data_5O1S # _model_server_result.job_id 7wgdmfg_qrrkmAWg4JMluA _model_server_result.datetime_utc '2024-11-22 06:58:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 5O1S # _exptl.entry_id 5O1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.141 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Dimethyl fumarate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O1S _cell.length_a 46.951 _cell.length_b 46.951 _cell.length_c 291.865 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 579 1_555 A SG CYS 203 A CYS 579 7_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A O GLY 95 A GLY 471 1_555 B NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A O HIS 97 A HIS 473 1_555 B NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A O ILE 100 A ILE 476 1_555 B NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc4 A OG1 THR 102 A THR 478 1_555 B NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc5 B NA NA . A NA 801 1_555 E O HOH . A HOH 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 B NA NA . A NA 801 1_555 E O HOH . A HOH 988 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? # _chem_comp.formula 'C6 H10 O4' _chem_comp.formula_weight 146.141 _chem_comp.id 9HB _chem_comp.mon_nstd_flag . _chem_comp.name 'Dimethyl fumarate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 O09 9HB sing 1 n n O08 C07 9HB doub 2 n n O09 C07 9HB sing 3 n n C07 C06 9HB sing 4 n n C06 C05 9HB sing 5 n n C05 C03 9HB sing 6 n n C03 O02 9HB sing 7 n n C03 O04 9HB doub 8 n n O02 C01 9HB sing 9 n n C10 H1 9HB sing 10 n n C10 H2 9HB sing 11 n n C10 H3 9HB sing 12 n n C01 H4 9HB sing 13 n n C01 H5 9HB sing 14 n n C01 H6 9HB sing 15 n n C05 H7 9HB sing 16 n n C05 H8 9HB sing 17 n n C06 H9 9HB sing 18 n n C06 H10 9HB sing 19 n n # _atom_sites.entry_id 5O1S _atom_sites.fract_transf_matrix[1][1] 0.021299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 801 1 NA NA . C 3 9HB A 1 802 1 9HB LIG . D 3 9HB A 1 803 2 9HB LIG . E 4 HOH A 1 901 226 HOH HOH . E 4 HOH A 2 902 125 HOH HOH . E 4 HOH A 3 903 174 HOH HOH . E 4 HOH A 4 904 154 HOH HOH . E 4 HOH A 5 905 178 HOH HOH . E 4 HOH A 6 906 197 HOH HOH . E 4 HOH A 7 907 75 HOH HOH . E 4 HOH A 8 908 16 HOH HOH . E 4 HOH A 9 909 7 HOH HOH . E 4 HOH A 10 910 77 HOH HOH . E 4 HOH A 11 911 37 HOH HOH . E 4 HOH A 12 912 21 HOH HOH . E 4 HOH A 13 913 14 HOH HOH . E 4 HOH A 14 914 145 HOH HOH . E 4 HOH A 15 915 195 HOH HOH . E 4 HOH A 16 916 194 HOH HOH . E 4 HOH A 17 917 26 HOH HOH . E 4 HOH A 18 918 74 HOH HOH . E 4 HOH A 19 919 30 HOH HOH . E 4 HOH A 20 920 232 HOH HOH . E 4 HOH A 21 921 198 HOH HOH . E 4 HOH A 22 922 206 HOH HOH . E 4 HOH A 23 923 207 HOH HOH . E 4 HOH A 24 924 229 HOH HOH . E 4 HOH A 25 925 53 HOH HOH . E 4 HOH A 26 926 182 HOH HOH . E 4 HOH A 27 927 234 HOH HOH . E 4 HOH A 28 928 210 HOH HOH . E 4 HOH A 29 929 76 HOH HOH . E 4 HOH A 30 930 8 HOH HOH . E 4 HOH A 31 931 88 HOH HOH . E 4 HOH A 32 932 155 HOH HOH . E 4 HOH A 33 933 23 HOH HOH . E 4 HOH A 34 934 212 HOH HOH . E 4 HOH A 35 935 128 HOH HOH . E 4 HOH A 36 936 27 HOH HOH . E 4 HOH A 37 937 28 HOH HOH . E 4 HOH A 38 938 46 HOH HOH . E 4 HOH A 39 939 58 HOH HOH . E 4 HOH A 40 940 180 HOH HOH . E 4 HOH A 41 941 42 HOH HOH . E 4 HOH A 42 942 219 HOH HOH . E 4 HOH A 43 943 34 HOH HOH . E 4 HOH A 44 944 113 HOH HOH . E 4 HOH A 45 945 73 HOH HOH . E 4 HOH A 46 946 35 HOH HOH . E 4 HOH A 47 947 43 HOH HOH . E 4 HOH A 48 948 231 HOH HOH . E 4 HOH A 49 949 86 HOH HOH . E 4 HOH A 50 950 24 HOH HOH . E 4 HOH A 51 951 17 HOH HOH . E 4 HOH A 52 952 204 HOH HOH . E 4 HOH A 53 953 185 HOH HOH . E 4 HOH A 54 954 203 HOH HOH . E 4 HOH A 55 955 3 HOH HOH . E 4 HOH A 56 956 1 HOH HOH . E 4 HOH A 57 957 111 HOH HOH . E 4 HOH A 58 958 87 HOH HOH . E 4 HOH A 59 959 202 HOH HOH . E 4 HOH A 60 960 25 HOH HOH . E 4 HOH A 61 961 131 HOH HOH . E 4 HOH A 62 962 81 HOH HOH . E 4 HOH A 63 963 11 HOH HOH . E 4 HOH A 64 964 19 HOH HOH . E 4 HOH A 65 965 70 HOH HOH . E 4 HOH A 66 966 224 HOH HOH . E 4 HOH A 67 967 196 HOH HOH . E 4 HOH A 68 968 132 HOH HOH . E 4 HOH A 69 969 29 HOH HOH . E 4 HOH A 70 970 102 HOH HOH . E 4 HOH A 71 971 215 HOH HOH . E 4 HOH A 72 972 98 HOH HOH . E 4 HOH A 73 973 20 HOH HOH . E 4 HOH A 74 974 84 HOH HOH . E 4 HOH A 75 975 181 HOH HOH . E 4 HOH A 76 976 112 HOH HOH . E 4 HOH A 77 977 71 HOH HOH . E 4 HOH A 78 978 96 HOH HOH . E 4 HOH A 79 979 12 HOH HOH . E 4 HOH A 80 980 118 HOH HOH . E 4 HOH A 81 981 69 HOH HOH . E 4 HOH A 82 982 173 HOH HOH . E 4 HOH A 83 983 39 HOH HOH . E 4 HOH A 84 984 211 HOH HOH . E 4 HOH A 85 985 38 HOH HOH . E 4 HOH A 86 986 95 HOH HOH . E 4 HOH A 87 987 179 HOH HOH . E 4 HOH A 88 988 156 HOH HOH . E 4 HOH A 89 989 217 HOH HOH . E 4 HOH A 90 990 33 HOH HOH . E 4 HOH A 91 991 32 HOH HOH . E 4 HOH A 92 992 233 HOH HOH . E 4 HOH A 93 993 36 HOH HOH . E 4 HOH A 94 994 31 HOH HOH . E 4 HOH A 95 995 18 HOH HOH . E 4 HOH A 96 996 114 HOH HOH . E 4 HOH A 97 997 213 HOH HOH . E 4 HOH A 98 998 120 HOH HOH . E 4 HOH A 99 999 199 HOH HOH . E 4 HOH A 100 1000 62 HOH HOH . E 4 HOH A 101 1001 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9HB . . . C 3 -4.134 19.423 -21.661 1 51.63 ? C10 9HB 802 A 1 HETATM 2 C C01 9HB . . . C 3 -6.78 14.594 -17.507 1 72.67 ? C01 9HB 802 A 1 HETATM 3 O O02 9HB . . . C 3 -7.457 15.418 -18.38 1 67.85 ? O02 9HB 802 A 1 HETATM 4 C C03 9HB . . . C 3 -7.262 16.777 -18.421 1 67.05 ? C03 9HB 802 A 1 HETATM 5 O O04 9HB . . . C 3 -6.434 17.325 -17.699 1 68.57 ? O04 9HB 802 A 1 HETATM 6 C C05 9HB . . . C 3 -7.99 17.563 -19.467 1 61.71 ? C05 9HB 802 A 1 HETATM 7 C C06 9HB . . . C 3 -7.368 18.856 -19.86 1 58.05 ? C06 9HB 802 A 1 HETATM 8 C C07 9HB . . . C 3 -6.072 18.67 -20.554 1 53.36 ? C07 9HB 802 A 1 HETATM 9 O O08 9HB . . . C 3 -5.852 17.605 -21.087 1 54.93 ? O08 9HB 802 A 1 HETATM 10 O O09 9HB . . . C 3 -5.238 19.713 -20.858 1 54.6 ? O09 9HB 802 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #