data_5NZ0 # _model_server_result.job_id 83Ru3T87HfpWbfR2EeVC2g _model_server_result.datetime_utc '2024-11-08 06:55:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5NZ0 # _exptl.entry_id 5NZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.346 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[(5S)-3-(3-fluoro-4-morpholin-4-ylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NZ0 _cell.length_a 121.382 _cell.length_b 121.382 _cell.length_c 33.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -16.89 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H20 F N3 O4' _chem_comp.formula_weight 337.346 _chem_comp.id ZLD _chem_comp.mon_nstd_flag . _chem_comp.name N-{[(5S)-3-(3-fluoro-4-morpholin-4-ylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Linezolid # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C5 ZLD doub 372 n y C2 C1 ZLD sing 373 n y C2 N4 ZLD sing 374 n n C5 C16 ZLD sing 375 n y C9 C8 ZLD sing 376 n n C9 N11 ZLD sing 377 n n C1 C3 ZLD doub 378 n y C3 C17 ZLD sing 379 n y N4 C6 ZLD sing 380 n n N4 C7 ZLD sing 381 n n C6 C8 ZLD sing 382 n n C7 O10 ZLD sing 383 n n C7 O15 ZLD doub 384 n n C8 O10 ZLD sing 385 n n N11 C12 ZLD sing 386 n n C12 C13 ZLD sing 387 n n C12 O14 ZLD doub 388 n n C16 C17 ZLD doub 389 n y C16 F18 ZLD sing 390 n n C17 N19 ZLD sing 391 n n N19 C20 ZLD sing 392 n n N19 C24 ZLD sing 393 n n C20 C21 ZLD sing 394 n n C21 O22 ZLD sing 395 n n O22 C23 ZLD sing 396 n n C23 C24 ZLD sing 397 n n C5 H5 ZLD sing 398 n n C9 H9 ZLD sing 399 n n C9 H9A ZLD sing 400 n n C1 H1 ZLD sing 401 n n C3 H3 ZLD sing 402 n n C6 H6 ZLD sing 403 n n C6 H6A ZLD sing 404 n n C8 H8 ZLD sing 405 n n N11 HN11 ZLD sing 406 n n C13 H13 ZLD sing 407 n n C13 H13A ZLD sing 408 n n C13 H13B ZLD sing 409 n n C20 H20 ZLD sing 410 n n C20 H20A ZLD sing 411 n n C21 H21 ZLD sing 412 n n C21 H21A ZLD sing 413 n n C23 H23 ZLD sing 414 n n C23 H23A ZLD sing 415 n n C24 H24 ZLD sing 416 n n C24 H24A ZLD sing 417 n n # _atom_sites.entry_id 5NZ0 _atom_sites.fract_transf_matrix[1][1] 0.008238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZLD A 1 301 1 ZLD LIG . C 3 EDO A 1 302 1 EDO EDO . D 4 HOH A 1 401 6 HOH HOH . D 4 HOH A 2 402 23 HOH HOH . D 4 HOH A 3 403 39 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 124 HOH HOH . D 4 HOH A 6 406 30 HOH HOH . D 4 HOH A 7 407 50 HOH HOH . D 4 HOH A 8 408 5 HOH HOH . D 4 HOH A 9 409 7 HOH HOH . D 4 HOH A 10 410 17 HOH HOH . D 4 HOH A 11 411 68 HOH HOH . D 4 HOH A 12 412 81 HOH HOH . D 4 HOH A 13 413 58 HOH HOH . D 4 HOH A 14 414 109 HOH HOH . D 4 HOH A 15 415 41 HOH HOH . D 4 HOH A 16 416 27 HOH HOH . D 4 HOH A 17 417 19 HOH HOH . D 4 HOH A 18 418 51 HOH HOH . D 4 HOH A 19 419 53 HOH HOH . D 4 HOH A 20 420 38 HOH HOH . D 4 HOH A 21 421 75 HOH HOH . D 4 HOH A 22 422 2 HOH HOH . D 4 HOH A 23 423 79 HOH HOH . D 4 HOH A 24 424 18 HOH HOH . D 4 HOH A 25 425 118 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 15 HOH HOH . D 4 HOH A 28 428 16 HOH HOH . D 4 HOH A 29 429 1 HOH HOH . D 4 HOH A 30 430 25 HOH HOH . D 4 HOH A 31 431 9 HOH HOH . D 4 HOH A 32 432 111 HOH HOH . D 4 HOH A 33 433 72 HOH HOH . D 4 HOH A 34 434 11 HOH HOH . D 4 HOH A 35 435 32 HOH HOH . D 4 HOH A 36 436 24 HOH HOH . D 4 HOH A 37 437 29 HOH HOH . D 4 HOH A 38 438 3 HOH HOH . D 4 HOH A 39 439 66 HOH HOH . D 4 HOH A 40 440 83 HOH HOH . D 4 HOH A 41 441 74 HOH HOH . D 4 HOH A 42 442 122 HOH HOH . D 4 HOH A 43 443 34 HOH HOH . D 4 HOH A 44 444 43 HOH HOH . D 4 HOH A 45 445 85 HOH HOH . D 4 HOH A 46 446 70 HOH HOH . D 4 HOH A 47 447 13 HOH HOH . D 4 HOH A 48 448 12 HOH HOH . D 4 HOH A 49 449 14 HOH HOH . D 4 HOH A 50 450 121 HOH HOH . D 4 HOH A 51 451 73 HOH HOH . D 4 HOH A 52 452 8 HOH HOH . D 4 HOH A 53 453 80 HOH HOH . D 4 HOH A 54 454 21 HOH HOH . D 4 HOH A 55 455 35 HOH HOH . D 4 HOH A 56 456 10 HOH HOH . D 4 HOH A 57 457 71 HOH HOH . D 4 HOH A 58 458 47 HOH HOH . D 4 HOH A 59 459 52 HOH HOH . D 4 HOH A 60 460 33 HOH HOH . D 4 HOH A 61 461 36 HOH HOH . D 4 HOH A 62 462 61 HOH HOH . D 4 HOH A 63 463 100 HOH HOH . D 4 HOH A 64 464 65 HOH HOH . D 4 HOH A 65 465 78 HOH HOH . D 4 HOH A 66 466 28 HOH HOH . D 4 HOH A 67 467 48 HOH HOH . D 4 HOH A 68 468 64 HOH HOH . D 4 HOH A 69 469 56 HOH HOH . D 4 HOH A 70 470 54 HOH HOH . D 4 HOH A 71 471 99 HOH HOH . D 4 HOH A 72 472 108 HOH HOH . D 4 HOH A 73 473 77 HOH HOH . D 4 HOH A 74 474 31 HOH HOH . D 4 HOH A 75 475 46 HOH HOH . D 4 HOH A 76 476 37 HOH HOH . D 4 HOH A 77 477 40 HOH HOH . D 4 HOH A 78 478 112 HOH HOH . D 4 HOH A 79 479 67 HOH HOH . D 4 HOH A 80 480 113 HOH HOH . D 4 HOH A 81 481 103 HOH HOH . D 4 HOH A 82 482 104 HOH HOH . D 4 HOH A 83 483 119 HOH HOH . D 4 HOH A 84 484 116 HOH HOH . D 4 HOH A 85 485 110 HOH HOH . D 4 HOH A 86 486 90 HOH HOH . D 4 HOH A 87 487 107 HOH HOH . D 4 HOH A 88 488 42 HOH HOH . D 4 HOH A 89 489 105 HOH HOH . D 4 HOH A 90 490 91 HOH HOH . D 4 HOH A 91 491 88 HOH HOH . D 4 HOH A 92 492 106 HOH HOH . D 4 HOH A 93 493 87 HOH HOH . D 4 HOH A 94 494 89 HOH HOH . D 4 HOH A 95 495 97 HOH HOH . D 4 HOH A 96 496 82 HOH HOH . D 4 HOH A 97 497 117 HOH HOH . D 4 HOH A 98 498 114 HOH HOH . D 4 HOH A 99 499 22 HOH HOH . D 4 HOH A 100 500 94 HOH HOH . D 4 HOH A 101 501 115 HOH HOH . D 4 HOH A 102 502 49 HOH HOH . D 4 HOH A 103 503 55 HOH HOH . D 4 HOH A 104 504 123 HOH HOH . D 4 HOH A 105 505 101 HOH HOH . D 4 HOH A 106 506 84 HOH HOH . D 4 HOH A 107 507 92 HOH HOH . D 4 HOH A 108 508 96 HOH HOH . D 4 HOH A 109 509 120 HOH HOH . D 4 HOH A 110 510 45 HOH HOH . D 4 HOH A 111 511 69 HOH HOH . D 4 HOH A 112 512 44 HOH HOH . D 4 HOH A 113 513 60 HOH HOH . D 4 HOH A 114 514 59 HOH HOH . D 4 HOH A 115 515 63 HOH HOH . D 4 HOH A 116 516 102 HOH HOH . D 4 HOH A 117 517 93 HOH HOH . D 4 HOH A 118 518 20 HOH HOH . D 4 HOH A 119 519 98 HOH HOH . D 4 HOH A 120 520 86 HOH HOH . D 4 HOH A 121 521 62 HOH HOH . D 4 HOH A 122 522 57 HOH HOH . D 4 HOH A 123 523 95 HOH HOH . D 4 HOH A 124 524 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 ZLD . . . B 2 -27.55 9.802 -4.714 1 47.3 ? C2 ZLD 301 A 1 HETATM 2 C C5 ZLD . . . B 2 -27.34 10.261 -5.959 1 43.43 ? C5 ZLD 301 A 1 HETATM 3 C C9 ZLD . . . B 2 -26.884 4.955 -5.419 1 73.42 ? C9 ZLD 301 A 1 HETATM 4 C C1 ZLD . . . B 2 -28.064 10.71 -3.843 1 46.17 ? C1 ZLD 301 A 1 HETATM 5 C C3 ZLD . . . B 2 -28.355 12.009 -4.231 1 42.34 ? C3 ZLD 301 A 1 HETATM 6 N N4 ZLD . . . B 2 -27.227 8.422 -4.435 1 57.25 ? N4 ZLD 301 A 1 HETATM 7 C C6 ZLD . . . B 2 -27.037 7.473 -5.458 1 60.76 ? C6 ZLD 301 A 1 HETATM 8 C C7 ZLD . . . B 2 -27.038 7.606 -3.239 1 65.43 ? C7 ZLD 301 A 1 HETATM 9 C C8 ZLD . . . B 2 -26.57 6.282 -4.79 1 67.14 ? C8 ZLD 301 A 1 HETATM 10 O O10 ZLD . . . B 2 -27.291 6.281 -3.638 1 67.7 ? O10 ZLD 301 A 1 HETATM 11 N N11 ZLD . . . B 2 -26.163 4.131 -4.495 1 77.94 ? N11 ZLD 301 A 1 HETATM 12 C C12 ZLD . . . B 2 -26.749 3.056 -3.749 1 78.87 ? C12 ZLD 301 A 1 HETATM 13 C C13 ZLD . . . B 2 -25.877 2.285 -2.801 1 78.52 ? C13 ZLD 301 A 1 HETATM 14 O O14 ZLD . . . B 2 -27.865 2.775 -3.875 1 80.8 ? O14 ZLD 301 A 1 HETATM 15 O O15 ZLD . . . B 2 -26.704 7.853 -2.172 1 70.7 ? O15 ZLD 301 A 1 HETATM 16 C C16 ZLD . . . B 2 -27.618 11.542 -6.333 1 45.1 ? C16 ZLD 301 A 1 HETATM 17 C C17 ZLD . . . B 2 -28.128 12.459 -5.496 1 43 ? C17 ZLD 301 A 1 HETATM 18 F F18 ZLD . . . B 2 -27.38 11.899 -7.575 1 56.36 ? F18 ZLD 301 A 1 HETATM 19 N N19 ZLD . . . B 2 -28.417 13.822 -5.903 1 42.15 ? N19 ZLD 301 A 1 HETATM 20 C C20 ZLD . . . B 2 -29.235 14.697 -5.069 1 39.94 ? C20 ZLD 301 A 1 HETATM 21 C C21 ZLD . . . B 2 -29.758 16.015 -5.639 1 43.23 ? C21 ZLD 301 A 1 HETATM 22 O O22 ZLD . . . B 2 -29.761 16.189 -7.003 1 43.68 ? O22 ZLD 301 A 1 HETATM 23 C C23 ZLD . . . B 2 -29.123 15.273 -7.824 1 42.54 ? C23 ZLD 301 A 1 HETATM 24 C C24 ZLD . . . B 2 -28.029 14.426 -7.183 1 43.24 ? C24 ZLD 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #