data_5O03 # _model_server_result.job_id zvZfAwHMOPOVDA59V8lAVA _model_server_result.datetime_utc '2024-10-28 02:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":608}' # _entry.id 5O03 # _exptl.entry_id 5O03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O03 _cell.length_a 109.66 _cell.length_b 109.66 _cell.length_c 268.32 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 C SG CYS 50 C CYS 50 1_555 C SG CYS 110 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 50 D CYS 50 1_555 D SG CYS 110 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5O03 _atom_sites.fract_transf_matrix[1][1] 0.009119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 IMD A 1 601 2 IMD IMD . F 4 EDO A 1 602 1 EDO EDO . G 4 EDO A 1 603 3 EDO EDO . H 4 EDO A 1 604 4 EDO EDO . I 4 EDO A 1 605 7 EDO EDO . J 4 EDO A 1 606 8 EDO EDO . K 4 EDO A 1 607 11 EDO EDO . L 4 EDO A 1 608 13 EDO EDO . M 4 EDO A 1 609 15 EDO EDO . N 3 IMD B 1 601 1 IMD IMD . O 4 EDO B 1 602 2 EDO EDO . P 4 EDO B 1 603 5 EDO EDO . Q 4 EDO B 1 604 6 EDO EDO . R 4 EDO B 1 605 9 EDO EDO . S 4 EDO B 1 606 10 EDO EDO . T 4 EDO B 1 607 12 EDO EDO . U 4 EDO B 1 608 14 EDO EDO . V 5 HOH A 1 701 62 HOH HOH . V 5 HOH A 2 702 83 HOH HOH . V 5 HOH A 3 703 11 HOH HOH . V 5 HOH A 4 704 61 HOH HOH . V 5 HOH A 5 705 88 HOH HOH . V 5 HOH A 6 706 149 HOH HOH . V 5 HOH A 7 707 220 HOH HOH . V 5 HOH A 8 708 240 HOH HOH . V 5 HOH A 9 709 134 HOH HOH . V 5 HOH A 10 710 104 HOH HOH . V 5 HOH A 11 711 118 HOH HOH . V 5 HOH A 12 712 101 HOH HOH . V 5 HOH A 13 713 135 HOH HOH . V 5 HOH A 14 714 1 HOH HOH . V 5 HOH A 15 715 18 HOH HOH . V 5 HOH A 16 716 89 HOH HOH . V 5 HOH A 17 717 22 HOH HOH . V 5 HOH A 18 718 5 HOH HOH . V 5 HOH A 19 719 2 HOH HOH . V 5 HOH A 20 720 76 HOH HOH . V 5 HOH A 21 721 199 HOH HOH . V 5 HOH A 22 722 23 HOH HOH . V 5 HOH A 23 723 14 HOH HOH . V 5 HOH A 24 724 100 HOH HOH . V 5 HOH A 25 725 29 HOH HOH . V 5 HOH A 26 726 125 HOH HOH . V 5 HOH A 27 727 74 HOH HOH . V 5 HOH A 28 728 263 HOH HOH . V 5 HOH A 29 729 113 HOH HOH . V 5 HOH A 30 730 96 HOH HOH . V 5 HOH A 31 731 50 HOH HOH . V 5 HOH A 32 732 244 HOH HOH . V 5 HOH A 33 733 15 HOH HOH . V 5 HOH A 34 734 45 HOH HOH . V 5 HOH A 35 735 9 HOH HOH . V 5 HOH A 36 736 17 HOH HOH . V 5 HOH A 37 737 164 HOH HOH . V 5 HOH A 38 738 54 HOH HOH . V 5 HOH A 39 739 106 HOH HOH . V 5 HOH A 40 740 40 HOH HOH . V 5 HOH A 41 741 121 HOH HOH . V 5 HOH A 42 742 209 HOH HOH . V 5 HOH A 43 743 84 HOH HOH . V 5 HOH A 44 744 140 HOH HOH . V 5 HOH A 45 745 188 HOH HOH . V 5 HOH A 46 746 49 HOH HOH . V 5 HOH A 47 747 79 HOH HOH . V 5 HOH A 48 748 201 HOH HOH . V 5 HOH A 49 749 55 HOH HOH . V 5 HOH A 50 750 105 HOH HOH . V 5 HOH A 51 751 155 HOH HOH . V 5 HOH A 52 752 41 HOH HOH . V 5 HOH A 53 753 39 HOH HOH . V 5 HOH A 54 754 56 HOH HOH . V 5 HOH A 55 755 264 HOH HOH . V 5 HOH A 56 756 78 HOH HOH . V 5 HOH A 57 757 116 HOH HOH . V 5 HOH A 58 758 119 HOH HOH . V 5 HOH A 59 759 42 HOH HOH . V 5 HOH A 60 760 30 HOH HOH . V 5 HOH A 61 761 195 HOH HOH . V 5 HOH A 62 762 242 HOH HOH . V 5 HOH A 63 763 148 HOH HOH . V 5 HOH A 64 764 52 HOH HOH . V 5 HOH A 65 765 137 HOH HOH . V 5 HOH A 66 766 33 HOH HOH . V 5 HOH A 67 767 65 HOH HOH . V 5 HOH A 68 768 187 HOH HOH . V 5 HOH A 69 769 34 HOH HOH . V 5 HOH A 70 770 66 HOH HOH . V 5 HOH A 71 771 68 HOH HOH . V 5 HOH A 72 772 64 HOH HOH . V 5 HOH A 73 773 69 HOH HOH . V 5 HOH A 74 774 117 HOH HOH . V 5 HOH A 75 775 235 HOH HOH . V 5 HOH A 76 776 13 HOH HOH . V 5 HOH A 77 777 237 HOH HOH . V 5 HOH A 78 778 176 HOH HOH . V 5 HOH A 79 779 25 HOH HOH . V 5 HOH A 80 780 4 HOH HOH . V 5 HOH A 81 781 91 HOH HOH . V 5 HOH A 82 782 26 HOH HOH . V 5 HOH A 83 783 129 HOH HOH . V 5 HOH A 84 784 133 HOH HOH . V 5 HOH A 85 785 87 HOH HOH . V 5 HOH A 86 786 85 HOH HOH . V 5 HOH A 87 787 20 HOH HOH . V 5 HOH A 88 788 31 HOH HOH . V 5 HOH A 89 789 90 HOH HOH . V 5 HOH A 90 790 58 HOH HOH . V 5 HOH A 91 791 46 HOH HOH . V 5 HOH A 92 792 82 HOH HOH . V 5 HOH A 93 793 200 HOH HOH . V 5 HOH A 94 794 122 HOH HOH . V 5 HOH A 95 795 126 HOH HOH . V 5 HOH A 96 796 44 HOH HOH . V 5 HOH A 97 797 19 HOH HOH . V 5 HOH A 98 798 261 HOH HOH . V 5 HOH A 99 799 60 HOH HOH . V 5 HOH A 100 800 47 HOH HOH . V 5 HOH A 101 801 233 HOH HOH . V 5 HOH A 102 802 215 HOH HOH . V 5 HOH A 103 803 211 HOH HOH . V 5 HOH A 104 804 141 HOH HOH . V 5 HOH A 105 805 102 HOH HOH . V 5 HOH A 106 806 216 HOH HOH . V 5 HOH A 107 807 248 HOH HOH . V 5 HOH A 108 808 95 HOH HOH . V 5 HOH A 109 809 144 HOH HOH . V 5 HOH A 110 810 99 HOH HOH . V 5 HOH A 111 811 192 HOH HOH . V 5 HOH A 112 812 250 HOH HOH . W 5 HOH B 1 701 238 HOH HOH . W 5 HOH B 2 702 246 HOH HOH . W 5 HOH B 3 703 157 HOH HOH . W 5 HOH B 4 704 234 HOH HOH . W 5 HOH B 5 705 208 HOH HOH . W 5 HOH B 6 706 219 HOH HOH . W 5 HOH B 7 707 127 HOH HOH . W 5 HOH B 8 708 239 HOH HOH . W 5 HOH B 9 709 212 HOH HOH . W 5 HOH B 10 710 75 HOH HOH . W 5 HOH B 11 711 86 HOH HOH . W 5 HOH B 12 712 36 HOH HOH . W 5 HOH B 13 713 189 HOH HOH . W 5 HOH B 14 714 8 HOH HOH . W 5 HOH B 15 715 43 HOH HOH . W 5 HOH B 16 716 111 HOH HOH . W 5 HOH B 17 717 249 HOH HOH . W 5 HOH B 18 718 24 HOH HOH . W 5 HOH B 19 719 168 HOH HOH . W 5 HOH B 20 720 150 HOH HOH . W 5 HOH B 21 721 6 HOH HOH . W 5 HOH B 22 722 132 HOH HOH . W 5 HOH B 23 723 73 HOH HOH . W 5 HOH B 24 724 80 HOH HOH . W 5 HOH B 25 725 108 HOH HOH . W 5 HOH B 26 726 231 HOH HOH . W 5 HOH B 27 727 28 HOH HOH . W 5 HOH B 28 728 27 HOH HOH . W 5 HOH B 29 729 93 HOH HOH . W 5 HOH B 30 730 151 HOH HOH . W 5 HOH B 31 731 206 HOH HOH . W 5 HOH B 32 732 53 HOH HOH . W 5 HOH B 33 733 194 HOH HOH . W 5 HOH B 34 734 128 HOH HOH . W 5 HOH B 35 735 166 HOH HOH . W 5 HOH B 36 736 37 HOH HOH . W 5 HOH B 37 737 255 HOH HOH . W 5 HOH B 38 738 120 HOH HOH . W 5 HOH B 39 739 110 HOH HOH . W 5 HOH B 40 740 172 HOH HOH . W 5 HOH B 41 741 97 HOH HOH . W 5 HOH B 42 742 94 HOH HOH . W 5 HOH B 43 743 226 HOH HOH . W 5 HOH B 44 744 38 HOH HOH . W 5 HOH B 45 745 161 HOH HOH . W 5 HOH B 46 746 115 HOH HOH . W 5 HOH B 47 747 131 HOH HOH . W 5 HOH B 48 748 153 HOH HOH . W 5 HOH B 49 749 145 HOH HOH . W 5 HOH B 50 750 92 HOH HOH . W 5 HOH B 51 751 138 HOH HOH . W 5 HOH B 52 752 146 HOH HOH . W 5 HOH B 53 753 77 HOH HOH . W 5 HOH B 54 754 223 HOH HOH . W 5 HOH B 55 755 35 HOH HOH . W 5 HOH B 56 756 123 HOH HOH . W 5 HOH B 57 757 136 HOH HOH . W 5 HOH B 58 758 156 HOH HOH . W 5 HOH B 59 759 57 HOH HOH . W 5 HOH B 60 760 251 HOH HOH . W 5 HOH B 61 761 154 HOH HOH . W 5 HOH B 62 762 191 HOH HOH . W 5 HOH B 63 763 252 HOH HOH . W 5 HOH B 64 764 130 HOH HOH . W 5 HOH B 65 765 72 HOH HOH . W 5 HOH B 66 766 10 HOH HOH . W 5 HOH B 67 767 51 HOH HOH . W 5 HOH B 68 768 71 HOH HOH . W 5 HOH B 69 769 163 HOH HOH . W 5 HOH B 70 770 210 HOH HOH . W 5 HOH B 71 771 32 HOH HOH . W 5 HOH B 72 772 232 HOH HOH . W 5 HOH B 73 773 152 HOH HOH . W 5 HOH B 74 774 63 HOH HOH . W 5 HOH B 75 775 162 HOH HOH . W 5 HOH B 76 776 257 HOH HOH . W 5 HOH B 77 777 213 HOH HOH . W 5 HOH B 78 778 258 HOH HOH . W 5 HOH B 79 779 196 HOH HOH . W 5 HOH B 80 780 178 HOH HOH . W 5 HOH B 81 781 217 HOH HOH . W 5 HOH B 82 782 103 HOH HOH . W 5 HOH B 83 783 193 HOH HOH . W 5 HOH B 84 784 169 HOH HOH . X 5 HOH C 1 201 259 HOH HOH . X 5 HOH C 2 202 203 HOH HOH . X 5 HOH C 3 203 170 HOH HOH . X 5 HOH C 4 204 175 HOH HOH . X 5 HOH C 5 205 12 HOH HOH . X 5 HOH C 6 206 59 HOH HOH . X 5 HOH C 7 207 228 HOH HOH . X 5 HOH C 8 208 202 HOH HOH . X 5 HOH C 9 209 174 HOH HOH . X 5 HOH C 10 210 218 HOH HOH . X 5 HOH C 11 211 112 HOH HOH . X 5 HOH C 12 212 185 HOH HOH . X 5 HOH C 13 213 177 HOH HOH . X 5 HOH C 14 214 214 HOH HOH . X 5 HOH C 15 215 186 HOH HOH . Y 5 HOH D 1 201 159 HOH HOH . Y 5 HOH D 2 202 3 HOH HOH . Y 5 HOH D 3 203 67 HOH HOH . Y 5 HOH D 4 204 109 HOH HOH . Y 5 HOH D 5 205 179 HOH HOH . Y 5 HOH D 6 206 7 HOH HOH . Y 5 HOH D 7 207 81 HOH HOH . Y 5 HOH D 8 208 48 HOH HOH . Y 5 HOH D 9 209 260 HOH HOH . Y 5 HOH D 10 210 16 HOH HOH . Y 5 HOH D 11 211 142 HOH HOH . Y 5 HOH D 12 212 241 HOH HOH . Y 5 HOH D 13 213 158 HOH HOH . Y 5 HOH D 14 214 139 HOH HOH . Y 5 HOH D 15 215 247 HOH HOH . Y 5 HOH D 16 216 243 HOH HOH . Y 5 HOH D 17 217 197 HOH HOH . Y 5 HOH D 18 218 171 HOH HOH . Y 5 HOH D 19 219 229 HOH HOH . Y 5 HOH D 20 220 147 HOH HOH . Y 5 HOH D 21 221 262 HOH HOH . Y 5 HOH D 22 222 198 HOH HOH . Y 5 HOH D 23 223 222 HOH HOH . Y 5 HOH D 24 224 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . U 4 17.906 49.302 -36.354 1 65.35 ? C1 EDO 608 B 1 HETATM 2 O O1 EDO . . . U 4 18.581 48.578 -35.316 1 63.08 ? O1 EDO 608 B 1 HETATM 3 C C2 EDO . . . U 4 18.623 49.094 -37.684 1 57.87 ? C2 EDO 608 B 1 HETATM 4 O O2 EDO . . . U 4 18.792 47.692 -37.924 1 54.48 ? O2 EDO 608 B 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #