data_5O13
#
_model_server_result.job_id            WpbSgIpQYfasB759Fy3s4A 
_model_server_result.datetime_utc      '2025-08-24 00:31:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o13 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5O13 
#
_exptl.entry_id    5O13 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              461.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3~{E})-5-chloranyl-3-[[5-[3-[(4-methyl-1,4-diazepan-1-yl)carbonyl]phenyl]furan-2-yl]methylidene]-1~{H}-indol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5O13 
_cell.length_a            96.735 
_cell.length_b            96.735 
_cell.length_c            81.765 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O13 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 145 A ASN 160 1_555 A N CSX 146 A CSX 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C CSX 146 A CSX 161 1_555 A N GLY 147 A GLY 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 A C SER 245 A SER 260 1_555 A N SEP 246 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale4 A C SEP 246 A SEP 261 1_555 A N GLU 247 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C26 H24 Cl N3 O3' 
_chem_comp.formula_weight    461.94 
_chem_comp.id                9G5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3~{E})-5-chloranyl-3-[[5-[3-[(4-methyl-1,4-diazepan-1-yl)carbonyl]phenyl]furan-2-yl]methylidene]-1~{H}-indol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N 9G5 sing 1 n n 
C1 N 9G5 sing 2 n n 
C1 C2 9G5 sing 3 n n 
N C5 9G5 sing 4 n n 
C2 C3 9G5 sing 5 n n 
C5 C4 9G5 sing 6 n n 
C3 N1 9G5 sing 7 n n 
C4 N1 9G5 sing 8 n n 
N1 C6 9G5 sing 9 n n 
O C6 9G5 doub 10 n n 
C6 C7 9G5 sing 11 n n 
C7 C12 9G5 doub 12 n y 
C7 C8 9G5 sing 13 n y 
C12 C11 9G5 sing 14 n y 
C8 C9 9G5 doub 15 n y 
C14 C15 9G5 sing 16 n y 
C14 C13 9G5 doub 17 n y 
C11 C13 9G5 sing 18 n n 
C11 C10 9G5 doub 19 n y 
C15 C16 9G5 doub 20 n y 
C13 O1 9G5 sing 21 n y 
C9 C10 9G5 sing 22 n y 
C16 O1 9G5 sing 23 n y 
C16 C17 9G5 sing 24 n n 
C17 C18 9G5 doub 25 e n 
C18 C19 9G5 sing 26 n n 
C18 C25 9G5 sing 27 n n 
C24 C19 9G5 doub 28 n y 
C24 C23 9G5 sing 29 n y 
C19 C20 9G5 sing 30 n y 
O2 C25 9G5 doub 31 n n 
CL C23 9G5 sing 32 n n 
C25 N2 9G5 sing 33 n n 
C23 C22 9G5 doub 34 n y 
C20 N2 9G5 sing 35 n n 
C20 C21 9G5 doub 36 n y 
C22 C21 9G5 sing 37 n y 
C4 H1 9G5 sing 38 n n 
C4 H2 9G5 sing 39 n n 
C5 H3 9G5 sing 40 n n 
C5 H4 9G5 sing 41 n n 
C8 H5 9G5 sing 42 n n 
C10 H6 9G5 sing 43 n n 
C15 H7 9G5 sing 44 n n 
C17 H8 9G5 sing 45 n n 
C21 H9 9G5 sing 46 n n 
C22 H10 9G5 sing 47 n n 
C24 H11 9G5 sing 48 n n 
N2 H12 9G5 sing 49 n n 
C14 H13 9G5 sing 50 n n 
C9 H14 9G5 sing 51 n n 
C12 H15 9G5 sing 52 n n 
C3 H16 9G5 sing 53 n n 
C3 H17 9G5 sing 54 n n 
C2 H18 9G5 sing 55 n n 
C2 H19 9G5 sing 56 n n 
C1 H20 9G5 sing 57 n n 
C1 H21 9G5 sing 58 n n 
C H23 9G5 sing 59 n n 
C H24 9G5 sing 60 n n 
C H25 9G5 sing 61 n n 
#
_atom_sites.entry_id                     5O13 
_atom_sites.fract_transf_matrix[1][1]    0.010337 
_atom_sites.fract_transf_matrix[1][2]    0.005968 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01223 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9G5 A 1 401 1 9G5 LIG . 
C 3 IMD A 1 402 1 IMD IMD . 
D 4 CL A 1 403 1 CL CL . 
E 5 HOH A 1 501 86 HOH HOH . 
E 5 HOH A 2 502 22 HOH HOH . 
E 5 HOH A 3 503 41 HOH HOH . 
E 5 HOH A 4 504 28 HOH HOH . 
E 5 HOH A 5 505 42 HOH HOH . 
E 5 HOH A 6 506 55 HOH HOH . 
E 5 HOH A 7 507 47 HOH HOH . 
E 5 HOH A 8 508 36 HOH HOH . 
E 5 HOH A 9 509 17 HOH HOH . 
E 5 HOH A 10 510 12 HOH HOH . 
E 5 HOH A 11 511 71 HOH HOH . 
E 5 HOH A 12 512 27 HOH HOH . 
E 5 HOH A 13 513 83 HOH HOH . 
E 5 HOH A 14 514 4 HOH HOH . 
E 5 HOH A 15 515 3 HOH HOH . 
E 5 HOH A 16 516 63 HOH HOH . 
E 5 HOH A 17 517 21 HOH HOH . 
E 5 HOH A 18 518 82 HOH HOH . 
E 5 HOH A 19 519 32 HOH HOH . 
E 5 HOH A 20 520 20 HOH HOH . 
E 5 HOH A 21 521 2 HOH HOH . 
E 5 HOH A 22 522 37 HOH HOH . 
E 5 HOH A 23 523 54 HOH HOH . 
E 5 HOH A 24 524 9 HOH HOH . 
E 5 HOH A 25 525 44 HOH HOH . 
E 5 HOH A 26 526 62 HOH HOH . 
E 5 HOH A 27 527 46 HOH HOH . 
E 5 HOH A 28 528 49 HOH HOH . 
E 5 HOH A 29 529 77 HOH HOH . 
E 5 HOH A 30 530 26 HOH HOH . 
E 5 HOH A 31 531 60 HOH HOH . 
E 5 HOH A 32 532 16 HOH HOH . 
E 5 HOH A 33 533 59 HOH HOH . 
E 5 HOH A 34 534 11 HOH HOH . 
E 5 HOH A 35 535 35 HOH HOH . 
E 5 HOH A 36 536 45 HOH HOH . 
E 5 HOH A 37 537 56 HOH HOH . 
E 5 HOH A 38 538 48 HOH HOH . 
E 5 HOH A 39 539 58 HOH HOH . 
E 5 HOH A 40 540 43 HOH HOH . 
E 5 HOH A 41 541 93 HOH HOH . 
E 5 HOH A 42 542 6 HOH HOH . 
E 5 HOH A 43 543 85 HOH HOH . 
E 5 HOH A 44 544 10 HOH HOH . 
E 5 HOH A 45 545 33 HOH HOH . 
E 5 HOH A 46 546 7 HOH HOH . 
E 5 HOH A 47 547 29 HOH HOH . 
E 5 HOH A 48 548 1 HOH HOH . 
E 5 HOH A 49 549 70 HOH HOH . 
E 5 HOH A 50 550 50 HOH HOH . 
E 5 HOH A 51 551 13 HOH HOH . 
E 5 HOH A 52 552 24 HOH HOH . 
E 5 HOH A 53 553 52 HOH HOH . 
E 5 HOH A 54 554 61 HOH HOH . 
E 5 HOH A 55 555 73 HOH HOH . 
E 5 HOH A 56 556 8 HOH HOH . 
E 5 HOH A 57 557 75 HOH HOH . 
E 5 HOH A 58 558 81 HOH HOH . 
E 5 HOH A 59 559 79 HOH HOH . 
E 5 HOH A 60 560 53 HOH HOH . 
E 5 HOH A 61 561 57 HOH HOH . 
E 5 HOH A 62 562 40 HOH HOH . 
E 5 HOH A 63 563 76 HOH HOH . 
E 5 HOH A 64 564 19 HOH HOH . 
E 5 HOH A 65 565 78 HOH HOH . 
E 5 HOH A 66 566 14 HOH HOH . 
E 5 HOH A 67 567 25 HOH HOH . 
E 5 HOH A 68 568 91 HOH HOH . 
E 5 HOH A 69 569 74 HOH HOH . 
E 5 HOH A 70 570 89 HOH HOH . 
E 5 HOH A 71 571 38 HOH HOH . 
E 5 HOH A 72 572 51 HOH HOH . 
E 5 HOH A 73 573 64 HOH HOH . 
E 5 HOH A 74 574 23 HOH HOH . 
E 5 HOH A 75 575 92 HOH HOH . 
E 5 HOH A 76 576 80 HOH HOH . 
E 5 HOH A 77 577 65 HOH HOH . 
E 5 HOH A 78 578 87 HOH HOH . 
E 5 HOH A 79 579 84 HOH HOH . 
E 5 HOH A 80 580 90 HOH HOH . 
E 5 HOH A 81 581 88 HOH HOH . 
E 5 HOH A 82 582 34 HOH HOH . 
E 5 HOH A 83 583 66 HOH HOH . 
E 5 HOH A 84 584 39 HOH HOH . 
E 5 HOH A 85 585 15 HOH HOH . 
E 5 HOH A 86 586 67 HOH HOH . 
E 5 HOH A 87 587 5 HOH HOH . 
E 5 HOH A 88 588 68 HOH HOH . 
E 5 HOH A 89 589 69 HOH HOH . 
E 5 HOH A 90 590 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 9G5 . . . B 2 -72.044 44.304 -10.074 0.8 95.86 ? N1 9G5 401 A 1 
HETATM 2 C C4 9G5 . . . B 2 -70.768 44.888 -10.487 0.8 90.3 ? C4 9G5 401 A 1 
HETATM 3 C C5 9G5 . . . B 2 -71.143 45.954 -11.529 0.8 84.74 ? C5 9G5 401 A 1 
HETATM 4 C C6 9G5 . . . B 2 -72.851 44.855 -9.132 0.8 98.4 ? C6 9G5 401 A 1 
HETATM 5 C C7 9G5 . . . B 2 -72.439 45.106 -7.691 1 81.41 ? C7 9G5 401 A 1 
HETATM 6 C C8 9G5 . . . B 2 -72.803 44.223 -6.684 1 81.25 ? C8 9G5 401 A 1 
HETATM 7 C C10 9G5 . . . B 2 -71.768 45.647 -5.018 1 68.02 ? C10 9G5 401 A 1 
HETATM 8 C C13 9G5 . . . B 2 -70.657 47.724 -5.685 1 60.24 ? C13 9G5 401 A 1 
HETATM 9 C C15 9G5 . . . B 2 -69.468 49.615 -5.859 1 57.04 ? C15 9G5 401 A 1 
HETATM 10 C C17 9G5 . . . B 2 -69.646 50.313 -3.456 1 48.14 ? C17 9G5 401 A 1 
HETATM 11 C C20 9G5 . . . B 2 -70.534 49.32 0.065 1 36.39 ? C20 9G5 401 A 1 
HETATM 12 C C21 9G5 . . . B 2 -70.987 48.41 0.988 1 38.91 ? C21 9G5 401 A 1 
HETATM 13 C C22 9G5 . . . B 2 -71.363 47.125 0.633 1 40.31 ? C22 9G5 401 A 1 
HETATM 14 C C24 9G5 . . . B 2 -70.799 47.585 -1.639 1 36.81 ? C24 9G5 401 A 1 
HETATM 15 O O2 9G5 . . . B 2 -69.371 52.279 -1.25 1 53.72 ? O2 9G5 401 A 1 
HETATM 16 C C25 9G5 . . . B 2 -69.784 51.073 -1.017 1 39.84 ? C25 9G5 401 A 1 
HETATM 17 N N2 9G5 . . . B 2 -70.147 50.618 0.189 1 44.17 ? N2 9G5 401 A 1 
HETATM 18 C C23 9G5 . . . B 2 -71.231 46.736 -0.664 1 38.13 ? C23 9G5 401 A 1 
HETATM 19 CL CL 9G5 . . . B 2 -71.729 45.091 -1.079 1 55.77 ? CL 9G5 401 A 1 
HETATM 20 C C19 9G5 . . . B 2 -70.456 48.893 -1.321 1 36.73 ? C19 9G5 401 A 1 
HETATM 21 C C18 9G5 . . . B 2 -69.924 50.075 -2.026 1 36.7 ? C18 9G5 401 A 1 
HETATM 22 C C16 9G5 . . . B 2 -69.846 49.365 -4.562 1 51.34 ? C16 9G5 401 A 1 
HETATM 23 C C14 9G5 . . . B 2 -69.921 48.518 -6.562 1 54.23 ? C14 9G5 401 A 1 
HETATM 24 O O1 9G5 . . . B 2 -70.652 48.296 -4.436 1 55.6 ? O1 9G5 401 A 1 
HETATM 25 C C11 9G5 . . . B 2 -71.384 46.494 -6.021 1 61.92 ? C11 9G5 401 A 1 
HETATM 26 C C9 9G5 . . . B 2 -72.451 44.493 -5.36 1 82.69 ? C9 9G5 401 A 1 
HETATM 27 C C12 9G5 . . . B 2 -71.752 46.262 -7.342 1 70.99 ? C12 9G5 401 A 1 
HETATM 28 O O 9G5 . . . B 2 -73.997 45.232 -9.432 0.8 85.65 ? O 9G5 401 A 1 
HETATM 29 C C3 9G5 . . . B 2 -72.426 43.145 -10.861 0.8 90.41 ? C3 9G5 401 A 1 
HETATM 30 C C2 9G5 . . . B 2 -72.91 43.751 -12.184 0.8 87.96 ? C2 9G5 401 A 1 
HETATM 31 C C1 9G5 . . . B 2 -71.759 44.111 -13.136 0.8 86.9 ? C1 9G5 401 A 1 
HETATM 32 N N 9G5 . . . B 2 -71.09 45.429 -12.911 0.8 83.9 ? N 9G5 401 A 1 
HETATM 33 C C 9G5 . . . B 2 -71.539 46.461 -13.876 0.8 75.45 ? C 9G5 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#