data_5O0V # _model_server_result.job_id PIwE8-3v1SR0YZDDdXmrwg _model_server_result.datetime_utc '2025-01-11 11:56:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5O0V # _exptl.entry_id 5O0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 1.2.1.12 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O0V _cell.length_a 121.384 _cell.length_b 121.384 _cell.length_c 157.004 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 121.384 121.384 157.004 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 121.384 121.384 0 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 157.004 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5O0V _atom_sites.fract_transf_matrix[1][1] 0.008238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 2 GOL A 1 402 402 GOL GOL . D 3 HOH A 1 501 141 HOH HOH . D 3 HOH A 2 502 65 HOH HOH . D 3 HOH A 3 503 59 HOH HOH . D 3 HOH A 4 504 38 HOH HOH . D 3 HOH A 5 505 20 HOH HOH . D 3 HOH A 6 506 113 HOH HOH . D 3 HOH A 7 507 35 HOH HOH . D 3 HOH A 8 508 82 HOH HOH . D 3 HOH A 9 509 24 HOH HOH . D 3 HOH A 10 510 16 HOH HOH . D 3 HOH A 11 511 83 HOH HOH . D 3 HOH A 12 512 47 HOH HOH . D 3 HOH A 13 513 26 HOH HOH . D 3 HOH A 14 514 17 HOH HOH . D 3 HOH A 15 515 11 HOH HOH . D 3 HOH A 16 516 3 HOH HOH . D 3 HOH A 17 517 75 HOH HOH . D 3 HOH A 18 518 15 HOH HOH . D 3 HOH A 19 519 7 HOH HOH . D 3 HOH A 20 520 12 HOH HOH . D 3 HOH A 21 521 85 HOH HOH . D 3 HOH A 22 522 114 HOH HOH . D 3 HOH A 23 523 42 HOH HOH . D 3 HOH A 24 524 1 HOH HOH . D 3 HOH A 25 525 136 HOH HOH . D 3 HOH A 26 526 36 HOH HOH . D 3 HOH A 27 527 18 HOH HOH . D 3 HOH A 28 528 128 HOH HOH . D 3 HOH A 29 529 6 HOH HOH . D 3 HOH A 30 530 37 HOH HOH . D 3 HOH A 31 531 54 HOH HOH . D 3 HOH A 32 532 2 HOH HOH . D 3 HOH A 33 533 63 HOH HOH . D 3 HOH A 34 534 123 HOH HOH . D 3 HOH A 35 535 44 HOH HOH . D 3 HOH A 36 536 66 HOH HOH . D 3 HOH A 37 537 56 HOH HOH . D 3 HOH A 38 538 88 HOH HOH . D 3 HOH A 39 539 84 HOH HOH . D 3 HOH A 40 540 67 HOH HOH . D 3 HOH A 41 541 4 HOH HOH . D 3 HOH A 42 542 13 HOH HOH . D 3 HOH A 43 543 81 HOH HOH . D 3 HOH A 44 544 92 HOH HOH . D 3 HOH A 45 545 27 HOH HOH . D 3 HOH A 46 546 21 HOH HOH . D 3 HOH A 47 547 64 HOH HOH . D 3 HOH A 48 548 131 HOH HOH . D 3 HOH A 49 549 89 HOH HOH . D 3 HOH A 50 550 53 HOH HOH . D 3 HOH A 51 551 135 HOH HOH . D 3 HOH A 52 552 127 HOH HOH . D 3 HOH A 53 553 8 HOH HOH . D 3 HOH A 54 554 73 HOH HOH . D 3 HOH A 55 555 19 HOH HOH . D 3 HOH A 56 556 80 HOH HOH . D 3 HOH A 57 557 29 HOH HOH . D 3 HOH A 58 558 126 HOH HOH . D 3 HOH A 59 559 10 HOH HOH . D 3 HOH A 60 560 72 HOH HOH . D 3 HOH A 61 561 14 HOH HOH . D 3 HOH A 62 562 30 HOH HOH . D 3 HOH A 63 563 97 HOH HOH . D 3 HOH A 64 564 76 HOH HOH . D 3 HOH A 65 565 71 HOH HOH . D 3 HOH A 66 566 48 HOH HOH . D 3 HOH A 67 567 90 HOH HOH . D 3 HOH A 68 568 5 HOH HOH . D 3 HOH A 69 569 58 HOH HOH . D 3 HOH A 70 570 43 HOH HOH . D 3 HOH A 71 571 51 HOH HOH . D 3 HOH A 72 572 60 HOH HOH . D 3 HOH A 73 573 32 HOH HOH . D 3 HOH A 74 574 93 HOH HOH . D 3 HOH A 75 575 133 HOH HOH . D 3 HOH A 76 576 40 HOH HOH . D 3 HOH A 77 577 55 HOH HOH . D 3 HOH A 78 578 31 HOH HOH . D 3 HOH A 79 579 87 HOH HOH . D 3 HOH A 80 580 78 HOH HOH . D 3 HOH A 81 581 52 HOH HOH . D 3 HOH A 82 582 46 HOH HOH . D 3 HOH A 83 583 139 HOH HOH . D 3 HOH A 84 584 120 HOH HOH . D 3 HOH A 85 585 102 HOH HOH . D 3 HOH A 86 586 106 HOH HOH . D 3 HOH A 87 587 45 HOH HOH . D 3 HOH A 88 588 104 HOH HOH . D 3 HOH A 89 589 22 HOH HOH . D 3 HOH A 90 590 94 HOH HOH . D 3 HOH A 91 591 70 HOH HOH . D 3 HOH A 92 592 100 HOH HOH . D 3 HOH A 93 593 74 HOH HOH . D 3 HOH A 94 594 137 HOH HOH . D 3 HOH A 95 595 91 HOH HOH . D 3 HOH A 96 596 49 HOH HOH . D 3 HOH A 97 597 68 HOH HOH . D 3 HOH A 98 598 50 HOH HOH . D 3 HOH A 99 599 107 HOH HOH . D 3 HOH A 100 600 9 HOH HOH . D 3 HOH A 101 601 79 HOH HOH . D 3 HOH A 102 602 33 HOH HOH . D 3 HOH A 103 603 110 HOH HOH . D 3 HOH A 104 604 57 HOH HOH . D 3 HOH A 105 605 77 HOH HOH . D 3 HOH A 106 606 69 HOH HOH . D 3 HOH A 107 607 86 HOH HOH . D 3 HOH A 108 608 99 HOH HOH . D 3 HOH A 109 609 103 HOH HOH . D 3 HOH A 110 610 28 HOH HOH . D 3 HOH A 111 611 115 HOH HOH . D 3 HOH A 112 612 25 HOH HOH . D 3 HOH A 113 613 129 HOH HOH . D 3 HOH A 114 614 62 HOH HOH . D 3 HOH A 115 615 109 HOH HOH . D 3 HOH A 116 616 41 HOH HOH . D 3 HOH A 117 617 111 HOH HOH . D 3 HOH A 118 618 98 HOH HOH . D 3 HOH A 119 619 134 HOH HOH . D 3 HOH A 120 620 122 HOH HOH . D 3 HOH A 121 621 112 HOH HOH . D 3 HOH A 122 622 23 HOH HOH . D 3 HOH A 123 623 34 HOH HOH . D 3 HOH A 124 624 121 HOH HOH . D 3 HOH A 125 625 61 HOH HOH . D 3 HOH A 126 626 117 HOH HOH . D 3 HOH A 127 627 39 HOH HOH . D 3 HOH A 128 628 130 HOH HOH . D 3 HOH A 129 629 124 HOH HOH . D 3 HOH A 130 630 101 HOH HOH . D 3 HOH A 131 631 116 HOH HOH . D 3 HOH A 132 632 108 HOH HOH . D 3 HOH A 133 633 105 HOH HOH . D 3 HOH A 134 634 132 HOH HOH . D 3 HOH A 135 635 95 HOH HOH . D 3 HOH A 136 636 125 HOH HOH . D 3 HOH A 137 637 140 HOH HOH . D 3 HOH A 138 638 118 HOH HOH . D 3 HOH A 139 639 119 HOH HOH . D 3 HOH A 140 640 138 HOH HOH . D 3 HOH A 141 641 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 73.81 50.666 57.513 1 59.13 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 2 73.777 50.116 56.215 1 62.33 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 2 73.678 52.184 57.451 1 57.91 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 2 72.707 52.606 58.385 1 55.81 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 2 75.014 52.864 57.758 1 62.58 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 2 74.758 54.18 58.204 1 62.44 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #