data_5O12 # _model_server_result.job_id hyY-L4_W7H5X9z8xZJb8vQ _model_server_result.datetime_utc '2024-11-14 09:15:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5O12 # _exptl.entry_id 5O12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5E)-5-(quinolin-6-ylmethylidene)-2-[(thiophen-2-ylmethyl)amino]-1,3-thiazol-4(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O12 _cell.length_a 97.672 _cell.length_b 97.672 _cell.length_c 80.579 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 145 A ASN 160 1_555 A N CME 146 A CME 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CME 146 A CME 161 1_555 A N GLY 147 A GLY 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C SER 245 A SER 260 1_555 A N SEP 246 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale4 A C SEP 246 A SEP 261 1_555 A N GLU 247 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'C18 H13 N3 O S2' _chem_comp.formula_weight 351.445 _chem_comp.id 1RO _chem_comp.mon_nstd_flag . _chem_comp.name (5E)-5-(quinolin-6-ylmethylidene)-2-[(thiophen-2-ylmethyl)amino]-1,3-thiazol-4(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S2 C21 1RO sing 1 n y S2 C19 1RO sing 2 n y C18 C19 1RO sing 3 n n C18 N3 1RO sing 4 n n C21 C22 1RO doub 5 n y C19 C23 1RO doub 6 n y N3 C15 1RO sing 7 n n C22 C23 1RO sing 8 n y C15 N2 1RO doub 9 n n C15 S1 1RO sing 10 n n N2 C13 1RO sing 11 n n S1 C12 1RO sing 12 n n C13 C12 1RO sing 13 n n C13 O1 1RO doub 14 n n C12 C11 1RO doub 15 e n C11 C1 1RO sing 16 n n C2 C1 1RO doub 17 n y C2 C3 1RO sing 18 n y C7 C3 1RO doub 19 n y C7 C8 1RO sing 20 n y C1 C6 1RO sing 21 n y C3 C4 1RO sing 22 n y C8 C9 1RO doub 23 n y C6 C5 1RO doub 24 n y C4 C5 1RO sing 25 n y C4 N1 1RO doub 26 n y C9 N1 1RO sing 27 n y N3 H1 1RO sing 28 n n C18 H2 1RO sing 29 n n C18 H3 1RO sing 30 n n C23 H4 1RO sing 31 n n C22 H5 1RO sing 32 n n C21 H6 1RO sing 33 n n C11 H7 1RO sing 34 n n C6 H8 1RO sing 35 n n C5 H9 1RO sing 36 n n C9 H10 1RO sing 37 n n C8 H11 1RO sing 38 n n C7 H12 1RO sing 39 n n C2 H13 1RO sing 40 n n # _atom_sites.entry_id 5O12 _atom_sites.fract_transf_matrix[1][1] 0.010238 _atom_sites.fract_transf_matrix[1][2] 0.005911 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1RO A 1 401 1 1RO ro3 . C 3 IMD A 1 402 1 IMD IMD . D 4 HOH A 1 501 24 HOH HOH . D 4 HOH A 2 502 45 HOH HOH . D 4 HOH A 3 503 41 HOH HOH . D 4 HOH A 4 504 47 HOH HOH . D 4 HOH A 5 505 46 HOH HOH . D 4 HOH A 6 506 12 HOH HOH . D 4 HOH A 7 507 29 HOH HOH . D 4 HOH A 8 508 27 HOH HOH . D 4 HOH A 9 509 15 HOH HOH . D 4 HOH A 10 510 40 HOH HOH . D 4 HOH A 11 511 38 HOH HOH . D 4 HOH A 12 512 53 HOH HOH . D 4 HOH A 13 513 22 HOH HOH . D 4 HOH A 14 514 44 HOH HOH . D 4 HOH A 15 515 34 HOH HOH . D 4 HOH A 16 516 10 HOH HOH . D 4 HOH A 17 517 7 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 42 HOH HOH . D 4 HOH A 20 520 35 HOH HOH . D 4 HOH A 21 521 13 HOH HOH . D 4 HOH A 22 522 19 HOH HOH . D 4 HOH A 23 523 20 HOH HOH . D 4 HOH A 24 524 23 HOH HOH . D 4 HOH A 25 525 28 HOH HOH . D 4 HOH A 26 526 17 HOH HOH . D 4 HOH A 27 527 48 HOH HOH . D 4 HOH A 28 528 4 HOH HOH . D 4 HOH A 29 529 8 HOH HOH . D 4 HOH A 30 530 32 HOH HOH . D 4 HOH A 31 531 36 HOH HOH . D 4 HOH A 32 532 2 HOH HOH . D 4 HOH A 33 533 21 HOH HOH . D 4 HOH A 34 534 9 HOH HOH . D 4 HOH A 35 535 52 HOH HOH . D 4 HOH A 36 536 18 HOH HOH . D 4 HOH A 37 537 11 HOH HOH . D 4 HOH A 38 538 5 HOH HOH . D 4 HOH A 39 539 31 HOH HOH . D 4 HOH A 40 540 51 HOH HOH . D 4 HOH A 41 541 25 HOH HOH . D 4 HOH A 42 542 3 HOH HOH . D 4 HOH A 43 543 50 HOH HOH . D 4 HOH A 44 544 30 HOH HOH . D 4 HOH A 45 545 1 HOH HOH . D 4 HOH A 46 546 39 HOH HOH . D 4 HOH A 47 547 49 HOH HOH . D 4 HOH A 48 548 26 HOH HOH . D 4 HOH A 49 549 16 HOH HOH . D 4 HOH A 50 550 33 HOH HOH . D 4 HOH A 51 551 37 HOH HOH . D 4 HOH A 52 552 43 HOH HOH . D 4 HOH A 53 553 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 1RO . . . B 2 70.639 53.378 -3.674 0.8 37.32 ? O1 1RO 401 A 1 HETATM 2 C C13 1RO . . . B 2 70.369 53.194 -2.474 0.8 37.54 ? C13 1RO 401 A 1 HETATM 3 N N2 1RO . . . B 2 69.797 54.1 -1.657 0.8 43.17 ? N2 1RO 401 A 1 HETATM 4 C C15 1RO . . . B 2 69.663 53.558 -0.405 0.8 42.99 ? C15 1RO 401 A 1 HETATM 5 N N3 1RO . . . B 2 69.103 54.168 0.654 0.8 48.51 ? N3 1RO 401 A 1 HETATM 6 C C18 1RO . . . B 2 68.428 55.456 0.561 0.8 49.54 ? C18 1RO 401 A 1 HETATM 7 C C19 1RO . . . B 2 67.056 55.242 -0.005 0.8 51.7 ? C19 1RO 401 A 1 HETATM 8 C C23 1RO . . . B 2 66.256 54.132 -0.147 0.8 46.22 ? C23 1RO 401 A 1 HETATM 9 C C22 1RO . . . B 2 65.007 54.406 -0.75 0.8 55.9 ? C22 1RO 401 A 1 HETATM 10 C C21 1RO . . . B 2 64.825 55.749 -1.095 0.8 53.96 ? C21 1RO 401 A 1 HETATM 11 S S2 1RO . . . B 2 66.249 56.625 -0.645 0.8 66.65 ? S2 1RO 401 A 1 HETATM 12 S S1 1RO . . . B 2 70.212 51.933 -0.263 0.8 52.57 ? S1 1RO 401 A 1 HETATM 13 C C12 1RO . . . B 2 70.659 51.877 -1.954 0.8 44.68 ? C12 1RO 401 A 1 HETATM 14 C C11 1RO . . . B 2 71.256 50.842 -2.795 0.8 44.93 ? C11 1RO 401 A 1 HETATM 15 C C1 1RO . . . B 2 71.581 49.498 -2.357 0.8 44.27 ? C1 1RO 401 A 1 HETATM 16 C C6 1RO . . . B 2 71.974 48.625 -3.351 0.8 42 ? C6 1RO 401 A 1 HETATM 17 C C5 1RO . . . B 2 72.314 47.338 -3.046 0.8 45.49 ? C5 1RO 401 A 1 HETATM 18 C C4 1RO . . . B 2 72.258 46.91 -1.738 0.8 47.39 ? C4 1RO 401 A 1 HETATM 19 N N1 1RO . . . B 2 72.585 45.626 -1.385 0.8 54.42 ? N1 1RO 401 A 1 HETATM 20 C C9 1RO . . . B 2 72.548 45.222 -0.081 0.8 52.74 ? C9 1RO 401 A 1 HETATM 21 C C8 1RO . . . B 2 72.168 46.088 0.955 0.8 51.55 ? C8 1RO 401 A 1 HETATM 22 C C7 1RO . . . B 2 71.809 47.421 0.654 0.8 55.38 ? C7 1RO 401 A 1 HETATM 23 C C3 1RO . . . B 2 71.832 47.855 -0.685 0.8 49.16 ? C3 1RO 401 A 1 HETATM 24 C C2 1RO . . . B 2 71.506 49.139 -1.039 0.8 46.46 ? C2 1RO 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #