data_5O1O # _model_server_result.job_id 5tiooZbAz1G-SqvwA6C8mw _model_server_result.datetime_utc '2024-11-24 00:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 5O1O # _exptl.entry_id 5O1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 115.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O1O _cell.length_a 92.374 _cell.length_b 102.414 _cell.length_c 142.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C5 H9 N O2' _chem_comp.formula_weight 115.13 _chem_comp.id PRO _chem_comp.mon_nstd_flag y _chem_comp.name PROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PRO sing 269 n n N CD PRO sing 270 n n N H PRO sing 271 n n CA C PRO sing 272 n n CA CB PRO sing 273 n n CA HA PRO sing 274 n n C O PRO doub 275 n n C OXT PRO sing 276 n n CB CG PRO sing 277 n n CB HB2 PRO sing 278 n n CB HB3 PRO sing 279 n n CG CD PRO sing 280 n n CG HG2 PRO sing 281 n n CG HG3 PRO sing 282 n n CD HD2 PRO sing 283 n n CD HD3 PRO sing 284 n n OXT HXT PRO sing 285 n n # _atom_sites.entry_id 5O1O _atom_sites.fract_transf_matrix[1][1] 0.010826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 1001 7 EDO EDO . D 3 PRO A 1 1002 2 PRO PRO . E 2 EDO B 1 1001 9 EDO EDO . F 3 PRO B 1 1002 1 PRO PRO . G 4 HOH A 1 1101 21 HOH HOH . G 4 HOH A 2 1102 20 HOH HOH . G 4 HOH A 3 1103 17 HOH HOH . G 4 HOH A 4 1104 23 HOH HOH . G 4 HOH A 5 1105 15 HOH HOH . G 4 HOH A 6 1106 16 HOH HOH . H 4 HOH B 1 1101 19 HOH HOH . H 4 HOH B 2 1102 12 HOH HOH . H 4 HOH B 3 1103 3 HOH HOH . H 4 HOH B 4 1104 4 HOH HOH . H 4 HOH B 5 1105 2 HOH HOH . H 4 HOH B 6 1106 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PRO . . . D 3 -4.165 -3.054 6.669 1 58.31 ? N PRO 1002 A 1 HETATM 2 C CA PRO . . . D 3 -5.404 -3.518 6.055 1 58.1 ? CA PRO 1002 A 1 HETATM 3 C C PRO . . . D 3 -5.359 -4.991 5.651 1 57.35 ? C PRO 1002 A 1 HETATM 4 O O PRO . . . D 3 -4.452 -5.431 4.946 1 57.39 ? O PRO 1002 A 1 HETATM 5 C CB PRO . . . D 3 -5.531 -2.617 4.824 1 58.38 ? CB PRO 1002 A 1 HETATM 6 C CG PRO . . . D 3 -4.888 -1.338 5.243 1 58.5 ? CG PRO 1002 A 1 HETATM 7 C CD PRO . . . D 3 -3.815 -1.688 6.24 1 58.32 ? CD PRO 1002 A 1 HETATM 8 O OXT PRO . . . D 3 -6.228 -5.776 6.027 1 56.82 ? OXT PRO 1002 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #