data_5NZW # _model_server_result.job_id LmgwPgOQ1tAnegE5iuJ10Q _model_server_result.datetime_utc '2025-02-26 17:54:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nzw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 5NZW # _exptl.entry_id 5NZW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.58 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ceftriaxone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NZW _cell.length_a 51.356 _cell.length_b 58.495 _cell.length_c 112.538 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NZW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 35 A HIS 732 1_555 B NI NI . A NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 A ND1 HIS 37 A HIS 734 1_555 B NI NI . A NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 A NE2 HIS 96 A HIS 793 1_555 B NI NI . A NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc4 A OD2 ASP 118 A ASP 815 1_555 B NI NI . A NI 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 B NI NI . A NI 1101 1_555 C O1 9F2 . A 9F2 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc6 B NI NI . A NI 1101 1_555 C O2 9F2 . A 9F2 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'C18 H18 N8 O7 S3' _chem_comp.formula_weight 554.58 _chem_comp.id 9F2 _chem_comp.mon_nstd_flag . _chem_comp.name Ceftriaxone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C17 9F2 sing 1 n n C17 N8 9F2 doub 2 n y C17 S3 9F2 sing 3 n y N8 C15 9F2 sing 4 n y S3 C16 9F2 sing 5 n y C15 C16 9F2 doub 6 n y C15 C13 9F2 sing 7 n n N5 C11 9F2 sing 8 n n N5 C12 9F2 sing 9 n n O3 C10 9F2 doub 10 n n C14 O5 9F2 sing 11 n n C13 N6 9F2 doub 12 e n C13 C12 9F2 sing 13 n n C11 C10 9F2 sing 14 n n C11 C1 9F2 sing 15 n n N6 O5 9F2 sing 16 n n C12 O4 9F2 doub 17 n n C10 N4 9F2 sing 18 n n O6 C18 9F2 doub 19 n n C1 N4 9F2 sing 20 n n C1 S1 9F2 sing 21 n n N4 C9 9F2 sing 22 n n C18 C9 9F2 sing 23 n n C18 O7 9F2 sing 24 n n C9 C3 9F2 doub 25 n n S1 C2 9F2 sing 26 n n C3 C2 9F2 sing 27 n n C3 C4 9F2 sing 28 n n C4 S2 9F2 sing 29 n n S2 C5 9F2 sing 30 n n C5 N1 9F2 doub 31 n n C5 N3 9F2 sing 32 n n N1 C6 9F2 sing 33 n n C8 N3 9F2 sing 34 n n N3 N2 9F2 sing 35 n n C6 O1 9F2 doub 36 n n C6 C7 9F2 sing 37 n n N2 C7 9F2 sing 38 n n C7 O2 9F2 doub 39 n n C1 H1 9F2 sing 40 n n C2 H2 9F2 sing 41 n n C2 H3 9F2 sing 42 n n C4 H5 9F2 sing 43 n n C4 H6 9F2 sing 44 n n N2 H7 9F2 sing 45 n n C8 H8 9F2 sing 46 n n C8 H9 9F2 sing 47 n n C8 H10 9F2 sing 48 n n C11 H12 9F2 sing 49 n n N5 H13 9F2 sing 50 n n C14 H14 9F2 sing 51 n n C14 H15 9F2 sing 52 n n C14 H16 9F2 sing 53 n n C16 H18 9F2 sing 54 n n N7 H21 9F2 sing 55 n n N7 H22 9F2 sing 56 n n O7 H26 9F2 sing 57 n n # _atom_sites.entry_id 5NZW _atom_sites.fract_transf_matrix[1][1] 0.019472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 1101 1 NI NI . C 3 9F2 A 1 1102 1 9F2 cfr . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9F2 . . . C 3 7.661 19.398 20.62 1 120.41 ? C1 9F2 1102 A 1 HETATM 2 S S1 9F2 . . . C 3 8.558 20.243 21.932 1 103.56 ? S1 9F2 1102 A 1 HETATM 3 C C2 9F2 . . . C 3 7.359 19.94 23.259 1 100.65 ? C2 9F2 1102 A 1 HETATM 4 C C3 9F2 . . . C 3 6.243 18.944 23.018 1 103.94 ? C3 9F2 1102 A 1 HETATM 5 C C4 9F2 . . . C 3 6.013 17.959 24.16 1 104.52 ? C4 9F2 1102 A 1 HETATM 6 S S2 9F2 . . . C 3 5.37 18.784 25.652 1 93.12 ? S2 9F2 1102 A 1 HETATM 7 C C5 9F2 . . . C 3 6.381 18.184 26.951 1 83.91 ? C5 9F2 1102 A 1 HETATM 8 N N1 9F2 . . . C 3 6.674 16.88 27.046 1 81.46 ? N1 9F2 1102 A 1 HETATM 9 C C6 9F2 . . . C 3 7.457 16.46 28.095 1 74.9 ? C6 9F2 1102 A 1 HETATM 10 O O1 9F2 . . . C 3 7.702 15.237 28.152 1 66.16 ? O1 9F2 1102 A 1 HETATM 11 C C7 9F2 . . . C 3 7.938 17.337 29.042 1 73.6 ? C7 9F2 1102 A 1 HETATM 12 O O2 9F2 . . . C 3 8.632 16.948 29.963 1 69.31 ? O2 9F2 1102 A 1 HETATM 13 N N2 9F2 . . . C 3 7.637 18.671 28.955 1 78.9 ? N2 9F2 1102 A 1 HETATM 14 N N3 9F2 . . . C 3 6.83 19.102 27.874 1 83.28 ? N3 9F2 1102 A 1 HETATM 15 C C8 9F2 . . . C 3 6.512 20.531 27.775 1 85.35 ? C8 9F2 1102 A 1 HETATM 16 C C9 9F2 . . . C 3 5.486 19.03 21.893 1 115.65 ? C9 9F2 1102 A 1 HETATM 17 N N4 9F2 . . . C 3 6.21 19.52 20.807 1 118.58 ? N4 9F2 1102 A 1 HETATM 18 C C10 9F2 . . . C 3 5.902 20.195 19.665 1 121.35 ? C10 9F2 1102 A 1 HETATM 19 O O3 9F2 . . . C 3 4.866 20.626 19.22 1 114.48 ? O3 9F2 1102 A 1 HETATM 20 C C11 9F2 . . . C 3 7.388 20.171 19.233 1 122.79 ? C11 9F2 1102 A 1 HETATM 21 N N5 9F2 . . . C 3 8.104 21.391 18.942 1 121.96 ? N5 9F2 1102 A 1 HETATM 22 C C12 9F2 . . . C 3 7.846 22.617 19.46 1 126.51 ? C12 9F2 1102 A 1 HETATM 23 O O4 9F2 . . . C 3 6.931 22.83 20.258 1 129.96 ? O4 9F2 1102 A 1 HETATM 24 C C13 9F2 . . . C 3 8.746 23.771 19.102 1 125.68 ? C13 9F2 1102 A 1 HETATM 25 N N6 9F2 . . . C 3 10.002 23.668 19.363 1 129.83 ? N6 9F2 1102 A 1 HETATM 26 O O5 9F2 . . . C 3 10.527 24.849 19.925 1 126.82 ? O5 9F2 1102 A 1 HETATM 27 C C14 9F2 . . . C 3 11.489 25.428 19.036 1 119.33 ? C14 9F2 1102 A 1 HETATM 28 C C15 9F2 . . . C 3 8.222 24.929 18.359 1 121.57 ? C15 9F2 1102 A 1 HETATM 29 C C16 9F2 . . . C 3 8.367 26.227 18.711 1 124.74 ? C16 9F2 1102 A 1 HETATM 30 S S3 9F2 . . . C 3 7.869 27.248 17.43 1 118.57 ? S3 9F2 1102 A 1 HETATM 31 C C17 9F2 . . . C 3 7.493 25.817 16.505 1 116.48 ? C17 9F2 1102 A 1 HETATM 32 N N7 9F2 . . . C 3 7.24 25.891 15.18 1 121.58 ? N7 9F2 1102 A 1 HETATM 33 N N8 9F2 . . . C 3 7.488 24.708 17.205 1 111.95 ? N8 9F2 1102 A 1 HETATM 34 C C18 9F2 . . . C 3 3.997 18.685 21.772 1 117.94 ? C18 9F2 1102 A 1 HETATM 35 O O6 9F2 . . . C 3 3.561 18.482 20.652 1 111.27 ? O6 9F2 1102 A 1 HETATM 36 O O7 9F2 . . . C 3 3.339 18.647 22.797 1 118.37 ? O7 9F2 1102 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #