data_5NYP
#
_model_server_result.job_id            CoJGPbKfM2ori7Axpw2YqA 
_model_server_result.datetime_utc      '2024-10-20 08:23:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nyp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5NYP 
#
_exptl.entry_id    5NYP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NYP 
_cell.length_a            176.217 
_cell.length_b            176.217 
_cell.length_c            39.551 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NYP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 16_547 y+1/3,x-1/3,-z+8/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 88.1085 -50.869466 105.469333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NA NA . A NA 301 1_555 E O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc2 B NA NA . A NA 301 1_555 E O HOH . A HOH 443 5_678 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc3 B NA NA . A NA 301 1_555 E O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc4 B NA NA . A NA 301 1_555 E O HOH . A HOH 451 5_678 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 247 n n 
P O2 PO4 sing 248 n n 
P O3 PO4 sing 249 n n 
P O4 PO4 sing 250 n n 
#
_atom_sites.entry_id                     5NYP 
_atom_sites.fract_transf_matrix[1][1]    0.005675 
_atom_sites.fract_transf_matrix[1][2]    0.003276 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006553 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025284 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 1 NA NA . 
C 3 PO4 A 1 302 2 PO4 PO4 . 
D 3 PO4 A 1 303 3 PO4 PO4 . 
E 4 HOH A 1 401 9 HOH HOH . 
E 4 HOH A 2 402 4 HOH HOH . 
E 4 HOH A 3 403 44 HOH HOH . 
E 4 HOH A 4 404 27 HOH HOH . 
E 4 HOH A 5 405 40 HOH HOH . 
E 4 HOH A 6 406 20 HOH HOH . 
E 4 HOH A 7 407 7 HOH HOH . 
E 4 HOH A 8 408 21 HOH HOH . 
E 4 HOH A 9 409 28 HOH HOH . 
E 4 HOH A 10 410 15 HOH HOH . 
E 4 HOH A 11 411 17 HOH HOH . 
E 4 HOH A 12 412 16 HOH HOH . 
E 4 HOH A 13 413 45 HOH HOH . 
E 4 HOH A 14 414 37 HOH HOH . 
E 4 HOH A 15 415 54 HOH HOH . 
E 4 HOH A 16 416 14 HOH HOH . 
E 4 HOH A 17 417 38 HOH HOH . 
E 4 HOH A 18 418 26 HOH HOH . 
E 4 HOH A 19 419 32 HOH HOH . 
E 4 HOH A 20 420 49 HOH HOH . 
E 4 HOH A 21 421 29 HOH HOH . 
E 4 HOH A 22 422 34 HOH HOH . 
E 4 HOH A 23 423 33 HOH HOH . 
E 4 HOH A 24 424 48 HOH HOH . 
E 4 HOH A 25 425 12 HOH HOH . 
E 4 HOH A 26 426 11 HOH HOH . 
E 4 HOH A 27 427 30 HOH HOH . 
E 4 HOH A 28 428 5 HOH HOH . 
E 4 HOH A 29 429 19 HOH HOH . 
E 4 HOH A 30 430 36 HOH HOH . 
E 4 HOH A 31 431 39 HOH HOH . 
E 4 HOH A 32 432 18 HOH HOH . 
E 4 HOH A 33 433 23 HOH HOH . 
E 4 HOH A 34 434 35 HOH HOH . 
E 4 HOH A 35 435 42 HOH HOH . 
E 4 HOH A 36 436 31 HOH HOH . 
E 4 HOH A 37 437 22 HOH HOH . 
E 4 HOH A 38 438 56 HOH HOH . 
E 4 HOH A 39 439 53 HOH HOH . 
E 4 HOH A 40 440 51 HOH HOH . 
E 4 HOH A 41 441 47 HOH HOH . 
E 4 HOH A 42 442 52 HOH HOH . 
E 4 HOH A 43 443 57 HOH HOH . 
E 4 HOH A 44 444 6 HOH HOH . 
E 4 HOH A 45 445 24 HOH HOH . 
E 4 HOH A 46 446 8 HOH HOH . 
E 4 HOH A 47 447 13 HOH HOH . 
E 4 HOH A 48 448 41 HOH HOH . 
E 4 HOH A 49 449 43 HOH HOH . 
E 4 HOH A 50 450 46 HOH HOH . 
E 4 HOH A 51 451 58 HOH HOH . 
E 4 HOH A 52 452 55 HOH HOH . 
E 4 HOH A 53 453 50 HOH HOH . 
E 4 HOH A 54 454 59 HOH HOH . 
E 4 HOH A 55 455 10 HOH HOH . 
E 4 HOH A 56 456 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . C 3 123.163 154.249 45.789 1 67.97 ? P PO4 302 A 1 
HETATM 2 O O1 PO4 . . . C 3 122.111 153.952 44.745 1 64.71 ? O1 PO4 302 A 1 
HETATM 3 O O2 PO4 . . . C 3 124.39 153.41 45.511 1 60.78 ? O2 PO4 302 A 1 
HETATM 4 O O3 PO4 . . . C 3 122.61 153.928 47.163 1 50.19 ? O3 PO4 302 A 1 
HETATM 5 O O4 PO4 . . . C 3 123.537 155.712 45.726 1 68.41 ? O4 PO4 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#