data_5NXC
#
_model_server_result.job_id            T0ysDYk9hbBNKdn4ybYE2Q 
_model_server_result.datetime_utc      '2025-03-06 21:35:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nxc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    5NXC 
#
_exptl.entry_id    5NXC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              419.48 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-azanyl-2-cyclohexyl-~{N}-[2-(1-methylpyrazol-4-yl)-9-oxidanylidene-3,10,11-triazatricyclo[6.4.1.0^{4,13}]trideca-1,4,6,8(13),11-pentaen-6-yl]ethanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NXC 
_cell.length_a            88.387 
_cell.length_b            95.836 
_cell.length_c            84.392 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NXC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H25 N7 O2' 
_chem_comp.formula_weight    419.48 
_chem_comp.id                9DB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-azanyl-2-cyclohexyl-~{N}-[2-(1-methylpyrazol-4-yl)-9-oxidanylidene-3,10,11-triazatricyclo[6.4.1.0^{4,13}]trideca-1,4,6,8(13),11-pentaen-6-yl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N 9DB sing 1 n n 
N C1 9DB sing 2 n y 
N N1 9DB sing 3 n y 
C1 C2 9DB doub 4 n y 
N4 C9 9DB sing 5 n n 
N1 C3 9DB doub 6 n y 
C2 C3 9DB sing 7 n y 
C2 C4 9DB sing 8 n n 
N2 C4 9DB sing 9 n y 
N2 C5 9DB sing 10 n y 
O C8 9DB doub 11 n n 
C9 C8 9DB sing 12 n n 
C9 C10 9DB sing 13 n n 
C8 N3 9DB sing 14 n n 
C4 C20 9DB doub 15 n y 
C11 C10 9DB sing 16 n n 
C11 C12 9DB sing 17 n n 
C6 C5 9DB doub 18 n y 
C6 C7 9DB sing 19 n y 
C5 C21 9DB sing 20 n y 
C10 C15 9DB sing 21 n n 
C12 C13 9DB sing 22 n n 
N3 C7 9DB sing 23 n n 
C7 C16 9DB doub 24 n y 
C20 C21 9DB sing 25 n y 
C20 C19 9DB sing 26 n n 
C21 C17 9DB doub 27 n y 
C15 C14 9DB sing 28 n n 
C13 C14 9DB sing 29 n n 
C16 C17 9DB sing 30 n y 
C19 N6 9DB doub 31 n n 
C17 C18 9DB sing 32 n n 
N6 N5 9DB sing 33 n n 
C18 N5 9DB sing 34 n n 
C18 O1 9DB doub 35 n n 
C1 H1 9DB sing 36 n n 
C3 H2 9DB sing 37 n n 
C6 H3 9DB sing 38 n n 
N5 H4 9DB sing 39 n n 
C19 H5 9DB sing 40 n n 
C H6 9DB sing 41 n n 
C H7 9DB sing 42 n n 
C H8 9DB sing 43 n n 
N2 H9 9DB sing 44 n n 
C16 H10 9DB sing 45 n n 
N3 H11 9DB sing 46 n n 
C9 H12 9DB sing 47 n n 
N4 H13 9DB sing 48 n n 
N4 H14 9DB sing 49 n n 
C10 H16 9DB sing 50 n n 
C15 H17 9DB sing 51 n n 
C15 H18 9DB sing 52 n n 
C14 H19 9DB sing 53 n n 
C14 H20 9DB sing 54 n n 
C13 H21 9DB sing 55 n n 
C13 H22 9DB sing 56 n n 
C12 H23 9DB sing 57 n n 
C12 H24 9DB sing 58 n n 
C11 H25 9DB sing 59 n n 
C11 H26 9DB sing 60 n n 
#
_atom_sites.entry_id                     5NXC 
_atom_sites.fract_transf_matrix[1][1]    0.011314 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010434 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9DB L 1 701 1 9DB PF0 . 
C 3 HOH L 1 801 24 HOH HOH . 
C 3 HOH L 2 802 11 HOH HOH . 
C 3 HOH L 3 803 42 HOH HOH . 
C 3 HOH L 4 804 32 HOH HOH . 
C 3 HOH L 5 805 14 HOH HOH . 
C 3 HOH L 6 806 22 HOH HOH . 
C 3 HOH L 7 807 34 HOH HOH . 
C 3 HOH L 8 808 17 HOH HOH . 
C 3 HOH L 9 809 20 HOH HOH . 
C 3 HOH L 10 810 1 HOH HOH . 
C 3 HOH L 11 811 7 HOH HOH . 
C 3 HOH L 12 812 21 HOH HOH . 
C 3 HOH L 13 813 28 HOH HOH . 
C 3 HOH L 14 814 4 HOH HOH . 
C 3 HOH L 15 815 13 HOH HOH . 
C 3 HOH L 16 816 16 HOH HOH . 
C 3 HOH L 17 817 9 HOH HOH . 
C 3 HOH L 18 818 29 HOH HOH . 
C 3 HOH L 19 819 18 HOH HOH . 
C 3 HOH L 20 820 15 HOH HOH . 
C 3 HOH L 21 821 5 HOH HOH . 
C 3 HOH L 22 822 6 HOH HOH . 
C 3 HOH L 23 823 8 HOH HOH . 
C 3 HOH L 24 824 12 HOH HOH . 
C 3 HOH L 25 825 38 HOH HOH . 
C 3 HOH L 26 826 3 HOH HOH . 
C 3 HOH L 27 827 44 HOH HOH . 
C 3 HOH L 28 828 27 HOH HOH . 
C 3 HOH L 29 829 33 HOH HOH . 
C 3 HOH L 30 830 2 HOH HOH . 
C 3 HOH L 31 831 30 HOH HOH . 
C 3 HOH L 32 832 10 HOH HOH . 
C 3 HOH L 33 833 23 HOH HOH . 
C 3 HOH L 34 834 37 HOH HOH . 
C 3 HOH L 35 835 31 HOH HOH . 
C 3 HOH L 36 836 43 HOH HOH . 
C 3 HOH L 37 837 35 HOH HOH . 
C 3 HOH L 38 838 19 HOH HOH . 
C 3 HOH L 39 839 25 HOH HOH . 
C 3 HOH L 40 840 40 HOH HOH . 
C 3 HOH L 41 841 39 HOH HOH . 
C 3 HOH L 42 842 36 HOH HOH . 
C 3 HOH L 43 843 41 HOH HOH . 
C 3 HOH L 44 844 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9DB . . . B 2 15.037 12.173 8.535 1 29.32 ? C1 9DB 701 L 1 
HETATM 2 C C2 9DB . . . B 2 14.779 12.629 9.82 1 26.93 ? C2 9DB 701 L 1 
HETATM 3 C C3 9DB . . . B 2 13.776 11.747 10.305 1 28.33 ? C3 9DB 701 L 1 
HETATM 4 C C4 9DB . . . B 2 15.436 13.702 10.504 1 23.39 ? C4 9DB 701 L 1 
HETATM 5 C C5 9DB . . . B 2 16.857 15.296 10.768 1 23.76 ? C5 9DB 701 L 1 
HETATM 6 C C6 9DB . . . B 2 17.856 16.246 10.561 1 25.31 ? C6 9DB 701 L 1 
HETATM 7 C C7 9DB . . . B 2 18.263 17.059 11.617 1 25.37 ? C7 9DB 701 L 1 
HETATM 8 C C8 9DB . . . B 2 20.231 18.029 10.49 1 32.52 ? C8 9DB 701 L 1 
HETATM 9 O O1 9DB . . . B 2 16.645 16.549 15.357 1 19.86 ? O1 9DB 701 L 1 
HETATM 10 C C18 9DB . . . B 2 16.138 15.873 14.463 1 19.61 ? C18 9DB 701 L 1 
HETATM 11 N N5 9DB . . . B 2 15.203 14.995 14.892 1 17.42 ? N5 9DB 701 L 1 
HETATM 12 N N6 9DB . . . B 2 14.518 14.018 14.2 1 19.05 ? N6 9DB 701 L 1 
HETATM 13 C C19 9DB . . . B 2 14.552 13.651 12.88 1 20.28 ? C19 9DB 701 L 1 
HETATM 14 C C20 9DB . . . B 2 15.304 14.094 11.87 1 21.41 ? C20 9DB 701 L 1 
HETATM 15 N N1 9DB . . . B 2 13.441 10.825 9.41 1 30.63 ? N1 9DB 701 L 1 
HETATM 16 N N 9DB . . . B 2 14.251 11.107 8.337 1 30.97 ? N 9DB 701 L 1 
HETATM 17 C C 9DB . . . B 2 14.242 10.204 7.193 1 32.31 ? C 9DB 701 L 1 
HETATM 18 C C21 9DB . . . B 2 16.261 15.157 11.991 1 21.49 ? C21 9DB 701 L 1 
HETATM 19 N N2 9DB . . . B 2 16.364 14.408 9.828 1 24.53 ? N2 9DB 701 L 1 
HETATM 20 C C17 9DB . . . B 2 16.645 15.997 13.058 1 21.88 ? C17 9DB 701 L 1 
HETATM 21 C C16 9DB . . . B 2 17.617 16.974 12.845 1 22.64 ? C16 9DB 701 L 1 
HETATM 22 N N3 9DB . . . B 2 19.332 17.965 11.49 1 27.1 ? N3 9DB 701 L 1 
HETATM 23 O O 9DB . . . B 2 20.636 17.043 9.885 1 27.53 ? O 9DB 701 L 1 
HETATM 24 C C9 9DB . . . B 2 20.902 19.38 10.285 1 36.24 ? C9 9DB 701 L 1 
HETATM 25 N N4 9DB . . . B 2 21.161 19.65 8.86 1 41 ? N4 9DB 701 L 1 
HETATM 26 C C10 9DB . . . B 2 22.12 19.581 11.199 1 37.12 ? C10 9DB 701 L 1 
HETATM 27 C C15 9DB . . . B 2 22.025 18.807 12.518 1 38.67 ? C15 9DB 701 L 1 
HETATM 28 C C14 9DB . . . B 2 23.228 19.055 13.432 1 37.92 ? C14 9DB 701 L 1 
HETATM 29 C C13 9DB . . . B 2 24.515 18.756 12.73 1 39.68 ? C13 9DB 701 L 1 
HETATM 30 C C12 9DB . . . B 2 24.608 19.53 11.416 1 43.05 ? C12 9DB 701 L 1 
HETATM 31 C C11 9DB . . . B 2 23.425 19.223 10.506 1 40.88 ? C11 9DB 701 L 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#