data_5O27
#
_model_server_result.job_id            Upu2aHPBtpMCpNdM-PcIkg 
_model_server_result.datetime_utc      '2024-11-01 08:32:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o27 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5O27 
#
_exptl.entry_id    5O27 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5O27 
_cell.length_a            89.811 
_cell.length_b            89.811 
_cell.length_c            114.333 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O27 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 62 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.083 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     5O27 
_atom_sites.fract_transf_matrix[1][1]    0.011134 
_atom_sites.fract_transf_matrix[1][2]    0.006429 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008746 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 201 HEM HEM . 
C 3 SO4 A 1 202 202 SO4 SO4 . 
D 4 XE A 1 203 203 XE XE . 
E 4 XE A 1 204 204 XE XE . 
F 4 XE A 1 205 205 XE XE . 
G 4 XE A 1 206 206 XE XE . 
H 4 XE A 1 207 207 XE XE . 
I 4 XE A 1 208 208 XE XE . 
J 4 XE A 1 209 209 XE XE . 
K 4 XE A 1 211 211 XE XE . 
L 5 HOH A 1 301 326 HOH HOH . 
L 5 HOH A 2 302 325 HOH HOH . 
L 5 HOH A 3 303 329 HOH HOH . 
L 5 HOH A 4 304 308 HOH HOH . 
L 5 HOH A 5 305 306 HOH HOH . 
L 5 HOH A 6 306 301 HOH HOH . 
L 5 HOH A 7 307 312 HOH HOH . 
L 5 HOH A 8 308 317 HOH HOH . 
L 5 HOH A 9 309 318 HOH HOH . 
L 5 HOH A 10 310 328 HOH HOH . 
L 5 HOH A 11 311 316 HOH HOH . 
L 5 HOH A 12 312 324 HOH HOH . 
L 5 HOH A 13 313 310 HOH HOH . 
L 5 HOH A 14 314 307 HOH HOH . 
L 5 HOH A 15 315 303 HOH HOH . 
L 5 HOH A 16 316 302 HOH HOH . 
L 5 HOH A 17 317 330 HOH HOH . 
L 5 HOH A 18 318 305 HOH HOH . 
L 5 HOH A 19 319 319 HOH HOH . 
L 5 HOH A 20 320 304 HOH HOH . 
L 5 HOH A 21 321 311 HOH HOH . 
L 5 HOH A 22 322 315 HOH HOH . 
L 5 HOH A 23 323 320 HOH HOH . 
L 5 HOH A 24 324 314 HOH HOH . 
L 5 HOH A 25 325 313 HOH HOH . 
L 5 HOH A 26 326 327 HOH HOH . 
L 5 HOH A 27 327 309 HOH HOH . 
L 5 HOH A 28 328 321 HOH HOH . 
L 5 HOH A 29 329 323 HOH HOH . 
L 5 HOH A 30 330 322 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . A . B 2 19.754 59.341 36.479 1 20.09 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . A . B 2 15.253 58.672 34.668 1 26.36 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . A . B 2 15.993 53.925 35.384 1 21.6 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . A . B 2 20.624 54.673 36.56 1 28.3 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . A . B 2 18.489 59.528 35.975 1 23.85 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . A . B 2 17.924 60.854 35.68 1 24.96 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . A . B 2 16.668 60.652 35.142 1 24.26 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . A . B 2 16.431 59.254 35.105 1 24.99 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . A . B 2 15.696 61.728 34.711 1 29.35 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . A . B 2 18.572 62.21 35.889 1 22.51 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . A . B 2 19.095 62.837 34.57 1 24.31 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . A . B 2 20.23 61.945 34.005 1 28.44 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . A . B 2 21.223 61.74 34.721 1 32.71 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . A . B 2 20.303 61.422 32.836 1 29.22 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . A . B 2 15.024 57.278 34.729 1 26.75 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . A . B 2 13.79 56.654 34.41 1 32.33 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . A . B 2 13.989 55.332 34.57 1 31.87 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . A . B 2 15.371 55.122 35.108 1 25.94 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . A . B 2 12.494 57.252 33.958 1 32.62 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . A . B 2 12.892 54.474 34.361 1 27.64 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . A . B 2 12.772 53.417 35.008 1 31.4 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . A . B 2 17.261 53.722 35.772 1 25.28 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . A . B 2 17.839 52.451 35.985 1 28.28 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . A . B 2 19.183 52.671 36.316 1 24.99 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . A . B 2 19.405 54.077 36.244 1 27.77 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . A . B 2 17.146 51.133 35.858 1 32.06 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . A . B 2 20.226 51.76 36.684 1 28.76 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . A . B 2 20.118 50.459 36.771 1 36.61 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . A . B 2 20.722 56.061 36.665 1 27.38 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . A . B 2 21.952 56.693 37.061 1 28.94 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . A . B 2 21.72 57.966 37.06 1 31.22 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . A . B 2 20.321 58.118 36.671 1 23.69 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . A . B 2 23.264 56.099 37.413 1 23.8 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . A . B 2 22.723 58.986 37.508 1 28.18 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . A . B 2 22.288 59.382 38.925 1 35.06 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . A . B 2 23.206 60.45 39.637 1 36.98 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . A . B 2 22.849 61.652 39.739 1 39.8 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . A . B 2 24.319 60.132 40.066 1 31.37 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . A . B 2 17.532 58.572 35.615 1 22.43 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . A . B 2 15.876 56.336 35.118 1 27.99 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . A . B 2 18.224 54.682 35.936 1 21.73 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . A . B 2 19.779 56.944 36.382 1 30.37 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . A . B 2 17.882 56.651 35.748 1 25.02 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#