data_5NY6 # _model_server_result.job_id dZkq-s7K6sGgouovFfxM2g _model_server_result.datetime_utc '2024-11-13 06:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ny6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5NY6 # _exptl.entry_id 5NY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.23 _cell.angle_gamma 90 _cell.entry_id 5NY6 _cell.length_a 42.013 _cell.length_b 41.107 _cell.length_c 72.077 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE1 HIS 1 A HIS 3 1_555 D O2 R92 . A R92 303 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? metalc ? metalc1 A NE2 HIS 92 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 A ND1 HIS 117 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N1 9EB . A 9EB 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.925 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C N1 9EB . A 9EB 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C S 9EB . A 9EB 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.999 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NY6 _atom_sites.fract_transf_matrix[1][1] 0.023802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006036 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 9EB A 1 302 1 9EB R12 . D 4 R92 A 1 303 1 R92 R92 . E 5 HOH A 1 401 552 HOH HOH . E 5 HOH A 2 402 566 HOH HOH . E 5 HOH A 3 403 637 HOH HOH . E 5 HOH A 4 404 596 HOH HOH . E 5 HOH A 5 405 441 HOH HOH . E 5 HOH A 6 406 489 HOH HOH . E 5 HOH A 7 407 408 HOH HOH . E 5 HOH A 8 408 498 HOH HOH . E 5 HOH A 9 409 591 HOH HOH . E 5 HOH A 10 410 555 HOH HOH . E 5 HOH A 11 411 588 HOH HOH . E 5 HOH A 12 412 58 HOH HOH . E 5 HOH A 13 413 601 HOH HOH . E 5 HOH A 14 414 638 HOH HOH . E 5 HOH A 15 415 595 HOH HOH . E 5 HOH A 16 416 451 HOH HOH . E 5 HOH A 17 417 7 HOH HOH . E 5 HOH A 18 418 578 HOH HOH . E 5 HOH A 19 419 34 HOH HOH . E 5 HOH A 20 420 538 HOH HOH . E 5 HOH A 21 421 526 HOH HOH . E 5 HOH A 22 422 438 HOH HOH . E 5 HOH A 23 423 583 HOH HOH . E 5 HOH A 24 424 554 HOH HOH . E 5 HOH A 25 425 31 HOH HOH . E 5 HOH A 26 426 454 HOH HOH . E 5 HOH A 27 427 411 HOH HOH . E 5 HOH A 28 428 647 HOH HOH . E 5 HOH A 29 429 463 HOH HOH . E 5 HOH A 30 430 586 HOH HOH . E 5 HOH A 31 431 500 HOH HOH . E 5 HOH A 32 432 49 HOH HOH . E 5 HOH A 33 433 507 HOH HOH . E 5 HOH A 34 434 557 HOH HOH . E 5 HOH A 35 435 414 HOH HOH . E 5 HOH A 36 436 11 HOH HOH . E 5 HOH A 37 437 590 HOH HOH . E 5 HOH A 38 438 18 HOH HOH . E 5 HOH A 39 439 445 HOH HOH . E 5 HOH A 40 440 52 HOH HOH . E 5 HOH A 41 441 655 HOH HOH . E 5 HOH A 42 442 462 HOH HOH . E 5 HOH A 43 443 429 HOH HOH . E 5 HOH A 44 444 457 HOH HOH . E 5 HOH A 45 445 48 HOH HOH . E 5 HOH A 46 446 477 HOH HOH . E 5 HOH A 47 447 4 HOH HOH . E 5 HOH A 48 448 426 HOH HOH . E 5 HOH A 49 449 576 HOH HOH . E 5 HOH A 50 450 452 HOH HOH . E 5 HOH A 51 451 484 HOH HOH . E 5 HOH A 52 452 616 HOH HOH . E 5 HOH A 53 453 549 HOH HOH . E 5 HOH A 54 454 28 HOH HOH . E 5 HOH A 55 455 600 HOH HOH . E 5 HOH A 56 456 494 HOH HOH . E 5 HOH A 57 457 460 HOH HOH . E 5 HOH A 58 458 468 HOH HOH . E 5 HOH A 59 459 472 HOH HOH . E 5 HOH A 60 460 589 HOH HOH . E 5 HOH A 61 461 571 HOH HOH . E 5 HOH A 62 462 416 HOH HOH . E 5 HOH A 63 463 626 HOH HOH . E 5 HOH A 64 464 585 HOH HOH . E 5 HOH A 65 465 518 HOH HOH . E 5 HOH A 66 466 648 HOH HOH . E 5 HOH A 67 467 611 HOH HOH . E 5 HOH A 68 468 443 HOH HOH . E 5 HOH A 69 469 437 HOH HOH . E 5 HOH A 70 470 57 HOH HOH . E 5 HOH A 71 471 3 HOH HOH . E 5 HOH A 72 472 561 HOH HOH . E 5 HOH A 73 473 449 HOH HOH . E 5 HOH A 74 474 415 HOH HOH . E 5 HOH A 75 475 506 HOH HOH . E 5 HOH A 76 476 504 HOH HOH . E 5 HOH A 77 477 424 HOH HOH . E 5 HOH A 78 478 654 HOH HOH . E 5 HOH A 79 479 547 HOH HOH . E 5 HOH A 80 480 419 HOH HOH . E 5 HOH A 81 481 580 HOH HOH . E 5 HOH A 82 482 404 HOH HOH . E 5 HOH A 83 483 479 HOH HOH . E 5 HOH A 84 484 407 HOH HOH . E 5 HOH A 85 485 59 HOH HOH . E 5 HOH A 86 486 25 HOH HOH . E 5 HOH A 87 487 610 HOH HOH . E 5 HOH A 88 488 403 HOH HOH . E 5 HOH A 89 489 597 HOH HOH . E 5 HOH A 90 490 487 HOH HOH . E 5 HOH A 91 491 539 HOH HOH . E 5 HOH A 92 492 492 HOH HOH . E 5 HOH A 93 493 26 HOH HOH . E 5 HOH A 94 494 21 HOH HOH . E 5 HOH A 95 495 481 HOH HOH . E 5 HOH A 96 496 39 HOH HOH . E 5 HOH A 97 497 476 HOH HOH . E 5 HOH A 98 498 410 HOH HOH . E 5 HOH A 99 499 473 HOH HOH . E 5 HOH A 100 500 20 HOH HOH . E 5 HOH A 101 501 563 HOH HOH . E 5 HOH A 102 502 442 HOH HOH . E 5 HOH A 103 503 614 HOH HOH . E 5 HOH A 104 504 486 HOH HOH . E 5 HOH A 105 505 54 HOH HOH . E 5 HOH A 106 506 469 HOH HOH . E 5 HOH A 107 507 428 HOH HOH . E 5 HOH A 108 508 510 HOH HOH . E 5 HOH A 109 509 420 HOH HOH . E 5 HOH A 110 510 405 HOH HOH . E 5 HOH A 111 511 433 HOH HOH . E 5 HOH A 112 512 15 HOH HOH . E 5 HOH A 113 513 402 HOH HOH . E 5 HOH A 114 514 499 HOH HOH . E 5 HOH A 115 515 409 HOH HOH . E 5 HOH A 116 516 401 HOH HOH . E 5 HOH A 117 517 465 HOH HOH . E 5 HOH A 118 518 439 HOH HOH . E 5 HOH A 119 519 493 HOH HOH . E 5 HOH A 120 520 485 HOH HOH . E 5 HOH A 121 521 509 HOH HOH . E 5 HOH A 122 522 530 HOH HOH . E 5 HOH A 123 523 496 HOH HOH . E 5 HOH A 124 524 653 HOH HOH . E 5 HOH A 125 525 495 HOH HOH . E 5 HOH A 126 526 474 HOH HOH . E 5 HOH A 127 527 435 HOH HOH . E 5 HOH A 128 528 646 HOH HOH . E 5 HOH A 129 529 548 HOH HOH . E 5 HOH A 130 530 464 HOH HOH . E 5 HOH A 131 531 432 HOH HOH . E 5 HOH A 132 532 458 HOH HOH . E 5 HOH A 133 533 546 HOH HOH . E 5 HOH A 134 534 579 HOH HOH . E 5 HOH A 135 535 470 HOH HOH . E 5 HOH A 136 536 615 HOH HOH . E 5 HOH A 137 537 466 HOH HOH . E 5 HOH A 138 538 598 HOH HOH . E 5 HOH A 139 539 447 HOH HOH . E 5 HOH A 140 540 501 HOH HOH . E 5 HOH A 141 541 467 HOH HOH . E 5 HOH A 142 542 642 HOH HOH . E 5 HOH A 143 543 418 HOH HOH . E 5 HOH A 144 544 37 HOH HOH . E 5 HOH A 145 545 43 HOH HOH . E 5 HOH A 146 546 634 HOH HOH . E 5 HOH A 147 547 623 HOH HOH . E 5 HOH A 148 548 516 HOH HOH . E 5 HOH A 149 549 505 HOH HOH . E 5 HOH A 150 550 536 HOH HOH . E 5 HOH A 151 551 534 HOH HOH . E 5 HOH A 152 552 453 HOH HOH . E 5 HOH A 153 553 651 HOH HOH . E 5 HOH A 154 554 490 HOH HOH . E 5 HOH A 155 555 618 HOH HOH . E 5 HOH A 156 556 55 HOH HOH . E 5 HOH A 157 557 461 HOH HOH . E 5 HOH A 158 558 582 HOH HOH . E 5 HOH A 159 559 535 HOH HOH . E 5 HOH A 160 560 427 HOH HOH . E 5 HOH A 161 561 417 HOH HOH . E 5 HOH A 162 562 599 HOH HOH . E 5 HOH A 163 563 605 HOH HOH . E 5 HOH A 164 564 649 HOH HOH . E 5 HOH A 165 565 607 HOH HOH . E 5 HOH A 166 566 559 HOH HOH . E 5 HOH A 167 567 23 HOH HOH . E 5 HOH A 168 568 521 HOH HOH . E 5 HOH A 169 569 570 HOH HOH . E 5 HOH A 170 570 621 HOH HOH . E 5 HOH A 171 571 603 HOH HOH . E 5 HOH A 172 572 592 HOH HOH . E 5 HOH A 173 573 423 HOH HOH . E 5 HOH A 174 574 550 HOH HOH . E 5 HOH A 175 575 431 HOH HOH . E 5 HOH A 176 576 537 HOH HOH . E 5 HOH A 177 577 22 HOH HOH . E 5 HOH A 178 578 425 HOH HOH . E 5 HOH A 179 579 503 HOH HOH . E 5 HOH A 180 580 644 HOH HOH . E 5 HOH A 181 581 633 HOH HOH . E 5 HOH A 182 582 527 HOH HOH . E 5 HOH A 183 583 519 HOH HOH . E 5 HOH A 184 584 480 HOH HOH . E 5 HOH A 185 585 459 HOH HOH . E 5 HOH A 186 586 502 HOH HOH . E 5 HOH A 187 587 412 HOH HOH . E 5 HOH A 188 588 44 HOH HOH . E 5 HOH A 189 589 53 HOH HOH . E 5 HOH A 190 590 421 HOH HOH . E 5 HOH A 191 591 627 HOH HOH . E 5 HOH A 192 592 5 HOH HOH . E 5 HOH A 193 593 541 HOH HOH . E 5 HOH A 194 594 522 HOH HOH . E 5 HOH A 195 595 512 HOH HOH . E 5 HOH A 196 596 515 HOH HOH . E 5 HOH A 197 597 51 HOH HOH . E 5 HOH A 198 598 587 HOH HOH . E 5 HOH A 199 599 36 HOH HOH . E 5 HOH A 200 600 558 HOH HOH . E 5 HOH A 201 601 422 HOH HOH . E 5 HOH A 202 602 12 HOH HOH . E 5 HOH A 203 603 622 HOH HOH . E 5 HOH A 204 604 564 HOH HOH . E 5 HOH A 205 605 456 HOH HOH . E 5 HOH A 206 606 446 HOH HOH . E 5 HOH A 207 607 406 HOH HOH . E 5 HOH A 208 608 413 HOH HOH . E 5 HOH A 209 609 448 HOH HOH . E 5 HOH A 210 610 617 HOH HOH . E 5 HOH A 211 611 434 HOH HOH . E 5 HOH A 212 612 40 HOH HOH . E 5 HOH A 213 613 475 HOH HOH . E 5 HOH A 214 614 35 HOH HOH . E 5 HOH A 215 615 625 HOH HOH . E 5 HOH A 216 616 513 HOH HOH . E 5 HOH A 217 617 581 HOH HOH . E 5 HOH A 218 618 551 HOH HOH . E 5 HOH A 219 619 650 HOH HOH . E 5 HOH A 220 620 455 HOH HOH . E 5 HOH A 221 621 545 HOH HOH . E 5 HOH A 222 622 606 HOH HOH . E 5 HOH A 223 623 520 HOH HOH . E 5 HOH A 224 624 573 HOH HOH . E 5 HOH A 225 625 641 HOH HOH . E 5 HOH A 226 626 508 HOH HOH . E 5 HOH A 227 627 528 HOH HOH . E 5 HOH A 228 628 652 HOH HOH . E 5 HOH A 229 629 38 HOH HOH . E 5 HOH A 230 630 529 HOH HOH . E 5 HOH A 231 631 14 HOH HOH . E 5 HOH A 232 632 624 HOH HOH . E 5 HOH A 233 633 602 HOH HOH . E 5 HOH A 234 634 568 HOH HOH . E 5 HOH A 235 635 531 HOH HOH . E 5 HOH A 236 636 630 HOH HOH . E 5 HOH A 237 637 594 HOH HOH . E 5 HOH A 238 638 608 HOH HOH . E 5 HOH A 239 639 483 HOH HOH . E 5 HOH A 240 640 471 HOH HOH . E 5 HOH A 241 641 543 HOH HOH . E 5 HOH A 242 642 565 HOH HOH . E 5 HOH A 243 643 631 HOH HOH . E 5 HOH A 244 644 604 HOH HOH . E 5 HOH A 245 645 30 HOH HOH . E 5 HOH A 246 646 658 HOH HOH . E 5 HOH A 247 647 542 HOH HOH . E 5 HOH A 248 648 656 HOH HOH . E 5 HOH A 249 649 517 HOH HOH . E 5 HOH A 250 650 613 HOH HOH . E 5 HOH A 251 651 17 HOH HOH . E 5 HOH A 252 652 24 HOH HOH . E 5 HOH A 253 653 525 HOH HOH . E 5 HOH A 254 654 657 HOH HOH . E 5 HOH A 255 655 635 HOH HOH . E 5 HOH A 256 656 56 HOH HOH . E 5 HOH A 257 657 478 HOH HOH . E 5 HOH A 258 658 540 HOH HOH . E 5 HOH A 259 659 6 HOH HOH . E 5 HOH A 260 660 628 HOH HOH . E 5 HOH A 261 661 575 HOH HOH . E 5 HOH A 262 662 491 HOH HOH . E 5 HOH A 263 663 488 HOH HOH . E 5 HOH A 264 664 436 HOH HOH . E 5 HOH A 265 665 430 HOH HOH . E 5 HOH A 266 666 444 HOH HOH . E 5 HOH A 267 667 532 HOH HOH . E 5 HOH A 268 668 45 HOH HOH . E 5 HOH A 269 669 50 HOH HOH . E 5 HOH A 270 670 42 HOH HOH . E 5 HOH A 271 671 440 HOH HOH . E 5 HOH A 272 672 572 HOH HOH . E 5 HOH A 273 673 533 HOH HOH . E 5 HOH A 274 674 29 HOH HOH . E 5 HOH A 275 675 574 HOH HOH . E 5 HOH A 276 676 47 HOH HOH . E 5 HOH A 277 677 482 HOH HOH . E 5 HOH A 278 678 514 HOH HOH . E 5 HOH A 279 679 450 HOH HOH . E 5 HOH A 280 680 13 HOH HOH . E 5 HOH A 281 681 632 HOH HOH . E 5 HOH A 282 682 639 HOH HOH . E 5 HOH A 283 683 8 HOH HOH . E 5 HOH A 284 684 560 HOH HOH . E 5 HOH A 285 685 612 HOH HOH . E 5 HOH A 286 686 33 HOH HOH . E 5 HOH A 287 687 567 HOH HOH . E 5 HOH A 288 688 32 HOH HOH . E 5 HOH A 289 689 645 HOH HOH . E 5 HOH A 290 690 46 HOH HOH . E 5 HOH A 291 691 629 HOH HOH . E 5 HOH A 292 692 497 HOH HOH . E 5 HOH A 293 693 569 HOH HOH . E 5 HOH A 294 694 553 HOH HOH . E 5 HOH A 295 695 609 HOH HOH . E 5 HOH A 296 696 577 HOH HOH . E 5 HOH A 297 697 643 HOH HOH . E 5 HOH A 298 698 562 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.582 _atom_site.Cartn_y 0.038 _atom_site.Cartn_z 15.282 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #