data_5O17 # _model_server_result.job_id dkUd7IBW7Zi9AtEEpNyRaA _model_server_result.datetime_utc '2024-11-01 08:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5O17 # _exptl.entry_id 5O17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O17 _cell.length_a 88.01 _cell.length_b 88.01 _cell.length_c 113.49 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5O17 _atom_sites.fract_transf_matrix[1][1] 0.011362 _atom_sites.fract_transf_matrix[1][2] 0.00656 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 SO4 A 1 202 202 SO4 SO4 . D 4 KR A 1 204 204 KR KR . E 4 KR A 1 205 205 KR KR . F 4 KR A 1 206 206 KR KR . G 4 KR A 1 210 210 KR KR . H 5 HOH A 1 301 421 HOH HOH . H 5 HOH A 2 302 422 HOH HOH . H 5 HOH A 3 303 423 HOH HOH . H 5 HOH A 4 304 329 HOH HOH . H 5 HOH A 5 305 427 HOH HOH . H 5 HOH A 6 306 426 HOH HOH . H 5 HOH A 7 307 391 HOH HOH . H 5 HOH A 8 308 340 HOH HOH . H 5 HOH A 9 309 425 HOH HOH . H 5 HOH A 10 310 390 HOH HOH . H 5 HOH A 11 311 416 HOH HOH . H 5 HOH A 12 312 358 HOH HOH . H 5 HOH A 13 313 315 HOH HOH . H 5 HOH A 14 314 330 HOH HOH . H 5 HOH A 15 315 321 HOH HOH . H 5 HOH A 16 316 344 HOH HOH . H 5 HOH A 17 317 398 HOH HOH . H 5 HOH A 18 318 392 HOH HOH . H 5 HOH A 19 319 387 HOH HOH . H 5 HOH A 20 320 312 HOH HOH . H 5 HOH A 21 321 339 HOH HOH . H 5 HOH A 22 322 353 HOH HOH . H 5 HOH A 23 323 368 HOH HOH . H 5 HOH A 24 324 331 HOH HOH . H 5 HOH A 25 325 313 HOH HOH . H 5 HOH A 26 326 349 HOH HOH . H 5 HOH A 27 327 303 HOH HOH . H 5 HOH A 28 328 346 HOH HOH . H 5 HOH A 29 329 364 HOH HOH . H 5 HOH A 30 330 332 HOH HOH . H 5 HOH A 31 331 394 HOH HOH . H 5 HOH A 32 332 366 HOH HOH . H 5 HOH A 33 333 314 HOH HOH . H 5 HOH A 34 334 327 HOH HOH . H 5 HOH A 35 335 342 HOH HOH . H 5 HOH A 36 336 371 HOH HOH . H 5 HOH A 37 337 301 HOH HOH . H 5 HOH A 38 338 302 HOH HOH . H 5 HOH A 39 339 414 HOH HOH . H 5 HOH A 40 340 309 HOH HOH . H 5 HOH A 41 341 399 HOH HOH . H 5 HOH A 42 342 404 HOH HOH . H 5 HOH A 43 343 305 HOH HOH . H 5 HOH A 44 344 355 HOH HOH . H 5 HOH A 45 345 361 HOH HOH . H 5 HOH A 46 346 320 HOH HOH . H 5 HOH A 47 347 311 HOH HOH . H 5 HOH A 48 348 317 HOH HOH . H 5 HOH A 49 349 322 HOH HOH . H 5 HOH A 50 350 377 HOH HOH . H 5 HOH A 51 351 337 HOH HOH . H 5 HOH A 52 352 395 HOH HOH . H 5 HOH A 53 353 372 HOH HOH . H 5 HOH A 54 354 389 HOH HOH . H 5 HOH A 55 355 345 HOH HOH . H 5 HOH A 56 356 307 HOH HOH . H 5 HOH A 57 357 341 HOH HOH . H 5 HOH A 58 358 338 HOH HOH . H 5 HOH A 59 359 367 HOH HOH . H 5 HOH A 60 360 396 HOH HOH . H 5 HOH A 61 361 357 HOH HOH . H 5 HOH A 62 362 304 HOH HOH . H 5 HOH A 63 363 415 HOH HOH . H 5 HOH A 64 364 310 HOH HOH . H 5 HOH A 65 365 308 HOH HOH . H 5 HOH A 66 366 375 HOH HOH . H 5 HOH A 67 367 326 HOH HOH . H 5 HOH A 68 368 400 HOH HOH . H 5 HOH A 69 369 418 HOH HOH . H 5 HOH A 70 370 306 HOH HOH . H 5 HOH A 71 371 348 HOH HOH . H 5 HOH A 72 372 393 HOH HOH . H 5 HOH A 73 373 316 HOH HOH . H 5 HOH A 74 374 359 HOH HOH . H 5 HOH A 75 375 318 HOH HOH . H 5 HOH A 76 376 397 HOH HOH . H 5 HOH A 77 377 370 HOH HOH . H 5 HOH A 78 378 324 HOH HOH . H 5 HOH A 79 379 380 HOH HOH . H 5 HOH A 80 380 333 HOH HOH . H 5 HOH A 81 381 401 HOH HOH . H 5 HOH A 82 382 325 HOH HOH . H 5 HOH A 83 383 408 HOH HOH . H 5 HOH A 84 384 405 HOH HOH . H 5 HOH A 85 385 419 HOH HOH . H 5 HOH A 86 386 352 HOH HOH . H 5 HOH A 87 387 350 HOH HOH . H 5 HOH A 88 388 374 HOH HOH . H 5 HOH A 89 389 328 HOH HOH . H 5 HOH A 90 390 354 HOH HOH . H 5 HOH A 91 391 385 HOH HOH . H 5 HOH A 92 392 417 HOH HOH . H 5 HOH A 93 393 410 HOH HOH . H 5 HOH A 94 394 388 HOH HOH . H 5 HOH A 95 395 382 HOH HOH . H 5 HOH A 96 396 428 HOH HOH . H 5 HOH A 97 397 365 HOH HOH . H 5 HOH A 98 398 378 HOH HOH . H 5 HOH A 99 399 363 HOH HOH . H 5 HOH A 100 400 343 HOH HOH . H 5 HOH A 101 401 412 HOH HOH . H 5 HOH A 102 402 409 HOH HOH . H 5 HOH A 103 403 373 HOH HOH . H 5 HOH A 104 404 335 HOH HOH . H 5 HOH A 105 405 411 HOH HOH . H 5 HOH A 106 406 319 HOH HOH . H 5 HOH A 107 407 379 HOH HOH . H 5 HOH A 108 408 381 HOH HOH . H 5 HOH A 109 409 424 HOH HOH . H 5 HOH A 110 410 386 HOH HOH . H 5 HOH A 111 411 403 HOH HOH . H 5 HOH A 112 412 402 