data_5NZ0 # _model_server_result.job_id 91T7VsJbLdnvPPBUabO44g _model_server_result.datetime_utc '2025-03-06 17:59:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5NZ0 # _exptl.entry_id 5NZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NZ0 _cell.length_a 121.382 _cell.length_b 121.382 _cell.length_c 33.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -16.89 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5NZ0 _atom_sites.fract_transf_matrix[1][1] 0.008238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZLD A 1 301 1 ZLD LIG . C 3 EDO A 1 302 1 EDO EDO . D 4 HOH A 1 401 6 HOH HOH . D 4 HOH A 2 402 23 HOH HOH . D 4 HOH A 3 403 39 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 124 HOH HOH . D 4 HOH A 6 406 30 HOH HOH . D 4 HOH A 7 407 50 HOH HOH . D 4 HOH A 8 408 5 HOH HOH . D 4 HOH A 9 409 7 HOH HOH . D 4 HOH A 10 410 17 HOH HOH . D 4 HOH A 11 411 68 HOH HOH . D 4 HOH A 12 412 81 HOH HOH . D 4 HOH A 13 413 58 HOH HOH . D 4 HOH A 14 414 109 HOH HOH . D 4 HOH A 15 415 41 HOH HOH . D 4 HOH A 16 416 27 HOH HOH . D 4 HOH A 17 417 19 HOH HOH . D 4 HOH A 18 418 51 HOH HOH . D 4 HOH A 19 419 53 HOH HOH . D 4 HOH A 20 420 38 HOH HOH . D 4 HOH A 21 421 75 HOH HOH . D 4 HOH A 22 422 2 HOH HOH . D 4 HOH A 23 423 79 HOH HOH . D 4 HOH A 24 424 18 HOH HOH . D 4 HOH A 25 425 118 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 15 HOH HOH . D 4 HOH A 28 428 16 HOH HOH . D 4 HOH A 29 429 1 HOH HOH . D 4 HOH A 30 430 25 HOH HOH . D 4 HOH A 31 431 9 HOH HOH . D 4 HOH A 32 432 111 HOH HOH . D 4 HOH A 33 433 72 HOH HOH . D 4 HOH A 34 434 11 HOH HOH . D 4 HOH A 35 435 32 HOH HOH . D 4 HOH A 36 436 24 HOH HOH . D 4 HOH A 37 437 29 HOH HOH . D 4 HOH A 38 438 3 HOH HOH . D 4 HOH A 39 439 66 HOH HOH . D 4 HOH A 40 440 83 HOH HOH . D 4 HOH A 41 441 74 HOH HOH . D 4 HOH A 42 442 122 HOH HOH . D 4 HOH A 43 443 34 HOH HOH . D 4 HOH A 44 444 43 HOH HOH . D 4 HOH A 45 445 85 HOH HOH . D 4 HOH A 46 446 70 HOH HOH . D 4 HOH A 47 447 13 HOH HOH . D 4 HOH A 48 448 12 HOH HOH . D 4 HOH A 49 449 14 HOH HOH . D 4 HOH A 50 450 121 HOH HOH . D 4 HOH A 51 451 73 HOH HOH . D 4 HOH A 52 452 8 HOH HOH . D 4 HOH A 53 453 80 HOH HOH . D 4 HOH A 54 454 21 HOH HOH . D 4 HOH A 55 455 35 HOH HOH . D 4 HOH A 56 456 10 HOH HOH . D 4 HOH A 57 457 71 HOH HOH . D 4 HOH A 58 458 47 HOH HOH . D 4 HOH A 59 459 52 HOH HOH . D 4 HOH A 60 460 33 HOH HOH . D 4 HOH A 61 461 36 HOH HOH . D 4 HOH A 62 462 61 HOH HOH . D 4 HOH A 63 463 100 HOH HOH . D 4 HOH A 64 464 65 HOH HOH . D 4 HOH A 65 465 78 HOH HOH . D 4 HOH A 66 466 28 HOH HOH . D 4 HOH A 67 467 48 HOH HOH . D 4 HOH A 68 468 64 HOH HOH . D 4 HOH A 69 469 56 HOH HOH . D 4 HOH A 70 470 54 HOH HOH . D 4 HOH A 71 471 99 HOH HOH . D 4 HOH A 72 472 108 HOH HOH . D 4 HOH A 73 473 77 HOH HOH . D 4 HOH A 74 474 31 HOH HOH . D 4 HOH A 75 475 46 HOH HOH . D 4 HOH A 76 476 37 HOH HOH . D 4 HOH A 77 477 40 HOH HOH . D 4 HOH A 78 478 112 HOH HOH . D 4 HOH A 79 479 67 HOH HOH . D 4 HOH A 80 480 113 HOH HOH . D 4 HOH A 81 481 103 HOH HOH . D 4 HOH A 82 482 104 HOH HOH . D 4 HOH A 83 483 119 HOH HOH . D 4 HOH A 84 484 116 HOH HOH . D 4 HOH A 85 485 110 HOH HOH . D 4 HOH A 86 486 90 HOH HOH . D 4 HOH A 87 487 107 HOH HOH . D 4 HOH A 88 488 42 HOH HOH . D 4 HOH A 89 489 105 HOH HOH . D 4 HOH A 90 490 91 HOH HOH . D 4 HOH A 91 491 88 HOH HOH . D 4 HOH A 92 492 106 HOH HOH . D 4 HOH A 93 493 87 HOH HOH . D 4 HOH A 94 494 89 HOH HOH . D 4 HOH A 95 495 97 HOH HOH . D 4 HOH A 96 496 82 HOH HOH . D 4 HOH A 97 497 117 HOH HOH . D 4 HOH A 98 498 114 HOH HOH . D 4 HOH A 99 499 22 HOH HOH . D 4 HOH A 100 500 94 HOH HOH . D 4 HOH A 101 501 115 HOH HOH . D 4 HOH A 102 502 49 HOH HOH . D 4 HOH A 103 503 55 HOH HOH . D 4 HOH A 104 504 123 HOH HOH . D 4 HOH A 105 505 101 HOH HOH . D 4 HOH A 106 506 84 HOH HOH . D 4 HOH A 107 507 92 HOH HOH . D 4 HOH A 108 508 96 HOH HOH . D 4 HOH A 109 509 120 HOH HOH . D 4 HOH A 110 510 45 HOH HOH . D 4 HOH A 111 511 69 HOH HOH . D 4 HOH A 112 512 44 HOH HOH . D 4 HOH A 113 513 60 HOH HOH . D 4 HOH A 114 514 59 HOH HOH . D 4 HOH A 115 515 63 HOH HOH . D 4 HOH A 116 516 102 HOH HOH . D 4 HOH A 117 517 93 HOH HOH . D 4 HOH A 118 518 20 HOH HOH . D 4 HOH A 119 519 98 HOH HOH . D 4 HOH A 120 520 86 HOH HOH . D 4 HOH A 121 521 62 HOH HOH . D 4 HOH A 122 522 57 HOH HOH . D 4 HOH A 123 523 95 HOH HOH . D 4 HOH A 124 524 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -53.081 36.205 -11.625 1 71.82 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . C 3 -52.403 35.878 -10.406 1 71.01 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . C 3 -54.501 36.671 -11.325 1 71.82 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . C 3 -55.21 36.84 -12.557 1 71.82 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #