data_5NWN
#
_model_server_result.job_id            O7LDd9GJth8DnfAyGDIZZg 
_model_server_result.datetime_utc      '2025-07-15 17:13:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nwn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":600}' 
#
_entry.id    5NWN 
#
_exptl.entry_id    5NWN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              585.67 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NWN 
_cell.length_a            84.11 
_cell.length_b            197.12 
_cell.length_c            214.11 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NWN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 38 A CYS 24 1_555 E CBA LBV . A LBV 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? 
covale ? covale2 B SG CYS 38 B CYS 24 1_555 F CBA LBV . B LBV 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
covale ? covale3 C SG CYS 38 C CYS 24 1_555 G CBA LBV . C LBV 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
covale ? covale4 D SG CYS 38 D CYS 24 1_555 H CBA LBV . D LBV 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
#
_chem_comp.formula           'C33 H37 N4 O6 1' 
_chem_comp.formula_weight    585.67 
_chem_comp.id                LBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2(R),3(E)- PHYTOCHROMOBILIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A N_A LBV sing 171 n n 
C1A C2A LBV sing 172 n n 
C1B C2B LBV doub 173 n y 
C1B CHB LBV sing 174 n n 
O1B CGB LBV doub 175 n n 
C1C CHC LBV doub 176 z n 
C1D CHD LBV doub 177 z n 
C2A CMA LBV sing 178 n n 
C2A C3A LBV sing 179 n n 
C2B CMB LBV sing 180 n n 
C2C C1C LBV sing 181 n n 
O2C CGC LBV doub 182 n n 
C2D C1D LBV sing 183 n n 
C2D CMD LBV sing 184 n n 
C3A CAA LBV doub 185 e n 
C3B C2B LBV sing 186 n y 
C3B CAB LBV sing 187 n n 
C3C C2C LBV doub 188 n n 
C3C C4C LBV sing 189 n n 
C3D C2D LBV doub 190 n n 
C4A C3A LBV sing 191 n n 
C4A CHB LBV doub 192 z n 
C4B C3B LBV doub 193 n y 
C4B N_B LBV sing 194 n y 
C4C N_C LBV doub 195 n n 
C4D C3D LBV sing 196 n n 
C4D N_D LBV sing 197 n n 
CAA CBA LBV sing 198 n n 
CAC C2C LBV sing 199 n n 
CAC CBC LBV sing 200 n n 
CAD C3D LBV sing 201 n n 
CBB CAB LBV sing 202 n n 
CBB CGB LBV sing 203 n n 
CBD CAD LBV doub 204 n n 
CGB O2B LBV sing 205 n n 
CGC O1C LBV sing 206 n n 
CGC CBC LBV sing 207 n n 
CHC C4B LBV sing 208 n n 
CHD C4C LBV sing 209 n n 
CMC C3C LBV sing 210 n n 
N_A C4A LBV sing 211 n n 
O_A C1A LBV doub 212 n n 
N_B C1B LBV sing 213 n y 
N_C C1C LBV sing 214 n n 
N_D C1D LBV sing 215 n n 
O_D C4D LBV doub 216 n n 
O1C HO1C LBV sing 217 n n 
C2A H2A LBV sing 218 n n 
O2B HO2B LBV sing 219 n n 
CAA HAA1 LBV sing 220 n n 
CAB HAB1 LBV sing 221 n n 
CAB HAB2 LBV sing 222 n n 
CAC HAC1 LBV sing 223 n n 
CAC HAC2 LBV sing 224 n n 
CAD HAD1 LBV sing 225 n n 
CBA HBA1 LBV sing 226 n n 
CBA HBA2 LBV sing 227 n n 
CBA HBA3 LBV sing 228 n n 
CBB HBB1 LBV sing 229 n n 
CBB HBB2 LBV sing 230 n n 
CBC HBC1 LBV sing 231 n n 
CBC HBC2 LBV sing 232 n n 
CBD HBD1 LBV sing 233 n n 
CBD HBD2 LBV sing 234 n n 
CHB HHB1 LBV sing 235 n n 
CHC HHC1 LBV sing 236 n n 
CHD HHD1 LBV sing 237 n n 
CMA HMA1 LBV sing 238 n n 
CMA HMA2 LBV sing 239 n n 
CMA HMA3 LBV sing 240 n n 
CMB HMB1 LBV sing 241 n n 
CMB HMB2 LBV sing 242 n n 
CMB HMB3 LBV sing 243 n n 
CMC HMC1 LBV sing 244 n n 
CMC HMC2 LBV sing 245 n n 
CMC HMC3 LBV sing 246 n n 
CMD HMD1 LBV sing 247 n n 
CMD HMD2 LBV sing 248 n n 
CMD HMD3 LBV sing 249 n n 
N_A HAD LBV sing 250 n n 
N_B HAE LBV sing 251 n n 
N_C HAF LBV sing 252 n n 
N_D HAG LBV sing 253 n n 
#
_atom_sites.entry_id                     5NWN 
_atom_sites.fract_transf_matrix[1][1]    0.011889 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005073 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00467 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LBV A 1 600 600 LBV LBV . 
F 2 LBV B 1 600 600 LBV LBV . 
G 2 LBV C 1 600 600 LBV LBV . 
H 2 LBV D 1 600 600 LBV LBV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A LBV . . . F 2 -7.439 222.203 -19.122 1 147.64 ? C1A LBV 600 B 1 
HETATM 2 C C1B LBV . . . F 2 -3.427 224.026 -20.407 1 117.98 ? C1B LBV 600 B 1 
HETATM 3 O O1B LBV . . . F 2 0.641 228.641 -22.225 1 119.58 ? O1B LBV 600 B 1 
HETATM 4 C C1C LBV . . . F 2 -2.011 225.487 -16.331 1 140.57 ? C1C LBV 600 B 1 
HETATM 5 O O1C LBV . . . F 2 -2.294 229.87 -14.777 1 202.04 ? O1C LBV 600 B 1 
HETATM 6 C C1D LBV . . . F 2 -5.088 224.517 -12.81 1 144.41 ? C1D LBV 600 B 1 
HETATM 7 C C2A LBV . . . F 2 -7.7 221.399 -20.416 1 147.99 ? C2A LBV 600 B 1 
HETATM 8 C C2B LBV . . . F 2 -2.396 224.62 -21.12 1 118.19 ? C2B LBV 600 B 1 
HETATM 9 O O2B LBV . . . F 2 1.514 228.833 -20.236 1 95.98 ? O2B LBV 600 B 1 
HETATM 10 C C2C LBV . . . F 2 -1.475 226.072 -15.17 1 148.75 ? C2C LBV 600 B 1 
HETATM 11 O O2C LBV . . . F 2 -0.971 229.242 -13.18 1 177.34 ? O2C LBV 600 B 1 
HETATM 12 C C2D LBV . . . F 2 -5.86 223.684 -11.991 1 147.93 ? C2D LBV 600 B 1 
HETATM 13 C C3A LBV . . . F 2 -6.49 221.708 -21.166 1 142.41 ? C3A LBV 600 B 1 
HETATM 14 C C3B LBV . . . F 2 -1.591 225.267 -20.19 1 111.83 ? C3B LBV 600 B 1 
HETATM 15 C C3C LBV . . . F 2 -2.264 225.673 -14.075 1 155.32 ? C3C LBV 600 B 1 
HETATM 16 C C3D LBV . . . F 2 -6.34 224.463 -10.959 1 148.95 ? C3D LBV 600 B 1 
HETATM 17 C C4A LBV . . . F 2 -5.652 222.677 -20.526 1 136.24 ? C4A LBV 600 B 1 
HETATM 18 C C4B LBV . . . F 2 -2.144 225.066 -18.922 1 115.08 ? C4B LBV 600 B 1 
HETATM 19 C C4C LBV . . . F 2 -3.265 224.852 -14.613 1 155.63 ? C4C LBV 600 B 1 
HETATM 20 C C4D LBV . . . F 2 -5.851 225.742 -11.191 1 147.41 ? C4D LBV 600 B 1 
HETATM 21 C CAA LBV . . . F 2 -6.152 221.019 -22.322 1 153.5 ? CAA LBV 600 B 1 
HETATM 22 C CAB LBV . . . F 2 -0.351 226.052 -20.487 1 108.29 ? CAB LBV 600 B 1 
HETATM 23 C CAC LBV . . . F 2 -0.264 226.987 -15.088 1 153.77 ? CAC LBV 600 B 1 
HETATM 24 C CAD LBV . . . F 2 -7.229 223.954 -9.849 1 151.95 ? CAD LBV 600 B 1 
HETATM 25 C CBA LBV . . . F 2 -7.073 220.021 -22.96 1 167.85 ? CBA LBV 600 B 1 
HETATM 26 C CBB LBV . . . F 2 -0.525 227.55 -20.449 1 110.06 ? CBB LBV 600 B 1 
HETATM 27 C CBC LBV . . . F 2 -0.504 228.441 -15.388 1 159.97 ? CBC LBV 600 B 1 
HETATM 28 C CBD LBV . . . F 2 -7.432 224.613 -8.652 1 154.87 ? CBD LBV 600 B 1 
HETATM 29 C CGB LBV . . . F 2 0.604 228.386 -20.993 1 109.24 ? CGB LBV 600 B 1 
HETATM 30 C CGC LBV . . . F 2 -1.293 229.223 -14.393 1 176.65 ? CGC LBV 600 B 1 
HETATM 31 C CHB LBV . . . F 2 -4.506 223.221 -21.119 1 125.84 ? CHB LBV 600 B 1 
HETATM 32 C CHC LBV . . . F 2 -1.515 225.643 -17.645 1 122.47 ? CHC LBV 600 B 1 
HETATM 33 C CHD LBV . . . F 2 -4.426 224.087 -13.962 1 151.8 ? CHD LBV 600 B 1 
HETATM 34 C CMA LBV . . . F 2 -8.9 221.953 -21.119 1 154.21 ? CMA LBV 600 B 1 
HETATM 35 C CMB LBV . . . F 2 -2.22 224.544 -22.606 1 126.35 ? CMB LBV 600 B 1 
HETATM 36 C CMC LBV . . . F 2 -2.015 226.077 -12.656 1 160.49 ? CMC LBV 600 B 1 
HETATM 37 C CMD LBV . . . F 2 -6.133 222.223 -12.162 1 157.03 ? CMD LBV 600 B 1 
HETATM 38 N N_A LBV . . . F 2 -6.171 222.977 -19.249 1 142.35 ? N_A LBV 600 B 1 
HETATM 39 O O_A LBV . . . F 2 -8.17 222.213 -18.138 1 149.61 ? O_A LBV 600 B 1 
HETATM 40 N N_B LBV . . . F 2 -3.259 224.308 -19.091 1 117.13 ? N_B LBV 600 B 1 
HETATM 41 N N_C LBV . . . F 2 -3.083 224.766 -15.948 1 153.92 ? N_C LBV 600 B 1 
HETATM 42 N N_D LBV . . . F 2 -5.107 225.756 -12.308 1 140.24 ? N_D LBV 600 B 1 
HETATM 43 O O_D LBV . . . F 2 -6.05 226.71 -10.514 1 154.12 ? O_D LBV 600 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           43 
#