HOH HOH . H 5 HOH A 113 413 351 HOH HOH . H 5 HOH A 114 414 347 HOH HOH . H 5 HOH A 115 415 406 HOH HOH . H 5 HOH A 116 416 407 HOH HOH . H 5 HOH A 117 417 420 HOH HOH . H 5 HOH A 118 418 323 HOH HOH . H 5 HOH A 119 419 334 HOH HOH . H 5 HOH A 120 420 360 HOH HOH . H 5 HOH A 121 421 383 HOH HOH . H 5 HOH A 122 422 362 HOH HOH . H 5 HOH A 123 423 413 HOH HOH . H 5 HOH A 124 424 376 HOH HOH . H 5 HOH A 125 425 369 HOH HOH . H 5 HOH A 126 426 384 HOH HOH . H 5 HOH A 127 427 356 HOH HOH . H 5 HOH A 128 428 336 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 19.446 58.149 36.221 1 14.02 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 14.979 57.325 34.451 1 13.99 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 15.642 52.611 35.306 1 14.99 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 20.297 53.423 36.369 1 14.74 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 18.177 58.314 35.723 1 14.14 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 17.629 59.554 35.384 1 15.57 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 16.39 59.332 34.875 1 15.33 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 16.166 57.964 34.876 1 14.69 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 15.433 60.396 34.408 1 16.91 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 18.227 60.94 35.544 1 16.74 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 18.772 61.438 34.218 1 16.11 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 19.903 60.6 33.686 1 19.2 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 20.979 60.392 34.368 1 17.22 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 19.847 60.132 32.519 1 17.4 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 14.78 55.971 34.557 1 14.23 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 13.504 55.311 34.248 1 13.76 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 13.676 53.976 34.517 1 14.41 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 15.069 53.832 34.989 1 14.48 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 12.252 56.018 33.798 1 15.75 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 12.787 52.78 34.454 1 15.6 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 11.511 52.858 34.497 1 20.71 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 16.942 52.396 35.662 1 15.41 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 17.497 51.146 35.971 1 17.65 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 18.845 51.38 36.277 1 16.63 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 19.09 52.776 36.1 1 15.14 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 16.784 49.798 35.987 1 19.67 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 19.903 50.448 36.647 1 16.37 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 19.858 49.125 36.681 1 20.89 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 20.382 54.807 36.424 1 14.56 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 21.666 55.472 36.833 1 14.02 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 21.447 56.788 36.813 1 14.18 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 20.011 56.928 36.368 1 14.68 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 22.9 54.727 37.178 1 14.91 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 22.457 57.893 37.177 1 15.89 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 21.905 58.295 38.545 1 19.38 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 22.77 59.298 39.26 1 21.43 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 22.679 60.477 38.955 1 27.54 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 23.566 58.89 40.062 1 24.02 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 17.259 57.27 35.386 1 14.7 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 15.614 55.027 34.927 1 12.63 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 17.923 53.409 35.793 1 15.78 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 19.471 55.715 36.199 1 13.38 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 17.599 55.372 35.565 1 14.48 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #