data_5O1Y # _model_server_result.job_id kNVnc25toTiwbYEHd6BJJA _model_server_result.datetime_utc '2025-02-05 06:48:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 5O1Y # _exptl.entry_id 5O1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O1Y _cell.length_a 64.936 _cell.length_b 64.936 _cell.length_c 158.391 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 422 n n C C2 TRS sing 423 n n C C3 TRS sing 424 n n C N TRS sing 425 n n C1 O1 TRS sing 426 n n C1 H11 TRS sing 427 n n C1 H12 TRS sing 428 n n C2 O2 TRS sing 429 n n C2 H21 TRS sing 430 n n C2 H22 TRS sing 431 n n C3 O3 TRS sing 432 n n C3 H31 TRS sing 433 n n C3 H32 TRS sing 434 n n N HN1 TRS sing 435 n n N HN2 TRS sing 436 n n N HN3 TRS sing 437 n n O1 HO1 TRS sing 438 n n O2 HO2 TRS sing 439 n n O3 HO3 TRS sing 440 n n # _atom_sites.entry_id 5O1Y _atom_sites.fract_transf_matrix[1][1] 0.0154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 501 3 EDO EDO . D 3 EDO B 1 101 2 EDO EDO . E 4 TRS B 1 102 1 TRS TRS . F 5 HOH A 1 601 20 HOH HOH . F 5 HOH A 2 602 17 HOH HOH . F 5 HOH A 3 603 18 HOH HOH . F 5 HOH A 4 604 23 HOH HOH . F 5 HOH A 5 605 10 HOH HOH . F 5 HOH A 6 606 9 HOH HOH . F 5 HOH A 7 607 4 HOH HOH . F 5 HOH A 8 608 2 HOH HOH . F 5 HOH A 9 609 25 HOH HOH . F 5 HOH A 10 610 26 HOH HOH . F 5 HOH A 11 611 15 HOH HOH . F 5 HOH A 12 612 16 HOH HOH . F 5 HOH A 13 613 3 HOH HOH . F 5 HOH A 14 614 7 HOH HOH . F 5 HOH A 15 615 13 HOH HOH . F 5 HOH A 16 616 14 HOH HOH . F 5 HOH A 17 617 31 HOH HOH . F 5 HOH A 18 618 6 HOH HOH . F 5 HOH A 19 619 34 HOH HOH . F 5 HOH A 20 620 8 HOH HOH . F 5 HOH A 21 621 38 HOH HOH . F 5 HOH A 22 622 29 HOH HOH . F 5 HOH A 23 623 30 HOH HOH . F 5 HOH A 24 624 1 HOH HOH . F 5 HOH A 25 625 21 HOH HOH . F 5 HOH A 26 626 12 HOH HOH . F 5 HOH A 27 627 37 HOH HOH . F 5 HOH A 28 628 28 HOH HOH . F 5 HOH A 29 629 19 HOH HOH . F 5 HOH A 30 630 27 HOH HOH . F 5 HOH A 31 631 24 HOH HOH . F 5 HOH A 32 632 22 HOH HOH . F 5 HOH A 33 633 35 HOH HOH . F 5 HOH A 34 634 5 HOH HOH . F 5 HOH A 35 635 36 HOH HOH . F 5 HOH A 36 636 33 HOH HOH . G 5 HOH B 1 201 11 HOH HOH . G 5 HOH B 2 202 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 4 20.488 19.785 32.957 1 123.35 ? C TRS 102 B 1 HETATM 2 C C1 TRS . . . E 4 20.375 20.947 33.955 1 122.78 ? C1 TRS 102 B 1 HETATM 3 C C2 TRS . . . E 4 21.899 19.784 32.329 1 119.94 ? C2 TRS 102 B 1 HETATM 4 C C3 TRS . . . E 4 19.374 19.88 31.889 1 122.93 ? C3 TRS 102 B 1 HETATM 5 N N TRS . . . E 4 20.317 18.54 33.774 1 120.33 ? N TRS 102 B 1 HETATM 6 O O1 TRS . . . E 4 20.593 22.218 33.324 1 119.17 ? O1 TRS 102 B 1 HETATM 7 O O2 TRS . . . E 4 22.033 18.935 31.178 1 109.4 ? O2 TRS 102 B 1 HETATM 8 O O3 TRS . . . E 4 18.087 19.436 32.367 1 117.74 ? O3 TRS 102 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #