 HOH A 72 572 27 HOH HOH . 
F 6 HOH A 73 573 36 HOH HOH . 
F 6 HOH A 74 574 4 HOH HOH . 
F 6 HOH A 75 575 126 HOH HOH . 
F 6 HOH A 76 576 22 HOH HOH . 
F 6 HOH A 77 577 158 HOH HOH . 
F 6 HOH A 78 578 132 HOH HOH . 
F 6 HOH A 79 579 43 HOH HOH . 
F 6 HOH A 80 580 8 HOH HOH . 
F 6 HOH A 81 581 26 HOH HOH . 
F 6 HOH A 82 582 15 HOH HOH . 
F 6 HOH A 83 583 97 HOH HOH . 
F 6 HOH A 84 584 143 HOH HOH . 
F 6 HOH A 85 585 71 HOH HOH . 
F 6 HOH A 86 586 85 HOH HOH . 
F 6 HOH A 87 587 94 HOH HOH . 
F 6 HOH A 88 588 9 HOH HOH . 
F 6 HOH A 89 589 93 HOH HOH . 
F 6 HOH A 90 590 180 HOH HOH . 
F 6 HOH A 91 591 80 HOH HOH . 
F 6 HOH A 92 592 106 HOH HOH . 
F 6 HOH A 93 593 122 HOH HOH . 
F 6 HOH A 94 594 90 HOH HOH . 
F 6 HOH A 95 595 177 HOH HOH . 
F 6 HOH A 96 596 165 HOH HOH . 
F 6 HOH A 97 597 162 HOH HOH . 
F 6 HOH A 98 598 79 HOH HOH . 
F 6 HOH A 99 599 199 HOH HOH . 
F 6 HOH A 100 600 40 HOH HOH . 
F 6 HOH A 101 601 137 HOH HOH . 
F 6 HOH A 102 602 34 HOH HOH . 
F 6 HOH A 103 603 116 HOH HOH . 
F 6 HOH A 104 604 35 HOH HOH . 
F 6 HOH A 105 605 170 HOH HOH . 
F 6 HOH A 106 606 135 HOH HOH . 
F 6 HOH A 107 607 185 HOH HOH . 
F 6 HOH A 108 608 148 HOH HOH . 
F 6 HOH A 109 609 53 HOH HOH . 
F 6 HOH A 110 610 6 HOH HOH . 
F 6 HOH A 111 611 21 HOH HOH . 
F 6 HOH A 112 612 30 HOH HOH . 
F 6 HOH A 113 613 55 HOH HOH . 
F 6 HOH A 114 614 160 HOH HOH . 
F 6 HOH A 115 615 198 HOH HOH . 
F 6 HOH A 116 616 96 HOH HOH . 
F 6 HOH A 117 617 115 HOH HOH . 
F 6 HOH A 118 618 81 HOH HOH . 
F 6 HOH A 119 619 12 HOH HOH . 
F 6 HOH A 120 620 44 HOH HOH . 
F 6 HOH A 121 621 77 HOH HOH . 
F 6 HOH A 122 622 13 HOH HOH . 
F 6 HOH A 123 623 179 HOH HOH . 
F 6 HOH A 124 624 23 HOH HOH . 
F 6 HOH A 125 625 11 HOH HOH . 
F 6 HOH A 126 626 194 HOH HOH . 
F 6 HOH A 127 627 24 HOH HOH . 
F 6 HOH A 128 628 72 HOH HOH . 
F 6 HOH A 129 629 32 HOH HOH . 
F 6 HOH A 130 630 33 HOH HOH . 
F 6 HOH A 131 631 189 HOH HOH . 
F 6 HOH A 132 632 127 HOH HOH . 
F 6 HOH A 133 633 186 HOH HOH . 
F 6 HOH A 134 634 187 HOH HOH . 
F 6 HOH A 135 635 49 HOH HOH . 
F 6 HOH A 136 636 128 HOH HOH . 
F 6 HOH A 137 637 18 HOH HOH . 
F 6 HOH A 138 638 59 HOH HOH . 
F 6 HOH A 139 639 141 HOH HOH . 
F 6 HOH A 140 640 152 HOH HOH . 
F 6 HOH A 141 641 146 HOH HOH . 
F 6 HOH A 142 642 25 HOH HOH . 
F 6 HOH A 143 643 157 HOH HOH . 
F 6 HOH A 144 644 19 HOH HOH . 
F 6 HOH A 145 645 102 HOH HOH . 
F 6 HOH A 146 646 173 HOH HOH . 
F 6 HOH A 147 647 68 HOH HOH . 
F 6 HOH A 148 648 78 HOH HOH . 
F 6 HOH A 149 649 161 HOH HOH . 
F 6 HOH A 150 650 14 HOH HOH . 
F 6 HOH A 151 651 83 HOH HOH . 
F 6 HOH A 152 652 105 HOH HOH . 
F 6 HOH A 153 653 184 HOH HOH . 
F 6 HOH A 154 654 206 HOH HOH . 
F 6 HOH A 155 655 155 HOH HOH . 
F 6 HOH A 156 656 169 HOH HOH . 
F 6 HOH A 157 657 149 HOH HOH . 
F 6 HOH A 158 658 108 HOH HOH . 
F 6 HOH A 159 659 153 HOH HOH . 
F 6 HOH A 160 660 121 HOH HOH . 
F 6 HOH A 161 661 67 HOH HOH . 
F 6 HOH A 162 662 183 HOH HOH . 
F 6 HOH A 163 663 82 HOH HOH . 
F 6 HOH A 164 664 138 HOH HOH . 
F 6 HOH A 165 665 174 HOH HOH . 
F 6 HOH A 166 666 164 HOH HOH . 
F 6 HOH A 167 667 163 HOH HOH . 
G 6 HOH D 1 201 86 HOH HOH . 
G 6 HOH D 2 202 190 HOH HOH . 
G 6 HOH D 3 203 16 HOH HOH . 
G 6 HOH D 4 204 209 HOH HOH . 
G 6 HOH D 5 205 136 HOH HOH . 
G 6 HOH D 6 206 212 HOH HOH . 
G 6 HOH D 7 207 211 HOH HOH . 
G 6 HOH D 8 208 208 HOH HOH . 
G 6 HOH D 9 209 210 HOH HOH . 
G 6 HOH D 10 210 156 HOH HOH . 
G 6 HOH D 11 211 207 HOH HOH . 
G 6 HOH D 12 212 151 HOH HOH . 
G 6 HOH D 13 213 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIP . . . E 5 -0.844 8.456 12.401 1 38.46 ? C1 RIP 101 D 1 
HETATM 2 C C5 RIP . . . E 5 -1.373 10.778 12.183 1 41.57 ? C5 RIP 101 D 1 
HETATM 3 O O5 RIP . . . E 5 -0.433 9.732 11.91 1 41.88 ? O5 RIP 101 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           3 
#