data_5O00 # _model_server_result.job_id ReaApmUXU_3mJJQ8eXK-QA _model_server_result.datetime_utc '2024-11-25 05:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 5O00 # _exptl.entry_id 5O00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O00 _cell.length_a 73.466 _cell.length_b 73.466 _cell.length_c 94.945 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 187 n n C1 C2 GOL sing 188 n n C1 H11 GOL sing 189 n n C1 H12 GOL sing 190 n n O1 HO1 GOL sing 191 n n C2 O2 GOL sing 192 n n C2 C3 GOL sing 193 n n C2 H2 GOL sing 194 n n O2 HO2 GOL sing 195 n n C3 O3 GOL sing 196 n n C3 H31 GOL sing 197 n n C3 H32 GOL sing 198 n n O3 HO3 GOL sing 199 n n # _atom_sites.entry_id 5O00 _atom_sites.fract_transf_matrix[1][1] 0.013612 _atom_sites.fract_transf_matrix[1][2] 0.007859 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDS A 1 301 298 GDS GDS . C 3 NIN A 1 302 299 NIN NIN . D 4 SO4 A 1 303 300 SO4 SO4 . E 4 SO4 A 1 304 301 SO4 SO4 . F 4 SO4 A 1 305 302 SO4 SO4 . G 4 SO4 A 1 306 303 SO4 SO4 . H 5 GOL A 1 307 304 GOL GOL . I 5 GOL A 1 308 305 GOL GOL . J 5 GOL A 1 309 306 GOL GOL . K 5 GOL A 1 310 307 GOL GOL . L 5 GOL A 1 311 308 GOL GOL . M 4 SO4 A 1 312 309 SO4 SO4 . N 6 HOH A 1 401 60 HOH HOH . N 6 HOH A 2 402 69 HOH HOH . N 6 HOH A 3 403 67 HOH HOH . N 6 HOH A 4 404 123 HOH HOH . N 6 HOH A 5 405 79 HOH HOH . N 6 HOH A 6 406 36 HOH HOH . N 6 HOH A 7 407 24 HOH HOH . N 6 HOH A 8 408 74 HOH HOH . N 6 HOH A 9 409 68 HOH HOH . N 6 HOH A 10 410 1 HOH HOH . N 6 HOH A 11 411 82 HOH HOH . N 6 HOH A 12 412 38 HOH HOH . N 6 HOH A 13 413 31 HOH HOH . N 6 HOH A 14 414 128 HOH HOH . N 6 HOH A 15 415 111 HOH HOH . N 6 HOH A 16 416 61 HOH HOH . N 6 HOH A 17 417 6 HOH HOH . N 6 HOH A 18 418 56 HOH HOH . N 6 HOH A 19 419 11 HOH HOH . N 6 HOH A 20 420 7 HOH HOH . N 6 HOH A 21 421 4 HOH HOH . N 6 HOH A 22 422 16 HOH HOH . N 6 HOH A 23 423 29 HOH HOH . N 6 HOH A 24 424 54 HOH HOH . N 6 HOH A 25 425 47 HOH HOH . N 6 HOH A 26 426 3 HOH HOH . N 6 HOH A 27 427 35 HOH HOH . N 6 HOH A 28 428 103 HOH HOH . N 6 HOH A 29 429 89 HOH HOH . N 6 HOH A 30 430 14 HOH HOH . N 6 HOH A 31 431 91 HOH HOH . N 6 HOH A 32 432 125 HOH HOH . N 6 HOH A 33 433 71 HOH HOH . N 6 HOH A 34 434 13 HOH HOH . N 6 HOH A 35 435 57 HOH HOH . N 6 HOH A 36 436 25 HOH HOH . N 6 HOH A 37 437 129 HOH HOH . N 6 HOH A 38 438 66 HOH HOH . N 6 HOH A 39 439 42 HOH HOH . N 6 HOH A 40 440 41 HOH HOH . N 6 HOH A 41 441 48 HOH HOH . N 6 HOH A 42 442 37 HOH HOH . N 6 HOH A 43 443 50 HOH HOH . N 6 HOH A 44 444 124 HOH HOH . N 6 HOH A 45 445 23 HOH HOH . N 6 HOH A 46 446 40 HOH HOH . N 6 HOH A 47 447 10 HOH HOH . N 6 HOH A 48 448 55 HOH HOH . N 6 HOH A 49 449 94 HOH HOH . N 6 HOH A 50 450 75 HOH HOH . N 6 HOH A 51 451 26 HOH HOH . N 6 HOH A 52 452 32 HOH HOH . N 6 HOH A 53 453 63 HOH HOH . N 6 HOH A 54 454 28 HOH HOH . N 6 HOH A 55 455 20 HOH HOH . N 6 HOH A 56 456 59 HOH HOH . N 6 HOH A 57 457 2 HOH HOH . N 6 HOH A 58 458 30 HOH HOH . N 6 HOH A 59 459 80 HOH HOH . N 6 HOH A 60 460 43 HOH HOH . N 6 HOH A 61 461 119 HOH HOH . N 6 HOH A 62 462 8 HOH HOH . N 6 HOH A 63 463 18 HOH HOH . N 6 HOH A 64 464 39 HOH HOH . N 6 HOH A 65 465 113 HOH HOH . N 6 HOH A 66 466 19 HOH HOH . N 6 HOH A 67 467 45 HOH HOH . N 6 HOH A 68 468 22 HOH HOH . N 6 HOH A 69 469 27 HOH HOH . N 6 HOH A 70 470 110 HOH HOH . N 6 HOH A 71 471 15 HOH HOH . N 6 HOH A 72 472 93 HOH HOH . N 6 HOH A 73 473 130 HOH HOH . N 6 HOH A 74 474 107 HOH HOH . N 6 HOH A 75 475 12 HOH HOH . N 6 HOH A 76 476 65 HOH HOH . N 6 HOH A 77 477 70 HOH HOH . N 6 HOH A 78 478 58 HOH HOH . N 6 HOH A 79 479 52 HOH HOH . N 6 HOH A 80 480 73 HOH HOH . N 6 HOH A 81 481 53 HOH HOH . N 6 HOH A 82 482 46 HOH HOH . N 6 HOH A 83 483 9 HOH HOH . N 6 HOH A 84 484 109 HOH HOH . N 6 HOH A 85 485 17 HOH HOH . N 6 HOH A 86 486 21 HOH HOH . N 6 HOH A 87 487 97 HOH HOH . N 6 HOH A 88 488 120 HOH HOH . N 6 HOH A 89 489 5 HOH HOH . N 6 HOH A 90 490 116 HOH HOH . N 6 HOH A 91 491 72 HOH HOH . N 6 HOH A 92 492 112 HOH HOH . N 6 HOH A 93 493 99 HOH HOH . N 6 HOH A 94 494 85 HOH HOH . N 6 HOH A 95 495 127 HOH HOH . N 6 HOH A 96 496 105 HOH HOH . N 6 HOH A 97 497 64 HOH HOH . N 6 HOH A 98 498 132 HOH HOH . N 6 HOH A 99 499 100 HOH HOH . N 6 HOH A 100 500 87 HOH HOH . N 6 HOH A 101 501 98 HOH HOH . N 6 HOH A 102 502 44 HOH HOH . N 6 HOH A 103 503 108 HOH HOH . N 6 HOH A 104 504 118 HOH HOH . N 6 HOH A 105 505 104 HOH HOH . N 6 HOH A 106 506 95 HOH HOH . N 6 HOH A 107 507 96 HOH HOH . N 6 HOH A 108 508 106 HOH HOH . N 6 HOH A 109 509 126 HOH HOH . N 6 HOH A 110 510 102 HOH HOH . N 6 HOH A 111 511 122 HOH HOH . N 6 HOH A 112 512 78 HOH HOH . N 6 HOH A 113 513 51 HOH HOH . N 6 HOH A 114 514 88 HOH HOH . N 6 HOH A 115 515 114 HOH HOH . N 6 HOH A 116 516 117 HOH HOH . N 6 HOH A 117 517 121 HOH HOH . N 6 HOH A 118 518 131 HOH HOH . N 6 HOH A 119 519 86 HOH HOH . N 6 HOH A 120 520 83 HOH HOH . N 6 HOH A 121 521 101 HOH HOH . N 6 HOH A 122 522 76 HOH HOH . N 6 HOH A 123 523 92 HOH HOH . N 6 HOH A 124 524 84 HOH HOH . N 6 HOH A 125 525 62 HOH HOH . N 6 HOH A 126 526 33 HOH HOH . N 6 HOH A 127 527 115 HOH HOH . N 6 HOH A 128 528 77 HOH HOH . N 6 HOH A 129 529 90 HOH HOH . N 6 HOH A 130 530 81 HOH HOH . N 6 HOH A 131 531 34 HOH HOH . N 6 HOH A 132 532 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 20.443 2.325 20.575 1 60.68 ? C1 GOL 308 A 1 HETATM 2 O O1 GOL . . . I 5 21.049 1.846 19.402 1 41.5 ? O1 GOL 308 A 1 HETATM 3 C C2 GOL . . . I 5 20.831 3.829 20.688 1 60 ? C2 GOL 308 A 1 HETATM 4 O O2 GOL . . . I 5 19.927 4.651 20.03 1 53.02 ? O2 GOL 308 A 1 HETATM 5 C C3 GOL . . . I 5 20.908 4.15 22.207 1 54.91 ? C3 GOL 308 A 1 HETATM 6 O O3 GOL . . . I 5 21.56 5.381 22.317 1 48.93 ? O3 GOL 308 A 1 HETATM 7 H H11 GOL . . . I 5 20.732 1.853 21.372 1 72.74 ? H11 GOL 308 A 1 HETATM 8 H H12 GOL . . . I 5 19.478 2.233 20.544 1 72.74 ? H12 GOL 308 A 1 HETATM 9 H HO1 GOL . . . I 5 21.176 1.013 19.518 1 49.71 ? HO1 GOL 308 A 1 HETATM 10 H H2 GOL . . . I 5 21.688 3.988 20.262 1 71.93 ? H2 GOL 308 A 1 HETATM 11 H HO2 GOL . . . I 5 19.6 4.211 19.38 1 63.54 ? HO2 GOL 308 A 1 HETATM 12 H H31 GOL . . . I 5 21.357 3.424 22.668 1 65.81 ? H31 GOL 308 A 1 HETATM 13 H H32 GOL . . . I 5 20.013 4.178 22.579 1 65.81 ? H32 GOL 308 A 1 HETATM 14 H HO3 GOL . . . I 5 22.38 5.212 22.466 1 58.64 ? HO3 GOL 308 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #