data_5O1R # _model_server_result.job_id fV3XCz7ghKv545owexkJYw _model_server_result.datetime_utc '2024-11-05 01:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 5O1R # _exptl.entry_id 5O1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O1R _cell.length_a 119.45 _cell.length_b 119.45 _cell.length_c 364.22 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,H,L,N,P 1 1 B,D,F,I,J,K,M,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 H CYS 22 1_555 C SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 C SG CYS 150 H CYS 150 1_555 C SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 D SG CYS 22 I CYS 22 1_555 D SG CYS 97 I CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf4 D SG CYS 150 I CYS 150 1_555 D SG CYS 206 I CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 23 L CYS 23 1_555 E SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 E SG CYS 133 L CYS 133 1_555 E SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 F SG CYS 23 M CYS 23 1_555 F SG CYS 88 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf8 F SG CYS 133 M CYS 133 1_555 F SG CYS 193 M CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5O1R _atom_sites.fract_transf_matrix[1][1] 0.008372 _atom_sites.fract_transf_matrix[1][2] 0.004833 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 EDO A 1 501 5 EDO EDO . H 4 EDO H 1 301 4 EDO EDO . I 4 EDO I 1 301 1 EDO EDO . J 4 EDO M 1 301 3 EDO EDO . K 4 EDO M 1 302 6 EDO EDO . L 5 HOH A 1 601 20 HOH HOH . L 5 HOH A 2 602 26 HOH HOH . M 5 HOH B 1 501 22 HOH HOH . M 5 HOH B 2 502 44 HOH HOH . M 5 HOH B 3 503 17 HOH HOH . M 5 HOH B 4 504 43 HOH HOH . M 5 HOH B 5 505 45 HOH HOH . N 5 HOH H 1 401 46 HOH HOH . N 5 HOH H 2 402 11 HOH HOH . N 5 HOH H 3 403 27 HOH HOH . N 5 HOH H 4 404 16 HOH HOH . N 5 HOH H 5 405 31 HOH HOH . N 5 HOH H 6 406 29 HOH HOH . N 5 HOH H 7 407 28 HOH HOH . N 5 HOH H 8 408 1 HOH HOH . N 5 HOH H 9 409 32 HOH HOH . N 5 HOH H 10 410 24 HOH HOH . N 5 HOH H 11 411 37 HOH HOH . O 5 HOH I 1 401 21 HOH HOH . O 5 HOH I 2 402 34 HOH HOH . O 5 HOH I 3 403 10 HOH HOH . O 5 HOH I 4 404 39 HOH HOH . O 5 HOH I 5 405 8 HOH HOH . O 5 HOH I 6 406 5 HOH HOH . O 5 HOH I 7 407 38 HOH HOH . O 5 HOH I 8 408 35 HOH HOH . P 5 HOH L 1 301 18 HOH HOH . P 5 HOH L 2 302 41 HOH HOH . P 5 HOH L 3 303 14 HOH HOH . P 5 HOH L 4 304 42 HOH HOH . P 5 HOH L 5 305 3 HOH HOH . P 5 HOH L 6 306 15 HOH HOH . P 5 HOH L 7 307 7 HOH HOH . P 5 HOH L 8 308 12 HOH HOH . P 5 HOH L 9 309 19 HOH HOH . P 5 HOH L 10 310 33 HOH HOH . Q 5 HOH M 1 401 23 HOH HOH . Q 5 HOH M 2 402 4 HOH HOH . Q 5 HOH M 3 403 30 HOH HOH . Q 5 HOH M 4 404 40 HOH HOH . Q 5 HOH M 5 405 25 HOH HOH . Q 5 HOH M 6 406 13 HOH HOH . Q 5 HOH M 7 407 36 HOH HOH . Q 5 HOH M 8 408 2 HOH HOH . Q 5 HOH M 9 409 6 HOH HOH . Q 5 HOH M 10 410 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -9.281 27.932 42.9 1 75.52 ? C1 EDO 501 A 1 HETATM 2 O O1 EDO . . . G 4 -8.488 27.564 44.023 1 73.13 ? O1 EDO 501 A 1 HETATM 3 C C2 EDO . . . G 4 -8.594 27.449 41.532 1 74.29 ? C2 EDO 501 A 1 HETATM 4 O O2 EDO . . . G 4 -9.431 27.672 40.377 1 69.39 ? O2 EDO 501 A 1 HETATM 5 H H11 EDO . . . G 4 -10.302 27.565 42.99 1 75.89 ? H11 EDO 501 A 1 HETATM 6 H H12 EDO . . . G 4 -9.338 29.019 42.957 1 75.69 ? H12 EDO 501 A 1 HETATM 7 H HO1 EDO . . . G 4 -8.723 28.188 44.758 1 72.75 ? HO1 EDO 501 A 1 HETATM 8 H H21 EDO . . . G 4 -7.698 28.033 41.326 1 74.67 ? H21 EDO 501 A 1 HETATM 9 H H22 EDO . . . G 4 -8.269 26.412 41.609 1 74.26 ? H22 EDO 501 A 1 HETATM 10 H HO2 EDO . . . G 4 -9.117 28.506 39.938 1 68.8 ? HO2 EDO 501 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #