data_5NZ6 # _model_server_result.job_id FNJcNnAiS0wYxZHnQVwl7Q _model_server_result.datetime_utc '2025-02-26 14:50:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5NZ6 # _exptl.entry_id 5NZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.07 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NZ6 _cell.length_a 83.56 _cell.length_b 83.56 _cell.length_c 98.814 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' C 1 A C 1 1_555 A P CBV 2 A CBV 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale2 A O3' G 38 A G 38 1_555 A P CBV 39 A CBV 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale3 A O3' CBV 39 A CBV 39 1_555 A P G 40 A G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.576 ? hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 1 1_555 A N1 G 24 A G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 1 1_555 A O6 G 24 A G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 1 1_555 A N2 G 24 A G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 CBV 2 A CBV 2 1_555 A N1 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 CBV 2 A CBV 2 1_555 A O6 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 CBV 2 A CBV 2 1_555 A N2 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 G 3 A G 3 1_555 A N3 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 G 3 A G 3 1_555 A O2 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 G 3 A G 3 1_555 A N4 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 A G 4 1_555 A N3 C 21 A C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 A G 4 1_555 A O2 C 21 A C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 A G 4 1_555 A N4 C 21 A C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_5_PAIR hydrog13 A N1 A 5 A A 5 1_555 A N6 A 19 A A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_5_PAIR hydrog14 A N6 A 5 A A 5 1_555 A N7 A 19 A A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-U MISPAIR' hydrog15 A N4 C 6 A C 6 1_555 A O4 U 18 A U 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog16 A N3 C 6 A C 6 1_555 A N2 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog17 A O2 C 6 A C 6 1_555 A N1 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_9_PAIR hydrog18 A N1 G 7 A G 7 1_555 A N7 A 35 A A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_9_PAIR hydrog19 A O6 G 7 A G 7 1_555 A N6 A 35 A A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog20 A N1 A 8 A A 8 1_555 A N4 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog21 A O6 G 9 A G 9 1_555 A N4 C 16 A C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N1 G 9 A G 9 1_555 A O6 G 37 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 A N2 G 9 A G 9 1_555 A N7 G 37 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog24 A O6 G 10 A G 10 1_555 A N4 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog25 A N1 G 10 A G 10 1_555 A O6 G 38 A G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 A N2 G 10 A G 10 1_555 A N7 G 38 A G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog27 A N3 U 11 A U 11 1_555 A O6 G 14 A G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-CBV MISPAIR' hydrog28 A O4 U 11 A U 11 1_555 A N4 CBV 39 A CBV 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog29 A N1 G 12 A G 12 1_555 A O2 C 41 A C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog30 A N2 G 12 A G 12 1_555 A N3 C 41 A C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 C 13 A C 13 1_555 A N1 G 40 A G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N4 C 13 A C 13 1_555 A O6 G 40 A G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A O2 C 13 A C 13 1_555 A N2 G 40 A G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N1 G 14 A G 14 1_555 A N3 CBV 39 A CBV 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N2 G 14 A G 14 1_555 A O2 CBV 39 A CBV 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A O6 G 14 A G 14 1_555 A N4 CBV 39 A CBV 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N3 C 15 A C 15 1_555 A N1 G 38 A G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N4 C 15 A C 15 1_555 A O6 G 38 A G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A O2 C 15 A C 15 1_555 A N2 G 38 A G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N3 C 16 A C 16 1_555 A N1 G 37 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N4 C 16 A C 16 1_555 A O6 G 37 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O2 C 16 A C 16 1_555 A N2 G 37 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N1 G 17 A G 17 1_555 A N3 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N2 G 17 A G 17 1_555 A O2 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A O6 G 17 A G 17 1_555 A N4 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N3 U 18 A U 18 1_555 A N1 A 35 A A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A O4 U 18 A U 18 1_555 A N6 A 35 A A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-G MISPAIR' hydrog48 A N6 A 19 A A 19 1_555 A N3 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A N3 C 20 A C 20 1_555 A N1 G 29 A G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 A N4 C 20 A C 20 1_555 A O6 G 29 A G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 A O2 C 20 A C 20 1_555 A N2 G 29 A G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog52 A N2 G 23 A G 23 1_555 A N3 A 27 A A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C H5 N3' _chem_comp.formula_weight 59.07 _chem_comp.id GAI _chem_comp.mon_nstd_flag . _chem_comp.name GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N1 GAI doub 152 n n C N2 GAI sing 153 n n C N3 GAI sing 154 n n N1 HN1 GAI sing 155 n n N2 HN21 GAI sing 156 n n N2 HN22 GAI sing 157 n n N3 HN31 GAI sing 158 n n N3 HN32 GAI sing 159 n n # _atom_sites.entry_id 5NZ6 _atom_sites.fract_transf_matrix[1][1] 0.011967 _atom_sites.fract_transf_matrix[1][2] 0.006909 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GAI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id GAI _pdbx_nonpoly_scheme.auth_mon_id GAI _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GAI . . . B 2 -17.277 -16.972 13.531 1 220.67 ? C GAI 101 A 1 HETATM 2 N N1 GAI . . . B 2 -17.086 -17.898 12.432 1 334.5 ? N1 GAI 101 A 1 HETATM 3 N N2 GAI . . . B 2 -18.363 -16.03 13.516 1 149.4 ? N2 GAI 101 A 1 HETATM 4 N N3 GAI . . . B 2 -16.514 -16.977 14.508 1 182.99 ? N3 GAI 101 A 1 HETATM 5 H HN1 GAI . . . B 2 -16.434 -18.459 12.45 1 401.41 ? HN1 GAI 101 A 1 HETATM 6 H HN21 GAI . . . B 2 -18.468 -15.485 14.173 1 179.28 ? HN21 GAI 101 A 1 HETATM 7 H HN22 GAI . . . B 2 -18.905 -16.01 12.849 1 179.28 ? HN22 GAI 101 A 1 HETATM 8 H HN31 GAI . . . B 2 -15.835 -17.552 14.539 1 219.59 ? HN31 GAI 101 A 1 HETATM 9 H HN32 GAI . . . B 2 -17.624 -17.885 11.761 1 401.41 ? HN32 GAI 101 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 9 #