data_5O12 # _model_server_result.job_id wTRVYUZ-eHjIwYSZ2e7ZEg _model_server_result.datetime_utc '2024-11-14 09:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5O12 # _exptl.entry_id 5O12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O12 _cell.length_a 97.672 _cell.length_b 97.672 _cell.length_c 80.579 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 145 A ASN 160 1_555 A N CME 146 A CME 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CME 146 A CME 161 1_555 A N GLY 147 A GLY 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C SER 245 A SER 260 1_555 A N SEP 246 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale4 A C SEP 246 A SEP 261 1_555 A N GLU 247 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 234 n y N1 C5 IMD sing 235 n y N1 HN1 IMD sing 236 n n C2 N3 IMD doub 237 n y C2 H2 IMD sing 238 n n N3 C4 IMD sing 239 n y N3 HN3 IMD sing 240 n n C4 C5 IMD doub 241 n y C4 H4 IMD sing 242 n n C5 H5 IMD sing 243 n n # _atom_sites.entry_id 5O12 _atom_sites.fract_transf_matrix[1][1] 0.010238 _atom_sites.fract_transf_matrix[1][2] 0.005911 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1RO A 1 401 1 1RO ro3 . C 3 IMD A 1 402 1 IMD IMD . D 4 HOH A 1 501 24 HOH HOH . D 4 HOH A 2 502 45 HOH HOH . D 4 HOH A 3 503 41 HOH HOH . D 4 HOH A 4 504 47 HOH HOH . D 4 HOH A 5 505 46 HOH HOH . D 4 HOH A 6 506 12 HOH HOH . D 4 HOH A 7 507 29 HOH HOH . D 4 HOH A 8 508 27 HOH HOH . D 4 HOH A 9 509 15 HOH HOH . D 4 HOH A 10 510 40 HOH HOH . D 4 HOH A 11 511 38 HOH HOH . D 4 HOH A 12 512 53 HOH HOH . D 4 HOH A 13 513 22 HOH HOH . D 4 HOH A 14 514 44 HOH HOH . D 4 HOH A 15 515 34 HOH HOH . D 4 HOH A 16 516 10 HOH HOH . D 4 HOH A 17 517 7 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 42 HOH HOH . D 4 HOH A 20 520 35 HOH HOH . D 4 HOH A 21 521 13 HOH HOH . D 4 HOH A 22 522 19 HOH HOH . D 4 HOH A 23 523 20 HOH HOH . D 4 HOH A 24 524 23 HOH HOH . D 4 HOH A 25 525 28 HOH HOH . D 4 HOH A 26 526 17 HOH HOH . D 4 HOH A 27 527 48 HOH HOH . D 4 HOH A 28 528 4 HOH HOH . D 4 HOH A 29 529 8 HOH HOH . D 4 HOH A 30 530 32 HOH HOH . D 4 HOH A 31 531 36 HOH HOH . D 4 HOH A 32 532 2 HOH HOH . D 4 HOH A 33 533 21 HOH HOH . D 4 HOH A 34 534 9 HOH HOH . D 4 HOH A 35 535 52 HOH HOH . D 4 HOH A 36 536 18 HOH HOH . D 4 HOH A 37 537 11 HOH HOH . D 4 HOH A 38 538 5 HOH HOH . D 4 HOH A 39 539 31 HOH HOH . D 4 HOH A 40 540 51 HOH HOH . D 4 HOH A 41 541 25 HOH HOH . D 4 HOH A 42 542 3 HOH HOH . D 4 HOH A 43 543 50 HOH HOH . D 4 HOH A 44 544 30 HOH HOH . D 4 HOH A 45 545 1 HOH HOH . D 4 HOH A 46 546 39 HOH HOH . D 4 HOH A 47 547 49 HOH HOH . D 4 HOH A 48 548 26 HOH HOH . D 4 HOH A 49 549 16 HOH HOH . D 4 HOH A 50 550 33 HOH HOH . D 4 HOH A 51 551 37 HOH HOH . D 4 HOH A 52 552 43 HOH HOH . D 4 HOH A 53 553 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 72.621 52.629 8.542 1 91.04 ? N1 IMD 402 A 1 HETATM 2 C C2 IMD . . . C 3 73.349 51.546 8.167 1 83.12 ? C2 IMD 402 A 1 HETATM 3 N N3 IMD . . . C 3 72.497 50.685 7.56 1 89.5 ? N3 IMD 402 A 1 HETATM 4 C C4 IMD . . . C 3 71.238 51.207 7.553 1 85.68 ? C4 IMD 402 A 1 HETATM 5 C C5 IMD . . . C 3 71.319 52.432 8.178 1 88.64 ? C5 IMD 402 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #