data_5O11 # _model_server_result.job_id Ft4UKwNpJ0iLnXdoKqmjRA _model_server_result.datetime_utc '2024-11-17 18:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5O11 # _exptl.entry_id 5O11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O11 _cell.length_a 96.052 _cell.length_b 96.052 _cell.length_c 80.297 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 145 A ASN 160 1_555 A N CME 146 A CME 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C CME 146 A CME 161 1_555 A N GLY 147 A GLY 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 A C SER 245 A SER 260 1_555 A N SEP 246 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale4 A C SEP 246 A SEP 261 1_555 A N GLU 247 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 190 n n C1 C2 GOL sing 191 n n C1 H11 GOL sing 192 n n C1 H12 GOL sing 193 n n O1 HO1 GOL sing 194 n n C2 O2 GOL sing 195 n n C2 C3 GOL sing 196 n n C2 H2 GOL sing 197 n n O2 HO2 GOL sing 198 n n C3 O3 GOL sing 199 n n C3 H31 GOL sing 200 n n C3 H32 GOL sing 201 n n O3 HO3 GOL sing 202 n n # _atom_sites.entry_id 5O11 _atom_sites.fract_transf_matrix[1][1] 0.010411 _atom_sites.fract_transf_matrix[1][2] 0.006011 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3NG A 1 401 1 3NG cx4 . C 3 IMD A 1 402 1 IMD IMD . D 4 GOL A 1 403 1 GOL GOL . E 4 GOL A 1 404 2 GOL GOL . F 5 CL A 1 405 1 CL CL . G 6 HOH A 1 501 90 HOH HOH . G 6 HOH A 2 502 84 HOH HOH . G 6 HOH A 3 503 22 HOH HOH . G 6 HOH A 4 504 76 HOH HOH . G 6 HOH A 5 505 61 HOH HOH . G 6 HOH A 6 506 57 HOH HOH . G 6 HOH A 7 507 68 HOH HOH . G 6 HOH A 8 508 11 HOH HOH . G 6 HOH A 9 509 71 HOH HOH . G 6 HOH A 10 510 10 HOH HOH . G 6 HOH A 11 511 15 HOH HOH . G 6 HOH A 12 512 60 HOH HOH . G 6 HOH A 13 513 28 HOH HOH . G 6 HOH A 14 514 1 HOH HOH . G 6 HOH A 15 515 72 HOH HOH . G 6 HOH A 16 516 29 HOH HOH . G 6 HOH A 17 517 6 HOH HOH . G 6 HOH A 18 518 35 HOH HOH . G 6 HOH A 19 519 55 HOH HOH . G 6 HOH A 20 520 89 HOH HOH . G 6 HOH A 21 521 17 HOH HOH . G 6 HOH A 22 522 5 HOH HOH . G 6 HOH A 23 523 12 HOH HOH . G 6 HOH A 24 524 51 HOH HOH . G 6 HOH A 25 525 85 HOH HOH . G 6 HOH A 26 526 86 HOH HOH . G 6 HOH A 27 527 34 HOH HOH . G 6 HOH A 28 528 69 HOH HOH . G 6 HOH A 29 529 9 HOH HOH . G 6 HOH A 30 530 41 HOH HOH . G 6 HOH A 31 531 16 HOH HOH . G 6 HOH A 32 532 27 HOH HOH . G 6 HOH A 33 533 50 HOH HOH . G 6 HOH A 34 534 40 HOH HOH . G 6 HOH A 35 535 23 HOH HOH . G 6 HOH A 36 536 77 HOH HOH . G 6 HOH A 37 537 18 HOH HOH . G 6 HOH A 38 538 2 HOH HOH . G 6 HOH A 39 539 19 HOH HOH . G 6 HOH A 40 540 20 HOH HOH . G 6 HOH A 41 541 52 HOH HOH . G 6 HOH A 42 542 70 HOH HOH . G 6 HOH A 43 543 46 HOH HOH . G 6 HOH A 44 544 14 HOH HOH . G 6 HOH A 45 545 58 HOH HOH . G 6 HOH A 46 546 13 HOH HOH . G 6 HOH A 47 547 65 HOH HOH . G 6 HOH A 48 548 94 HOH HOH . G 6 HOH A 49 549 54 HOH HOH . G 6 HOH A 50 550 67 HOH HOH . G 6 HOH A 51 551 30 HOH HOH . G 6 HOH A 52 552 80 HOH HOH . G 6 HOH A 53 553 97 HOH HOH . G 6 HOH A 54 554 53 HOH HOH . G 6 HOH A 55 555 24 HOH HOH . G 6 HOH A 56 556 7 HOH HOH . G 6 HOH A 57 557 39 HOH HOH . G 6 HOH A 58 558 45 HOH HOH . G 6 HOH A 59 559 47 HOH HOH . G 6 HOH A 60 560 48 HOH HOH . G 6 HOH A 61 561 3 HOH HOH . G 6 HOH A 62 562 21 HOH HOH . G 6 HOH A 63 563 49 HOH HOH . G 6 HOH A 64 564 26 HOH HOH . G 6 HOH A 65 565 42 HOH HOH . G 6 HOH A 66 566 43 HOH HOH . G 6 HOH A 67 567 82 HOH HOH . G 6 HOH A 68 568 44 HOH HOH . G 6 HOH A 69 569 37 HOH HOH . G 6 HOH A 70 570 64 HOH HOH . G 6 HOH A 71 571 36 HOH HOH . G 6 HOH A 72 572 87 HOH HOH . G 6 HOH A 73 573 92 HOH HOH . G 6 HOH A 74 574 83 HOH HOH . G 6 HOH A 75 575 8 HOH HOH . G 6 HOH A 76 576 81 HOH HOH . G 6 HOH A 77 577 74 HOH HOH . G 6 HOH A 78 578 38 HOH HOH . G 6 HOH A 79 579 66 HOH HOH . G 6 HOH A 80 580 31 HOH HOH . G 6 HOH A 81 581 93 HOH HOH . G 6 HOH A 82 582 4 HOH HOH . G 6 HOH A 83 583 25 HOH HOH . G 6 HOH A 84 584 56 HOH HOH . G 6 HOH A 85 585 73 HOH HOH . G 6 HOH A 86 586 32 HOH HOH . G 6 HOH A 87 587 88 HOH HOH . G 6 HOH A 88 588 63 HOH HOH . G 6 HOH A 89 589 33 HOH HOH . G 6 HOH A 90 590 75 HOH HOH . G 6 HOH A 91 591 91 HOH HOH . G 6 HOH A 92 592 79 HOH HOH . G 6 HOH A 93 593 95 HOH HOH . G 6 HOH A 94 594 96 HOH HOH . G 6 HOH A 95 595 59 HOH HOH . G 6 HOH A 96 596 78 HOH HOH . G 6 HOH A 97 597 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 23.436 132.503 8.07 1 69.41 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 4 22.933 133.563 7.222 1 57.97 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 4 24.729 132.935 8.812 1 72.76 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 4 24.522 133.387 10.171 1 64.77 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 4 25.767 131.807 8.888 1 73.51 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 4 26.68 132.02 9.983 1 71.71 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #