data_5O1R
#
_model_server_result.job_id            ocY6g40otpa4SY_VSiaNzw 
_model_server_result.datetime_utc      '2024-11-05 01:13:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":302}' 
#
_entry.id    5O1R 
#
_exptl.entry_id    5O1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5O1R 
_cell.length_a            119.45 
_cell.length_b            119.45 
_cell.length_c            364.22 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,H,L,N,P 1 1 
B,D,F,I,J,K,M,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 22 H CYS 22 1_555 C SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
disulf ? disulf2 C SG CYS 150 H CYS 150 1_555 C SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 D SG CYS 22 I CYS 22 1_555 D SG CYS 97 I CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf4 D SG CYS 150 I CYS 150 1_555 D SG CYS 206 I CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 E SG CYS 23 L CYS 23 1_555 E SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf6 E SG CYS 133 L CYS 133 1_555 E SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf7 F SG CYS 23 M CYS 23 1_555 F SG CYS 88 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf8 F SG CYS 133 M CYS 133 1_555 F SG CYS 193 M CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5O1R 
_atom_sites.fract_transf_matrix[1][1]    0.008372 
_atom_sites.fract_transf_matrix[1][2]    0.004833 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009667 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002746 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 EDO A 1 501 5 EDO EDO . 
H 4 EDO H 1 301 4 EDO EDO . 
I 4 EDO I 1 301 1 EDO EDO . 
J 4 EDO M 1 301 3 EDO EDO . 
K 4 EDO M 1 302 6 EDO EDO . 
L 5 HOH A 1 601 20 HOH HOH . 
L 5 HOH A 2 602 26 HOH HOH . 
M 5 HOH B 1 501 22 HOH HOH . 
M 5 HOH B 2 502 44 HOH HOH . 
M 5 HOH B 3 503 17 HOH HOH . 
M 5 HOH B 4 504 43 HOH HOH . 
M 5 HOH B 5 505 45 HOH HOH . 
N 5 HOH H 1 401 46 HOH HOH . 
N 5 HOH H 2 402 11 HOH HOH . 
N 5 HOH H 3 403 27 HOH HOH . 
N 5 HOH H 4 404 16 HOH HOH . 
N 5 HOH H 5 405 31 HOH HOH . 
N 5 HOH H 6 406 29 HOH HOH . 
N 5 HOH H 7 407 28 HOH HOH . 
N 5 HOH H 8 408 1 HOH HOH . 
N 5 HOH H 9 409 32 HOH HOH . 
N 5 HOH H 10 410 24 HOH HOH . 
N 5 HOH H 11 411 37 HOH HOH . 
O 5 HOH I 1 401 21 HOH HOH . 
O 5 HOH I 2 402 34 HOH HOH . 
O 5 HOH I 3 403 10 HOH HOH . 
O 5 HOH I 4 404 39 HOH HOH . 
O 5 HOH I 5 405 8 HOH HOH . 
O 5 HOH I 6 406 5 HOH HOH . 
O 5 HOH I 7 407 38 HOH HOH . 
O 5 HOH I 8 408 35 HOH HOH . 
P 5 HOH L 1 301 18 HOH HOH . 
P 5 HOH L 2 302 41 HOH HOH . 
P 5 HOH L 3 303 14 HOH HOH . 
P 5 HOH L 4 304 42 HOH HOH . 
P 5 HOH L 5 305 3 HOH HOH . 
P 5 HOH L 6 306 15 HOH HOH . 
P 5 HOH L 7 307 7 HOH HOH . 
P 5 HOH L 8 308 12 HOH HOH . 
P 5 HOH L 9 309 19 HOH HOH . 
P 5 HOH L 10 310 33 HOH HOH . 
Q 5 HOH M 1 401 23 HOH HOH . 
Q 5 HOH M 2 402 4 HOH HOH . 
Q 5 HOH M 3 403 30 HOH HOH . 
Q 5 HOH M 4 404 40 HOH HOH . 
Q 5 HOH M 5 405 25 HOH HOH . 
Q 5 HOH M 6 406 13 HOH HOH . 
Q 5 HOH M 7 407 36 HOH HOH . 
Q 5 HOH M 8 408 2 HOH HOH . 
Q 5 HOH M 9 409 6 HOH HOH . 
Q 5 HOH M 10 410 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 4 5.173 14.432 5.949 1 102.06 ? C1 EDO 302 M 1 
HETATM 2 O O1 EDO . . . K 4 5.007 15.222 4.773 1 100.04 ? O1 EDO 302 M 1 
HETATM 3 C C2 EDO . . . K 4 5.859 13.078 5.609 1 104.66 ? C2 EDO 302 M 1 
HETATM 4 O O2 EDO . . . K 4 6.822 13.243 4.567 1 106.57 ? O2 EDO 302 M 1 
HETATM 5 H H11 EDO . . . K 4 5.702 14.948 6.748 1 101.71 ? H11 EDO 302 M 1 
HETATM 6 H H12 EDO . . . K 4 4.159 14.268 6.309 1 102.26 ? H12 EDO 302 M 1 
HETATM 7 H HO1 EDO . . . K 4 4.168 14.928 4.331 1 99.88 ? HO1 EDO 302 M 1 
HETATM 8 H H21 EDO . . . K 4 6.427 12.709 6.462 1 104.31 ? H21 EDO 302 M 1 
HETATM 9 H H22 EDO . . . K 4 5.118 12.317 5.372 1 104.82 ? H22 EDO 302 M 1 
HETATM 10 H HO2 EDO . . . K 4 7.028 12.339 4.21 1 106.55 ? HO2 EDO 302 M 1 
#
_model_server_stats.io_time_ms              97 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#