data_5NWT # _model_server_result.job_id Qidm6aTQiAcNdneWgYbG1w _model_server_result.datetime_utc '2024-11-22 13:27:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nwt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1503}' # _entry.id 5NWT # _exptl.entry_id 5NWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NWT _cell.length_a 208.477 _cell.length_b 151.525 _cell.length_c 195.279 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 70 D CYS 70 1_555 D SG CYS 85 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 F C LEU 124 M LEU 124 1_555 F N MSE 125 M MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 F C MSE 125 M MSE 125 1_555 F N TRP 126 M TRP 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 F C LEU 235 M LEU 235 1_555 F N MSE 236 M MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 F C MSE 236 M MSE 236 1_555 F N ARG 237 M ARG 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 F C ALA 305 M ALA 305 1_555 F N MSE 306 M MSE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 F C MSE 306 M MSE 306 1_555 F N GLY 307 M GLY 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 F C TYR 361 M TYR 361 1_555 F N MSE 362 M MSE 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 F C MSE 362 M MSE 362 1_555 F N LYS 363 M LYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 F C PRO 364 M PRO 364 1_555 F N MSE 365 M MSE 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 F C MSE 365 M MSE 365 1_555 F N VAL 366 M VAL 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 F C GLU 375 M GLU 375 1_555 F N MSE 376 M MSE 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 F C MSE 376 M MSE 376 1_555 F N HIS 377 M HIS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 F C SER 444 M SER 444 1_555 F N MSE 445 M MSE 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 F C MSE 445 M MSE 445 1_555 F N LEU 446 M LEU 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 F C ILE 451 M ILE 451 1_555 F N MSE 452 M MSE 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 F C MSE 452 M MSE 452 1_555 F N VAL 453 M VAL 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 D SG CYS 70 D CYS 70 1_555 G ZN ZN . D ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 D SG CYS 85 D CYS 85 1_555 G ZN ZN . D ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 D OD2 ASP 462 D ASP 462 1_555 H MG MG . D MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc4 D SG CYS 814 D CYS 814 1_555 I ZN ZN . D ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc5 D SG CYS 888 D CYS 888 1_555 I ZN ZN . D ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc6 D SG CYS 895 D CYS 895 1_555 I ZN ZN . D ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NWT _atom_sites.fract_transf_matrix[1][1] 0.004797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 ZN D 1 1501 1501 ZN ZN . H 7 MG D 1 1502 1502 MG MG . I 6 ZN D 1 1503 1503 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 6 _atom_site.Cartn_x 266.801 _atom_site.Cartn_y -2.279 _atom_site.Cartn_z 58.388 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 156.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1503 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #