data_5NWK
#
_model_server_result.job_id            aNRrCu8AiD4XVjn7ypXHUQ 
_model_server_result.datetime_utc      '2024-11-15 12:06:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nwk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":701}' 
#
_entry.id    5NWK 
#
_exptl.entry_id    5NWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              185.072 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHOSERINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NWK 
_cell.length_a            99.806 
_cell.length_b            165.661 
_cell.length_c            170.552 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA tetrameric 4 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
M,N,O,P,W,X,HA,IA,JA 1 1 
A,B,C,D,Q,R,Y,Z,AA 2 1 
E,F,G,H,S,T,BA,CA,DA 3 1 
I,J,K,L,U,V,EA,FA,GA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             X 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C SER 3 P SER 675 1_555 B N SEP 4 P SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 B C SEP 4 P SEP 676 1_555 B N ASN 5 P ASN 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 D C SER 3 Q SER 675 1_555 D N SEP 4 Q SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 D C SEP 4 Q SEP 676 1_555 D N ASN 5 Q ASN 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 F C SER 3 R SER 675 1_555 F N SEP 4 R SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 F C SEP 4 R SEP 676 1_555 F N ASN 5 R ASN 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 H C SER 3 S SER 675 1_555 H N SEP 4 S SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 H C SEP 4 S SEP 676 1_555 H N ASN 5 S ASN 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale9 J C SER 3 T SER 675 1_555 J N SEP 4 T SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 J C SEP 4 T SEP 676 1_555 J N ASN 5 T ASN 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 L C SER 3 U SER 675 1_555 L N SEP 4 U SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 L C SEP 4 U SEP 676 1_555 L N ASN 5 U ASN 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale13 N C SER 3 V SER 675 1_555 N N SEP 4 V SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale14 N C SEP 4 V SEP 676 1_555 N N ASN 5 V ASN 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale15 P N SER 3 W SER 675 1_555 X C SEP . W SEP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H8 N O6 P' 
_chem_comp.formula_weight    185.072 
_chem_comp.id                SEP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              PHOSPHOSERINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     PHOSPHONOSERINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SEP sing 384 n n 
N H SEP sing 385 n n 
N H2 SEP sing 386 n n 
CA CB SEP sing 387 n n 
CA C SEP sing 388 n n 
CA HA SEP sing 389 n n 
CB OG SEP sing 390 n n 
CB HB2 SEP sing 391 n n 
CB HB3 SEP sing 392 n n 
OG P SEP sing 393 n n 
C O SEP doub 394 n n 
C OXT SEP sing 395 n n 
OXT HXT SEP sing 396 n n 
P O1P SEP doub 397 n n 
P O2P SEP sing 398 n n 
P O3P SEP sing 399 n n 
O2P HOP2 SEP sing 400 n n 
O3P HOP3 SEP sing 401 n n 
#
_atom_sites.entry_id                     5NWK 
_atom_sites.fract_transf_matrix[1][1]    0.010019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 FSC A 1 301 0 FSC FSC . 
R 3 FSC B 1 301 0 FSC FSC . 
S 3 FSC C 1 301 0 FSC FSC . 
T 3 FSC D 1 301 0 FSC FSC . 
U 3 FSC E 1 301 0 FSC FSC . 
V 3 FSC F 1 301 0 FSC FSC . 
W 3 FSC G 1 301 0 FSC FSC . 
X 4 SEP W 1 701 676 SEP SEP . 
Y 5 HOH A 1 401 5 HOH HOH . 
Y 5 HOH A 2 402 89 HOH HOH . 
Y 5 HOH A 3 403 61 HOH HOH . 
Y 5 HOH A 4 404 66 HOH HOH . 
Y 5 HOH A 5 405 69 HOH HOH . 
Y 5 HOH A 6 406 88 HOH HOH . 
Y 5 HOH A 7 407 54 HOH HOH . 
Y 5 HOH A 8 408 86 HOH HOH . 
Y 5 HOH A 9 409 19 HOH HOH . 
Y 5 HOH A 10 410 41 HOH HOH . 
Y 5 HOH A 11 411 68 HOH HOH . 
Y 5 HOH A 12 412 67 HOH HOH . 
Y 5 HOH A 13 413 95 HOH HOH . 
Y 5 HOH A 14 414 87 HOH HOH . 
Z 5 HOH B 1 401 104 HOH HOH . 
Z 5 HOH B 2 402 70 HOH HOH . 
Z 5 HOH B 3 403 72 HOH HOH . 
Z 5 HOH B 4 404 80 HOH HOH . 
Z 5 HOH B 5 405 39 HOH HOH . 
Z 5 HOH B 6 406 74 HOH HOH . 
Z 5 HOH B 7 407 48 HOH HOH . 
Z 5 HOH B 8 408 22 HOH HOH . 
Z 5 HOH B 9 409 73 HOH HOH . 
Z 5 HOH B 10 410 40 HOH HOH . 
Z 5 HOH B 11 411 15 HOH HOH . 
AA 5 HOH Q 1 701 94 HOH HOH . 
BA 5 HOH C 1 401 9 HOH HOH . 
BA 5 HOH C 2 402 62 HOH HOH . 
BA 5 HOH C 3 403 49 HOH HOH . 
BA 5 HOH C 4 404 7 HOH HOH . 
BA 5 HOH C 5 405 81 HOH HOH . 
BA 5 HOH C 6 406 21 HOH HOH . 
BA 5 HOH C 7 407 51 HOH HOH . 
BA 5 HOH C 8 408 3 HOH HOH . 
BA 5 HOH C 9 409 52 HOH HOH . 
BA 5 HOH C 10 410 29 HOH HOH . 
BA 5 HOH C 11 411 98 HOH HOH . 
BA 5 HOH C 12 412 25 HOH HOH . 
BA 5 HOH C 13 413 85 HOH HOH . 
BA 5 HOH C 14 414 50 HOH HOH . 
BA 5 HOH C 15 415 44 HOH HOH . 
CA 5 HOH R 1 701 71 HOH HOH . 
DA 5 HOH D 1 401 32 HOH HOH . 
DA 5 HOH D 2 402 75 HOH HOH . 
DA 5 HOH D 3 403 18 HOH HOH . 
DA 5 HOH D 4 404 17 HOH HOH . 
DA 5 HOH D 5 405 99 HOH HOH . 
DA 5 HOH D 6 406 82 HOH HOH . 
DA 5 HOH D 7 407 30 HOH HOH . 
DA 5 HOH D 8 408 46 HOH HOH . 
DA 5 HOH D 9 409 45 HOH HOH . 
DA 5 HOH D 10 410 26 HOH HOH . 
DA 5 HOH D 11 411 20 HOH HOH . 
DA 5 HOH D 12 412 33 HOH HOH . 
DA 5 HOH D 13 413 47 HOH HOH . 
EA 5 HOH E 1 401 31 HOH HOH . 
EA 5 HOH E 2 402 2 HOH HOH . 
EA 5 HOH E 3 403 14 HOH HOH . 
EA 5 HOH E 4 404 28 HOH HOH . 
EA 5 HOH E 5 405 36 HOH HOH . 
EA 5 HOH E 6 406 76 HOH HOH . 
EA 5 HOH E 7 407 1 HOH HOH . 
EA 5 HOH E 8 408 78 HOH HOH . 
EA 5 HOH E 9 409 84 HOH HOH . 
EA 5 HOH E 10 410 79 HOH HOH . 
EA 5 HOH E 11 411 43 HOH HOH . 
EA 5 HOH E 12 412 77 HOH HOH . 
EA 5 HOH E 13 413 83 HOH HOH . 
EA 5 HOH E 14 414 4 HOH HOH . 
EA 5 HOH E 15 415 53 HOH HOH . 
EA 5 HOH E 16 416 12 HOH HOH . 
EA 5 HOH E 17 417 6 HOH HOH . 
EA 5 HOH E 18 418 34 HOH HOH . 
EA 5 HOH E 19 419 11 HOH HOH . 
EA 5 HOH E 20 420 10 HOH HOH . 
EA 5 HOH E 21 421 16 HOH HOH . 
FA 5 HOH T 1 701 96 HOH HOH . 
FA 5 HOH T 2 702 93 HOH HOH . 
GA 5 HOH F 1 401 56 HOH HOH . 
GA 5 HOH F 2 402 91 HOH HOH . 
GA 5 HOH F 3 403 92 HOH HOH . 
GA 5 HOH F 4 404 102 HOH HOH . 
GA 5 HOH F 5 405 90 HOH HOH . 
GA 5 HOH F 6 406 57 HOH HOH . 
GA 5 HOH F 7 407 58 HOH HOH . 
GA 5 HOH F 8 408 65 HOH HOH . 
GA 5 HOH F 9 409 8 HOH HOH . 
GA 5 HOH F 10 410 101 HOH HOH . 
GA 5 HOH F 11 411 60 HOH HOH . 
GA 5 HOH F 12 412 64 HOH HOH . 
GA 5 HOH F 13 413 100 HOH HOH . 
GA 5 HOH F 14 414 59 HOH HOH . 
HA 5 HOH G 1 401 42 HOH HOH . 
HA 5 HOH G 2 402 23 HOH HOH . 
HA 5 HOH G 3 403 55 HOH HOH . 
HA 5 HOH G 4 404 103 HOH HOH . 
HA 5 HOH G 5 405 37 HOH HOH . 
HA 5 HOH G 6 406 38 HOH HOH . 
HA 5 HOH G 7 407 24 HOH HOH . 
IA 5 HOH V 1 701 97 HOH HOH . 
JA 5 HOH H 1 301 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SEP . . . X 4 -30.423 6.321 -25.332 1 122.47 ? N SEP 701 W 1 
HETATM 2 C CA SEP . . . X 4 -30.376 7.036 -24.071 1 134.69 ? CA SEP 701 W 1 
HETATM 3 C CB SEP . . . X 4 -29.381 8.185 -24.176 1 131.55 ? CB SEP 701 W 1 
HETATM 4 O OG SEP . . . X 4 -28.081 7.722 -23.818 1 123.52 ? OG SEP 701 W 1 
HETATM 5 C C SEP . . . X 4 -31.737 7.581 -23.749 1 145.05 ? C SEP 701 W 1 
HETATM 6 O O SEP . . . X 4 -32.634 7.574 -24.619 1 142.83 ? O SEP 701 W 1 
HETATM 7 P P SEP . . . X 4 -26.779 8.258 -24.598 1 119.05 ? P SEP 701 W 1 
HETATM 8 O O1P SEP . . . X 4 -27.323 8.757 -25.915 1 115.26 ? O1P SEP 701 W 1 
HETATM 9 O O2P SEP . . . X 4 -25.895 7.039 -24.71 1 117.4 -1 O2P SEP 701 W 1 
HETATM 10 O O3P SEP . . . X 4 -26.235 9.341 -23.698 1 127.41 ? O3P SEP 701 W 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           10 
#