data_5NZJ # _model_server_result.job_id ULfpYt9JsQORSywfbRQ5uw _model_server_result.datetime_utc '2024-11-17 07:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5NZJ # _exptl.entry_id 5NZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NZJ _cell.length_a 79.69 _cell.length_b 87.74 _cell.length_c 138.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 92 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 92 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 3_655 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.015 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5NZJ _atom_sites.fract_transf_matrix[1][1] 0.012549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UPG A 1 601 1 UPG UPG . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 2 EDO EDO . E 3 EDO A 1 604 3 EDO EDO . F 3 EDO A 1 605 4 EDO EDO . G 3 EDO A 1 606 5 EDO EDO . H 3 EDO A 1 607 6 EDO EDO . I 4 SO4 A 1 608 1 SO4 SO4 . J 5 HOH A 1 701 150 HOH HOH . J 5 HOH A 2 702 282 HOH HOH . J 5 HOH A 3 703 191 HOH HOH . J 5 HOH A 4 704 101 HOH HOH . J 5 HOH A 5 705 156 HOH HOH . J 5 HOH A 6 706 80 HOH HOH . J 5 HOH A 7 707 21 HOH HOH . J 5 HOH A 8 708 17 HOH HOH . J 5 HOH A 9 709 184 HOH HOH . J 5 HOH A 10 710 277 HOH HOH . J 5 HOH A 11 711 242 HOH HOH . J 5 HOH A 12 712 275 HOH HOH . J 5 HOH A 13 713 116 HOH HOH . J 5 HOH A 14 714 48 HOH HOH . J 5 HOH A 15 715 36 HOH HOH . J 5 HOH A 16 716 27 HOH HOH . J 5 HOH A 17 717 107 HOH HOH . J 5 HOH A 18 718 128 HOH HOH . J 5 HOH A 19 719 37 HOH HOH . J 5 HOH A 20 720 100 HOH HOH . J 5 HOH A 21 721 178 HOH HOH . J 5 HOH A 22 722 56 HOH HOH . J 5 HOH A 23 723 22 HOH HOH . J 5 HOH A 24 724 46 HOH HOH . J 5 HOH A 25 725 293 HOH HOH . J 5 HOH A 26 726 82 HOH HOH . J 5 HOH A 27 727 174 HOH HOH . J 5 HOH A 28 728 61 HOH HOH . J 5 HOH A 29 729 81 HOH HOH . J 5 HOH A 30 730 154 HOH HOH . J 5 HOH A 31 731 232 HOH HOH . J 5 HOH A 32 732 76 HOH HOH . J 5 HOH A 33 733 290 HOH HOH . J 5 HOH A 34 734 25 HOH HOH . J 5 HOH A 35 735 273 HOH HOH . J 5 HOH A 36 736 292 HOH HOH . J 5 HOH A 37 737 70 HOH HOH . J 5 HOH A 38 738 285 HOH HOH . J 5 HOH A 39 739 2 HOH HOH . J 5 HOH A 40 740 110 HOH HOH . J 5 HOH A 41 741 94 HOH HOH . J 5 HOH A 42 742 144 HOH HOH . J 5 HOH A 43 743 83 HOH HOH . J 5 HOH A 44 744 71 HOH HOH . J 5 HOH A 45 745 89 HOH HOH . J 5 HOH A 46 746 152 HOH HOH . J 5 HOH A 47 747 41 HOH HOH . J 5 HOH A 48 748 278 HOH HOH . J 5 HOH A 49 749 45 HOH HOH . J 5 HOH A 50 750 31 HOH HOH . J 5 HOH A 51 751 105 HOH HOH . J 5 HOH A 52 752 51 HOH HOH . J 5 HOH A 53 753 53 HOH HOH . J 5 HOH A 54 754 34 HOH HOH . J 5 HOH A 55 755 8 HOH HOH . J 5 HOH A 56 756 157 HOH HOH . J 5 HOH A 57 757 20 HOH HOH . J 5 HOH A 58 758 188 HOH HOH . J 5 HOH A 59 759 78 HOH HOH . J 5 HOH A 60 760 23 HOH HOH . J 5 HOH A 61 761 217 HOH HOH . J 5 HOH A 62 762 6 HOH HOH . J 5 HOH A 63 763 24 HOH HOH . J 5 HOH A 64 764 109 HOH HOH . J 5 HOH A 65 765 92 HOH HOH . J 5 HOH A 66 766 155 HOH HOH . J 5 HOH A 67 767 39 HOH HOH . J 5 HOH A 68 768 257 HOH HOH . J 5 HOH A 69 769 200 HOH HOH . J 5 HOH A 70 770 32 HOH HOH . J 5 HOH A 71 771 88 HOH HOH . J 5 HOH A 72 772 10 HOH HOH . J 5 HOH A 73 773 236 HOH HOH . J 5 HOH A 74 774 95 HOH HOH . J 5 HOH A 75 775 112 HOH HOH . J 5 HOH A 76 776 11 HOH HOH . J 5 HOH A 77 777 13 HOH HOH . J 5 HOH A 78 778 19 HOH HOH . J 5 HOH A 79 779 44 HOH HOH . J 5 HOH A 80 780 43 HOH HOH . J 5 HOH A 81 781 153 HOH HOH . J 5 HOH A 82 782 248 HOH HOH . J 5 HOH A 83 783 5 HOH HOH . J 5 HOH A 84 784 183 HOH HOH . J 5 HOH A 85 785 104 HOH HOH . J 5 HOH A 86 786 29 HOH HOH . J 5 HOH A 87 787 12 HOH HOH . J 5 HOH A 88 788 274 HOH HOH . J 5 HOH A 89 789 7 HOH HOH . J 5 HOH A 90 790 106 HOH HOH . J 5 HOH A 91 791 235 HOH HOH . J 5 HOH A 92 792 241 HOH HOH . J 5 HOH A 93 793 28 HOH HOH . J 5 HOH A 94 794 73 HOH HOH . J 5 HOH A 95 795 65 HOH HOH . J 5 HOH A 96 796 9 HOH HOH . J 5 HOH A 97 797 91 HOH HOH . J 5 HOH A 98 798 86 HOH HOH . J 5 HOH A 99 799 138 HOH HOH . J 5 HOH A 100 800 59 HOH HOH . J 5 HOH A 101 801 114 HOH HOH . J 5 HOH A 102 802 102 HOH HOH . J 5 HOH A 103 803 87 HOH HOH . J 5 HOH A 104 804 193 HOH HOH . J 5 HOH A 105 805 54 HOH HOH . J 5 HOH A 106 806 291 HOH HOH . J 5 HOH A 107 807 127 HOH HOH . J 5 HOH A 108 808 98 HOH HOH . J 5 HOH A 109 809 40 HOH HOH . J 5 HOH A 110 810 64 HOH HOH . J 5 HOH A 111 811 15 HOH HOH . J 5 HOH A 112 812 62 HOH HOH . J 5 HOH A 113 813 170 HOH HOH . J 5 HOH A 114 814 63 HOH HOH . J 5 HOH A 115 815 133 HOH HOH . J 5 HOH A 116 816 122 HOH HOH . J 5 HOH A 117 817 38 HOH HOH . J 5 HOH A 118 818 67 HOH HOH . J 5 HOH A 119 819 33 HOH HOH . J 5 HOH A 120 820 124 HOH HOH . J 5 HOH A 121 821 75 HOH HOH . J 5 HOH A 122 822 57 HOH HOH . J 5 HOH A 123 823 30 HOH HOH . J 5 HOH A 124 824 227 HOH HOH . J 5 HOH A 125 825 79 HOH HOH . J 5 HOH A 126 826 77 HOH HOH . J 5 HOH A 127 827 69 HOH HOH . J 5 HOH A 128 828 140 HOH HOH . J 5 HOH A 129 829 247 HOH HOH . J 5 HOH A 130 830 117 HOH HOH . J 5 HOH A 131 831 142 HOH HOH . J 5 HOH A 132 832 16 HOH HOH . J 5 HOH A 133 833 288 HOH HOH . J 5 HOH A 134 834 126 HOH HOH . J 5 HOH A 135 835 283 HOH HOH . J 5 HOH A 136 836 146 HOH HOH . J 5 HOH A 137 837 1 HOH HOH . J 5 HOH A 138 838 141 HOH HOH . J 5 HOH A 139 839 164 HOH HOH . J 5 HOH A 140 840 118 HOH HOH . J 5 HOH A 141 841 55 HOH HOH . J 5 HOH A 142 842 249 HOH HOH . J 5 HOH A 143 843 267 HOH HOH . J 5 HOH A 144 844 60 HOH HOH . J 5 HOH A 145 845 49 HOH HOH . J 5 HOH A 146 846 14 HOH HOH . J 5 HOH A 147 847 108 HOH HOH . J 5 HOH A 148 848 68 HOH HOH . J 5 HOH A 149 849 121 HOH HOH . J 5 HOH A 150 850 90 HOH HOH . J 5 HOH A 151 851 3 HOH HOH . J 5 HOH A 152 852 26 HOH HOH . J 5 HOH A 153 853 4 HOH HOH . J 5 HOH A 154 854 52 HOH HOH . J 5 HOH A 155 855 134 HOH HOH . J 5 HOH A 156 856 115 HOH HOH . J 5 HOH A 157 857 231 HOH HOH . J 5 HOH A 158 858 258 HOH HOH . J 5 HOH A 159 859 18 HOH HOH . J 5 HOH A 160 860 50 HOH HOH . J 5 HOH A 161 861 113 HOH HOH . J 5 HOH A 162 862 244 HOH HOH . J 5 HOH A 163 863 42 HOH HOH . J 5 HOH A 164 864 233 HOH HOH . J 5 HOH A 165 865 160 HOH HOH . J 5 HOH A 166 866 131 HOH HOH . J 5 HOH A 167 867 35 HOH HOH . J 5 HOH A 168 868 223 HOH HOH . J 5 HOH A 169 869 263 HOH HOH . J 5 HOH A 170 870 209 HOH HOH . J 5 HOH A 171 871 85 HOH HOH . J 5 HOH A 172 872 192 HOH HOH . J 5 HOH A 173 873 243 HOH HOH . J 5 HOH A 174 874 211 HOH HOH . J 5 HOH A 175 875 276 HOH HOH . J 5 HOH A 176 876 225 HOH HOH . J 5 HOH A 177 877 93 HOH HOH . J 5 HOH A 178 878 266 HOH HOH . J 5 HOH A 179 879 72 HOH HOH . J 5 HOH A 180 880 111 HOH HOH . J 5 HOH A 181 881 125 HOH HOH . J 5 HOH A 182 882 204 HOH HOH . J 5 HOH A 183 883 176 HOH HOH . J 5 HOH A 184 884 147 HOH HOH . J 5 HOH A 185 885 97 HOH HOH . J 5 HOH A 186 886 245 HOH HOH . J 5 HOH A 187 887 190 HOH HOH . J 5 HOH A 188 888 265 HOH HOH . J 5 HOH A 189 889 221 HOH HOH . J 5 HOH A 190 890 205 HOH HOH . J 5 HOH A 191 891 252 HOH HOH . J 5 HOH A 192 892 264 HOH HOH . J 5 HOH A 193 893 214 HOH HOH . J 5 HOH A 194 894 240 HOH HOH . J 5 HOH A 195 895 224 HOH HOH . J 5 HOH A 196 896 256 HOH HOH . J 5 HOH A 197 897 99 HOH HOH . J 5 HOH A 198 898 281 HOH HOH . J 5 HOH A 199 899 145 HOH HOH . J 5 HOH A 200 900 201 HOH HOH . J 5 HOH A 201 901 259 HOH HOH . J 5 HOH A 202 902 222 HOH HOH . J 5 HOH A 203 903 228 HOH HOH . J 5 HOH A 204 904 172 HOH HOH . J 5 HOH A 205 905 74 HOH HOH . J 5 HOH A 206 906 280 HOH HOH . J 5 HOH A 207 907 158 HOH HOH . J 5 HOH A 208 908 213 HOH HOH . J 5 HOH A 209 909 254 HOH HOH . J 5 HOH A 210 910 207 HOH HOH . J 5 HOH A 211 911 84 HOH HOH . J 5 HOH A 212 912 137 HOH HOH . J 5 HOH A 213 913 162 HOH HOH . J 5 HOH A 214 914 66 HOH HOH . J 5 HOH A 215 915 215 HOH HOH . J 5 HOH A 216 916 177 HOH HOH . J 5 HOH A 217 917 171 HOH HOH . J 5 HOH A 218 918 219 HOH HOH . J 5 HOH A 219 919 269 HOH HOH . J 5 HOH A 220 920 220 HOH HOH . J 5 HOH A 221 921 229 HOH HOH . J 5 HOH A 222 922 167 HOH HOH . J 5 HOH A 223 923 234 HOH HOH . J 5 HOH A 224 924 148 HOH HOH . J 5 HOH A 225 925 195 HOH HOH . J 5 HOH A 226 926 216 HOH HOH . J 5 HOH A 227 927 261 HOH HOH . J 5 HOH A 228 928 163 HOH HOH . J 5 HOH A 229 929 260 HOH HOH . J 5 HOH A 230 930 194 HOH HOH . J 5 HOH A 231 931 250 HOH HOH . J 5 HOH A 232 932 239 HOH HOH . J 5 HOH A 233 933 237 HOH HOH . J 5 HOH A 234 934 262 HOH HOH . J 5 HOH A 235 935 197 HOH HOH . J 5 HOH A 236 936 132 HOH HOH . J 5 HOH A 237 937 238 HOH HOH . J 5 HOH A 238 938 212 HOH HOH . J 5 HOH A 239 939 149 HOH HOH . J 5 HOH A 240 940 210 HOH HOH . J 5 HOH A 241 941 218 HOH HOH . J 5 HOH A 242 942 186 HOH HOH . J 5 HOH A 243 943 270 HOH HOH . J 5 HOH A 244 944 251 HOH HOH . J 5 HOH A 245 945 268 HOH HOH . J 5 HOH A 246 946 182 HOH HOH . J 5 HOH A 247 947 271 HOH HOH . J 5 HOH A 248 948 230 HOH HOH . J 5 HOH A 249 949 123 HOH HOH . J 5 HOH A 250 950 206 HOH HOH . J 5 HOH A 251 951 255 HOH HOH . J 5 HOH A 252 952 58 HOH HOH . J 5 HOH A 253 953 226 HOH HOH . J 5 HOH A 254 954 253 HOH HOH . J 5 HOH A 255 955 103 HOH HOH . J 5 HOH A 256 956 179 HOH HOH . J 5 HOH A 257 957 246 HOH HOH . J 5 HOH A 258 958 196 HOH HOH . J 5 HOH A 259 959 130 HOH HOH . J 5 HOH A 260 960 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 26.993 30.744 56.218 1 43.46 ? C1 EDO 604 A 1 HETATM 2 O O1 EDO . . . E 3 26.87 32.145 56.497 1 50.55 ? O1 EDO 604 A 1 HETATM 3 C C2 EDO . . . E 3 26.436 30.554 54.826 1 50.28 ? C2 EDO 604 A 1 HETATM 4 O O2 EDO . . . E 3 27.059 29.439 54.159 1 40.03 ? O2 EDO 604 A 1 HETATM 5 H H11 EDO . . . E 3 28.041 30.437 56.256 1 52.26 ? H11 EDO 604 A 1 HETATM 6 H H12 EDO . . . E 3 26.424 30.157 56.942 1 52.26 ? H12 EDO 604 A 1 HETATM 7 H HO1 EDO . . . E 3 27.213 32.329 57.382 1 60.76 ? HO1 EDO 604 A 1 HETATM 8 H H21 EDO . . . E 3 25.359 30.384 54.887 1 60.45 ? H21 EDO 604 A 1 HETATM 9 H H22 EDO . . . E 3 26.599 31.463 54.243 1 60.45 ? H22 EDO 604 A 1 HETATM 10 H HO2 EDO . . . E 3 26.683 29.343 53.273 1 48.14 ? HO2 EDO 604 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 740 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 10 #