data_5O06 # _model_server_result.job_id iiVCpN1GJzElx-2i6Bnq2w _model_server_result.datetime_utc '2024-11-24 17:36:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5O06 # _exptl.entry_id 5O06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O06 _cell.length_a 75.867 _cell.length_b 124.503 _cell.length_c 118.567 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -59.2835 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5O06 _atom_sites.fract_transf_matrix[1][1] 0.013181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EDO B 1 201 1 EDO EDO . E 2 EDO C 1 201 2 EDO EDO . F 3 HOH A 1 201 272 HOH HOH . F 3 HOH A 2 202 152 HOH HOH . F 3 HOH A 3 203 194 HOH HOH . F 3 HOH A 4 204 202 HOH HOH . F 3 HOH A 5 205 144 HOH HOH . F 3 HOH A 6 206 219 HOH HOH . F 3 HOH A 7 207 186 HOH HOH . F 3 HOH A 8 208 170 HOH HOH . F 3 HOH A 9 209 75 HOH HOH . F 3 HOH A 10 210 21 HOH HOH . F 3 HOH A 11 211 260 HOH HOH . F 3 HOH A 12 212 30 HOH HOH . F 3 HOH A 13 213 180 HOH HOH . F 3 HOH A 14 214 223 HOH HOH . F 3 HOH A 15 215 151 HOH HOH . F 3 HOH A 16 216 134 HOH HOH . F 3 HOH A 17 217 6 HOH HOH . F 3 HOH A 18 218 52 HOH HOH . F 3 HOH A 19 219 77 HOH HOH . F 3 HOH A 20 220 221 HOH HOH . F 3 HOH A 21 221 80 HOH HOH . F 3 HOH A 22 222 16 HOH HOH . F 3 HOH A 23 223 150 HOH HOH . F 3 HOH A 24 224 70 HOH HOH . F 3 HOH A 25 225 37 HOH HOH . F 3 HOH A 26 226 4 HOH HOH . F 3 HOH A 27 227 274 HOH HOH . F 3 HOH A 28 228 118 HOH HOH . F 3 HOH A 29 229 63 HOH HOH . F 3 HOH A 30 230 138 HOH HOH . F 3 HOH A 31 231 148 HOH HOH . F 3 HOH A 32 232 143 HOH HOH . F 3 HOH A 33 233 167 HOH HOH . F 3 HOH A 34 234 263 HOH HOH . F 3 HOH A 35 235 259 HOH HOH . F 3 HOH A 36 236 68 HOH HOH . F 3 HOH A 37 237 3 HOH HOH . F 3 HOH A 38 238 229 HOH HOH . F 3 HOH A 39 239 154 HOH HOH . F 3 HOH A 40 240 42 HOH HOH . F 3 HOH A 41 241 193 HOH HOH . F 3 HOH A 42 242 256 HOH HOH . F 3 HOH A 43 243 124 HOH HOH . F 3 HOH A 44 244 187 HOH HOH . F 3 HOH A 45 245 64 HOH HOH . F 3 HOH A 46 246 10 HOH HOH . F 3 HOH A 47 247 17 HOH HOH . F 3 HOH A 48 248 9 HOH HOH . F 3 HOH A 49 249 165 HOH HOH . F 3 HOH A 50 250 276 HOH HOH . F 3 HOH A 51 251 82 HOH HOH . F 3 HOH A 52 252 13 HOH HOH . F 3 HOH A 53 253 104 HOH HOH . F 3 HOH A 54 254 8 HOH HOH . F 3 HOH A 55 255 112 HOH HOH . F 3 HOH A 56 256 92 HOH HOH . F 3 HOH A 57 257 109 HOH HOH . F 3 HOH A 58 258 26 HOH HOH . F 3 HOH A 59 259 243 HOH HOH . F 3 HOH A 60 260 135 HOH HOH . F 3 HOH A 61 261 139 HOH HOH . F 3 HOH A 62 262 198 HOH HOH . F 3 HOH A 63 263 213 HOH HOH . F 3 HOH A 64 264 88 HOH HOH . F 3 HOH A 65 265 110 HOH HOH . F 3 HOH A 66 266 98 HOH HOH . F 3 HOH A 67 267 79 HOH HOH . F 3 HOH A 68 268 157 HOH HOH . F 3 HOH A 69 269 176 HOH HOH . F 3 HOH A 70 270 1 HOH HOH . F 3 HOH A 71 271 31 HOH HOH . F 3 HOH A 72 272 24 HOH HOH . F 3 HOH A 73 273 215 HOH HOH . F 3 HOH A 74 274 242 HOH HOH . F 3 HOH A 75 275 61 HOH HOH . F 3 HOH A 76 276 47 HOH HOH . F 3 HOH A 77 277 161 HOH HOH . F 3 HOH A 78 278 210 HOH HOH . F 3 HOH A 79 279 128 HOH HOH . F 3 HOH A 80 280 49 HOH HOH . F 3 HOH A 81 281 122 HOH HOH . F 3 HOH A 82 282 203 HOH HOH . F 3 HOH A 83 283 244 HOH HOH . F 3 HOH A 84 284 175 HOH HOH . F 3 HOH A 85 285 57 HOH HOH . F 3 HOH A 86 286 160 HOH HOH . F 3 HOH A 87 287 108 HOH HOH . F 3 HOH A 88 288 284 HOH HOH . F 3 HOH A 89 289 233 HOH HOH . F 3 HOH A 90 290 81 HOH HOH . F 3 HOH A 91 291 218 HOH HOH . F 3 HOH A 92 292 204 HOH HOH . F 3 HOH A 93 293 231 HOH HOH . F 3 HOH A 94 294 220 HOH HOH . F 3 HOH A 95 295 258 HOH HOH . F 3 HOH A 96 296 248 HOH HOH . F 3 HOH A 97 297 235 HOH HOH . F 3 HOH A 98 298 226 HOH HOH . F 3 HOH A 99 299 239 HOH HOH . F 3 HOH A 100 300 262 HOH HOH . F 3 HOH A 101 301 166 HOH HOH . F 3 HOH A 102 302 251 HOH HOH . F 3 HOH A 103 303 267 HOH HOH . F 3 HOH A 104 304 273 HOH HOH . F 3 HOH A 105 305 234 HOH HOH . F 3 HOH A 106 306 275 HOH HOH . G 3 HOH B 1 301 271 HOH HOH . G 3 HOH B 2 302 145 HOH HOH . G 3 HOH B 3 303 238 HOH HOH . G 3 HOH B 4 304 201 HOH HOH . G 3 HOH B 5 305 62 HOH HOH . G 3 HOH B 6 306 253 HOH HOH . G 3 HOH B 7 307 214 HOH HOH . G 3 HOH B 8 308 177 HOH HOH . G 3 HOH B 9 309 50 HOH HOH . G 3 HOH B 10 310 33 HOH HOH . G 3 HOH B 11 311 156 HOH HOH . G 3 HOH B 12 312 58 HOH HOH . G 3 HOH B 13 313 54 HOH HOH . G 3 HOH B 14 314 199 HOH HOH . G 3 HOH B 15 315 168 HOH HOH . G 3 HOH B 16 316 5 HOH HOH . G 3 HOH B 17 317 117 HOH HOH . G 3 HOH B 18 318 87 HOH HOH . G 3 HOH B 19 319 84 HOH HOH . G 3 HOH B 20 320 132 HOH HOH . G 3 HOH B 21 321 222 HOH HOH . G 3 HOH B 22 322 116 HOH HOH . G 3 HOH B 23 323 195 HOH HOH . G 3 HOH B 24 324 97 HOH HOH . G 3 HOH B 25 325 86 HOH HOH . G 3 HOH B 26 326 99 HOH HOH . G 3 HOH B 27 327 22 HOH HOH . G 3 HOH B 28 328 29 HOH HOH . G 3 HOH B 29 329 174 HOH HOH . G 3 HOH B 30 330 172 HOH HOH . G 3 HOH B 31 331 146 HOH HOH . G 3 HOH B 32 332 25 HOH HOH . G 3 HOH B 33 333 115 HOH HOH . G 3 HOH B 34 334 126 HOH HOH . G 3 HOH B 35 335 7 HOH HOH . G 3 HOH B 36 336 278 HOH HOH . G 3 HOH B 37 337 178 HOH HOH . G 3 HOH B 38 338 184 HOH HOH . G 3 HOH B 39 339 136 HOH HOH . G 3 HOH B 40 340 27 HOH HOH . G 3 HOH B 41 341 34 HOH HOH . G 3 HOH B 42 342 2 HOH HOH . G 3 HOH B 43 343 281 HOH HOH . G 3 HOH B 44 344 130 HOH HOH . G 3 HOH B 45 345 140 HOH HOH . G 3 HOH B 46 346 18 HOH HOH . G 3 HOH B 47 347 185 HOH HOH . G 3 HOH B 48 348 283 HOH HOH . G 3 HOH B 49 349 162 HOH HOH . G 3 HOH B 50 350 48 HOH HOH . G 3 HOH B 51 351 12 HOH HOH . G 3 HOH B 52 352 209 HOH HOH . G 3 HOH B 53 353 147 HOH HOH . G 3 HOH B 54 354 14 HOH HOH . G 3 HOH B 55 355 141 HOH HOH . G 3 HOH B 56 356 137 HOH HOH . G 3 HOH B 57 357 60 HOH HOH . G 3 HOH B 58 358 227 HOH HOH . G 3 HOH B 59 359 71 HOH HOH . G 3 HOH B 60 360 46 HOH HOH . G 3 HOH B 61 361 91 HOH HOH . G 3 HOH B 62 362 240 HOH HOH . G 3 HOH B 63 363 20 HOH HOH . G 3 HOH B 64 364 159 HOH HOH . G 3 HOH B 65 365 74 HOH HOH . G 3 HOH B 66 366 45 HOH HOH . G 3 HOH B 67 367 56 HOH HOH . G 3 HOH B 68 368 106 HOH HOH . G 3 HOH B 69 369 285 HOH HOH . G 3 HOH B 70 370 169 HOH HOH . G 3 HOH B 71 371 72 HOH HOH . G 3 HOH B 72 372 121 HOH HOH . G 3 HOH B 73 373 102 HOH HOH . G 3 HOH B 74 374 125 HOH HOH . G 3 HOH B 75 375 158 HOH HOH . G 3 HOH B 76 376 163 HOH HOH . G 3 HOH B 77 377 114 HOH HOH . G 3 HOH B 78 378 38 HOH HOH . G 3 HOH B 79 379 269 HOH HOH . G 3 HOH B 80 380 217 HOH HOH . G 3 HOH B 81 381 181 HOH HOH . G 3 HOH B 82 382 224 HOH HOH . G 3 HOH B 83 383 257 HOH HOH . G 3 HOH B 84 384 247 HOH HOH . G 3 HOH B 85 385 268 HOH HOH . G 3 HOH B 86 386 190 HOH HOH . G 3 HOH B 87 387 230 HOH HOH . G 3 HOH B 88 388 153 HOH HOH . G 3 HOH B 89 389 250 HOH HOH . G 3 HOH B 90 390 191 HOH HOH . G 3 HOH B 91 391 261 HOH HOH . G 3 HOH B 92 392 155 HOH HOH . H 3 HOH C 1 301 173 HOH HOH . H 3 HOH C 2 302 208 HOH HOH . H 3 HOH C 3 303 103 HOH HOH . H 3 HOH C 4 304 55 HOH HOH . H 3 HOH C 5 305 111 HOH HOH . H 3 HOH C 6 306 200 HOH HOH . H 3 HOH C 7 307 245 HOH HOH . H 3 HOH C 8 308 11 HOH HOH . H 3 HOH C 9 309 41 HOH HOH . H 3 HOH C 10 310 192 HOH HOH . H 3 HOH C 11 311 196 HOH HOH . H 3 HOH C 12 312 76 HOH HOH . H 3 HOH C 13 313 119 HOH HOH . H 3 HOH C 14 314 96 HOH HOH . H 3 HOH C 15 315 93 HOH HOH . H 3 HOH C 16 316 236 HOH HOH . H 3 HOH C 17 317 23 HOH HOH . H 3 HOH C 18 318 35 HOH HOH . H 3 HOH C 19 319 43 HOH HOH . H 3 HOH C 20 320 241 HOH HOH . H 3 HOH C 21 321 66 HOH HOH . H 3 HOH C 22 322 53 HOH HOH . H 3 HOH C 23 323 207 HOH HOH . H 3 HOH C 24 324 197 HOH HOH . H 3 HOH C 25 325 182 HOH HOH . H 3 HOH C 26 326 59 HOH HOH . H 3 HOH C 27 327 67 HOH HOH . H 3 HOH C 28 328 211 HOH HOH . H 3 HOH C 29 329 249 HOH HOH . H 3 HOH C 30 330 69 HOH HOH . H 3 HOH C 31 331 113 HOH HOH . H 3 HOH C 32 332 40 HOH HOH . H 3 HOH C 33 333 94 HOH HOH . H 3 HOH C 34 334 183 HOH HOH . H 3 HOH C 35 335 95 HOH HOH . H 3 HOH C 36 336 206 HOH HOH . H 3 HOH C 37 337 51 HOH HOH . H 3 HOH C 38 338 120 HOH HOH . H 3 HOH C 39 339 216 HOH HOH . H 3 HOH C 40 340 188 HOH HOH . H 3 HOH C 41 341 270 HOH HOH . H 3 HOH C 42 342 265 HOH HOH . H 3 HOH C 43 343 164 HOH HOH . H 3 HOH C 44 344 19 HOH HOH . H 3 HOH C 45 345 205 HOH HOH . H 3 HOH C 46 346 36 HOH HOH . H 3 HOH C 47 347 28 HOH HOH . H 3 HOH C 48 348 39 HOH HOH . H 3 HOH C 49 349 149 HOH HOH . H 3 HOH C 50 350 127 HOH HOH . H 3 HOH C 51 351 254 HOH HOH . H 3 HOH C 52 352 142 HOH HOH . H 3 HOH C 53 353 101 HOH HOH . H 3 HOH C 54 354 44 HOH HOH . H 3 HOH C 55 355 65 HOH HOH . H 3 HOH C 56 356 131 HOH HOH . H 3 HOH C 57 357 255 HOH HOH . H 3 HOH C 58 358 105 HOH HOH . H 3 HOH C 59 359 15 HOH HOH . H 3 HOH C 60 360 133 HOH HOH . H 3 HOH C 61 361 228 HOH HOH . H 3 HOH C 62 362 123 HOH HOH . H 3 HOH C 63 363 73 HOH HOH . H 3 HOH C 64 364 264 HOH HOH . H 3 HOH C 65 365 83 HOH HOH . H 3 HOH C 66 366 212 HOH HOH . H 3 HOH C 67 367 225 HOH HOH . H 3 HOH C 68 368 129 HOH HOH . H 3 HOH C 69 369 107 HOH HOH . H 3 HOH C 70 370 90 HOH HOH . H 3 HOH C 71 371 32 HOH HOH . H 3 HOH C 72 372 89 HOH HOH . H 3 HOH C 73 373 179 HOH HOH . H 3 HOH C 74 374 78 HOH HOH . H 3 HOH C 75 375 100 HOH HOH . H 3 HOH C 76 376 85 HOH HOH . H 3 HOH C 77 377 246 HOH HOH . H 3 HOH C 78 378 171 HOH HOH . H 3 HOH C 79 379 232 HOH HOH . H 3 HOH C 80 380 277 HOH HOH . H 3 HOH C 81 381 279 HOH HOH . H 3 HOH C 82 382 280 HOH HOH . H 3 HOH C 83 383 237 HOH HOH . H 3 HOH C 84 384 282 HOH HOH . H 3 HOH C 85 385 189 HOH HOH . H 3 HOH C 86 386 266 HOH HOH . H 3 HOH C 87 387 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 9.536 19.068 -31.109 1 29.02 ? C1 EDO 201 C 1 HETATM 2 O O1 EDO . . . E 2 8.696 19.193 -29.957 1 32.07 ? O1 EDO 201 C 1 HETATM 3 C C2 EDO . . . E 2 10.965 19.492 -30.791 1 30.6 ? C2 EDO 201 C 1 HETATM 4 O O2 EDO . . . E 2 11.627 18.458 -30.044 1 34.19 ? O2 EDO 201 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #