data_5O2S # _model_server_result.job_id 8sKFjtm8E7b5dxjDDXqy0g _model_server_result.datetime_utc '2024-11-08 10:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":202}' # _entry.id 5O2S # _exptl.entry_id 5O2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O2S _cell.length_a 197.14 _cell.length_b 197.14 _cell.length_c 84.61 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,R 1 1 C,D,K,L,S,T 2 1 E,F,M,N,U,V 3 1 G,H,O,P,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 N N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 20 A SER 17 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 I O2B GDP . A GDP 201 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 J MG MG . A MG 202 1_555 Q O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc4 J MG MG . A MG 202 1_555 Q O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 J MG MG . A MG 202 1_555 Q O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 J MG MG . A MG 202 1_555 Q O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc7 C OG SER 20 C SER 17 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc8 K O3B GDP . C GDP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 L MG MG . C MG 202 1_555 S O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc10 L MG MG . C MG 202 1_555 S O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc11 L MG MG . C MG 202 1_555 S O HOH . C HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 L MG MG . C MG 202 1_555 S O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc13 E OG SER 20 E SER 17 1_555 N MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc14 M O3B GDP . E GDP 201 1_555 N MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc15 N MG MG . E MG 202 1_555 U O HOH . E HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? metalc ? metalc16 N MG MG . E MG 202 1_555 U O HOH . E HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc17 N MG MG . E MG 202 1_555 U O HOH . E HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc18 N MG MG . E MG 202 1_555 U O HOH . E HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc19 G OG SER 20 G SER 17 1_555 P MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc20 O O3B GDP . G GDP 201 1_555 P MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc21 P MG MG . G MG 202 1_555 W O HOH . G HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc22 P MG MG . G MG 202 1_555 W O HOH . G HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc23 P MG MG . G MG 202 1_555 W O HOH . G HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc24 P MG MG . G MG 202 1_555 W O HOH . G HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5O2S _atom_sites.fract_transf_matrix[1][1] 0.005073 _atom_sites.fract_transf_matrix[1][2] 0.002929 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GDP A 1 201 1 GDP GDP . J 4 MG A 1 202 1 MG MG . K 3 GDP C 1 201 2 GDP GDP . L 4 MG C 1 202 2 MG MG . M 3 GDP E 1 201 3 GDP GDP . N 4 MG E 1 202 3 MG MG . O 3 GDP G 1 201 4 GDP GDP . P 4 MG G 1 202 4 MG MG . Q 5 HOH A 1 301 2 HOH HOH . Q 5 HOH A 2 302 3 HOH HOH . Q 5 HOH A 3 303 28 HOH HOH . Q 5 HOH A 4 304 1 HOH HOH . Q 5 HOH A 5 305 4 HOH HOH . Q 5 HOH A 6 306 31 HOH HOH . Q 5 HOH A 7 307 27 HOH HOH . Q 5 HOH A 8 308 17 HOH HOH . Q 5 HOH A 9 309 26 HOH HOH . Q 5 HOH A 10 310 58 HOH HOH . Q 5 HOH A 11 311 25 HOH HOH . Q 5 HOH A 12 312 56 HOH HOH . Q 5 HOH A 13 313 29 HOH HOH . Q 5 HOH A 14 314 20 HOH HOH . R 5 HOH B 1 201 19 HOH HOH . R 5 HOH B 2 202 22 HOH HOH . R 5 HOH B 3 203 39 HOH HOH . R 5 HOH B 4 204 36 HOH HOH . R 5 HOH B 5 205 37 HOH HOH . R 5 HOH B 6 206 54 HOH HOH . S 5 HOH C 1 301 6 HOH HOH . S 5 HOH C 2 302 8 HOH HOH . S 5 HOH C 3 303 5 HOH HOH . S 5 HOH C 4 304 7 HOH HOH . S 5 HOH C 5 305 30 HOH HOH . S 5 HOH C 6 306 49 HOH HOH . S 5 HOH C 7 307 57 HOH HOH . S 5 HOH C 8 308 51 HOH HOH . S 5 HOH C 9 309 40 HOH HOH . S 5 HOH C 10 310 41 HOH HOH . S 5 HOH C 11 311 59 HOH HOH . S 5 HOH C 12 312 47 HOH HOH . S 5 HOH C 13 313 38 HOH HOH . S 5 HOH C 14 314 23 HOH HOH . S 5 HOH C 15 315 46 HOH HOH . S 5 HOH C 16 316 35 HOH HOH . S 5 HOH C 17 317 34 HOH HOH . S 5 HOH C 18 318 50 HOH HOH . S 5 HOH C 19 319 18 HOH HOH . S 5 HOH C 20 320 33 HOH HOH . T 5 HOH D 1 201 60 HOH HOH . T 5 HOH D 2 202 48 HOH HOH . U 5 HOH E 1 301 9 HOH HOH . U 5 HOH E 2 302 10 HOH HOH . U 5 HOH E 3 303 11 HOH HOH . U 5 HOH E 4 304 12 HOH HOH . U 5 HOH E 5 305 44 HOH HOH . U 5 HOH E 6 306 32 HOH HOH . U 5 HOH E 7 307 43 HOH HOH . U 5 HOH E 8 308 61 HOH HOH . U 5 HOH E 9 309 21 HOH HOH . U 5 HOH E 10 310 52 HOH HOH . U 5 HOH E 11 311 45 HOH HOH . U 5 HOH E 12 312 53 HOH HOH . V 5 HOH F 1 201 55 HOH HOH . W 5 HOH G 1 301 14 HOH HOH . W 5 HOH G 2 302 13 HOH HOH . W 5 HOH G 3 303 16 HOH HOH . W 5 HOH G 4 304 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.53 _atom_site.Cartn_y -81.553 _atom_site.Cartn_z -42.326 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #