data_5O33 # _model_server_result.job_id KoDlTyJ9QdT6Mj7zs3xWYQ _model_server_result.datetime_utc '2024-11-26 11:06:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1504}' # _entry.id 5O33 # _exptl.entry_id 5O33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O33 _cell.length_a 63.255 _cell.length_b 63.255 _cell.length_c 346.704 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5O33 _atom_sites.fract_transf_matrix[1][1] 0.015809 _atom_sites.fract_transf_matrix[1][2] 0.009127 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 201 1 EDO EDO . D 3 EDO A 1 202 3 EDO EDO . E 4 GDP A 1 203 1 GDP GDP . F 3 EDO B 1 1501 2 EDO EDO . G 3 EDO B 1 1502 4 EDO EDO . H 3 EDO B 1 1503 5 EDO EDO . I 3 EDO B 1 1504 6 EDO EDO . J 5 HOH A 1 301 108 HOH HOH . J 5 HOH A 2 302 242 HOH HOH . J 5 HOH A 3 303 273 HOH HOH . J 5 HOH A 4 304 139 HOH HOH . J 5 HOH A 5 305 292 HOH HOH . J 5 HOH A 6 306 210 HOH HOH . J 5 HOH A 7 307 124 HOH HOH . J 5 HOH A 8 308 297 HOH HOH . J 5 HOH A 9 309 195 HOH HOH . J 5 HOH A 10 310 143 HOH HOH . J 5 HOH A 11 311 260 HOH HOH . J 5 HOH A 12 312 56 HOH HOH . J 5 HOH A 13 313 129 HOH HOH . J 5 HOH A 14 314 194 HOH HOH . J 5 HOH A 15 315 27 HOH HOH . J 5 HOH A 16 316 42 HOH HOH . J 5 HOH A 17 317 162 HOH HOH . J 5 HOH A 18 318 102 HOH HOH . J 5 HOH A 19 319 64 HOH HOH . J 5 HOH A 20 320 241 HOH HOH . J 5 HOH A 21 321 18 HOH HOH . J 5 HOH A 22 322 161 HOH HOH . J 5 HOH A 23 323 25 HOH HOH . J 5 HOH A 24 324 121 HOH HOH . J 5 HOH A 25 325 304 HOH HOH . J 5 HOH A 26 326 78 HOH HOH . J 5 HOH A 27 327 7 HOH HOH . J 5 HOH A 28 328 48 HOH HOH . J 5 HOH A 29 329 61 HOH HOH . J 5 HOH A 30 330 205 HOH HOH . J 5 HOH A 31 331 75 HOH HOH . J 5 HOH A 32 332 73 HOH HOH . J 5 HOH A 33 333 72 HOH HOH . J 5 HOH A 34 334 220 HOH HOH . J 5 HOH A 35 335 200 HOH HOH . J 5 HOH A 36 336 113 HOH HOH . J 5 HOH A 37 337 99 HOH HOH . J 5 HOH A 38 338 65 HOH HOH . J 5 HOH A 39 339 89 HOH HOH . J 5 HOH A 40 340 163 HOH HOH . J 5 HOH A 41 341 32 HOH HOH . J 5 HOH A 42 342 185 HOH HOH . J 5 HOH A 43 343 122 HOH HOH . J 5 HOH A 44 344 26 HOH HOH . J 5 HOH A 45 345 46 HOH HOH . J 5 HOH A 46 346 97 HOH HOH . J 5 HOH A 47 347 86 HOH HOH . J 5 HOH A 48 348 16 HOH HOH . J 5 HOH A 49 349 5 HOH HOH . J 5 HOH A 50 350 98 HOH HOH . J 5 HOH A 51 351 1 HOH HOH . J 5 HOH A 52 352 199 HOH HOH . J 5 HOH A 53 353 174 HOH HOH . J 5 HOH A 54 354 83 HOH HOH . J 5 HOH A 55 355 151 HOH HOH . J 5 HOH A 56 356 6 HOH HOH . J 5 HOH A 57 357 144 HOH HOH . J 5 HOH A 58 358 87 HOH HOH . J 5 HOH A 59 359 160 HOH HOH . J 5 HOH A 60 360 127 HOH HOH . J 5 HOH A 61 361 9 HOH HOH . J 5 HOH A 62 362 142 HOH HOH . J 5 HOH A 63 363 30 HOH HOH . J 5 HOH A 64 364 49 HOH HOH . J 5 HOH A 65 365 240 HOH HOH . J 5 HOH A 66 366 54 HOH HOH . J 5 HOH A 67 367 96 HOH HOH . J 5 HOH A 68 368 112 HOH HOH . J 5 HOH A 69 369 180 HOH HOH . J 5 HOH A 70 370 191 HOH HOH . J 5 HOH A 71 371 123 HOH HOH . J 5 HOH A 72 372 51 HOH HOH . J 5 HOH A 73 373 59 HOH HOH . J 5 HOH A 74 374 34 HOH HOH . J 5 HOH A 75 375 15 HOH HOH . J 5 HOH A 76 376 52 HOH HOH . J 5 HOH A 77 377 152 HOH HOH . J 5 HOH A 78 378 267 HOH HOH . J 5 HOH A 79 379 126 HOH HOH . J 5 HOH A 80 380 3 HOH HOH . J 5 HOH A 81 381 153 HOH HOH . J 5 HOH A 82 382 201 HOH HOH . J 5 HOH A 83 383 245 HOH HOH . J 5 HOH A 84 384 118 HOH HOH . J 5 HOH A 85 385 256 HOH HOH . J 5 HOH A 86 386 21 HOH HOH . J 5 HOH A 87 387 296 HOH HOH . J 5 HOH A 88 388 158 HOH HOH . J 5 HOH A 89 389 106 HOH HOH . J 5 HOH A 90 390 146 HOH HOH . J 5 HOH A 91 391 84 HOH HOH . J 5 HOH A 92 392 11 HOH HOH . J 5 HOH A 93 393 203 HOH HOH . J 5 HOH A 94 394 62 HOH HOH . J 5 HOH A 95 395 77 HOH HOH . J 5 HOH A 96 396 57 HOH HOH . J 5 HOH A 97 397 284 HOH HOH . J 5 HOH A 98 398 244 HOH HOH . J 5 HOH A 99 399 281 HOH HOH . J 5 HOH A 100 400 258 HOH HOH . J 5 HOH A 101 401 140 HOH HOH . J 5 HOH A 102 402 262 HOH HOH . J 5 HOH A 103 403 302 HOH HOH . J 5 HOH A 104 404 159 HOH HOH . J 5 HOH A 105 405 149 HOH HOH . J 5 HOH A 106 406 80 HOH HOH . J 5 HOH A 107 407 218 HOH HOH . J 5 HOH A 108 408 145 HOH HOH . J 5 HOH A 109 409 81 HOH HOH . J 5 HOH A 110 410 282 HOH HOH . J 5 HOH A 111 411 270 HOH HOH . J 5 HOH A 112 412 286 HOH HOH . J 5 HOH A 113 413 298 HOH HOH . J 5 HOH A 114 414 183 HOH HOH . J 5 HOH A 115 415 300 HOH HOH . J 5 HOH A 116 416 271 HOH HOH . J 5 HOH A 117 417 261 HOH HOH . J 5 HOH A 118 418 216 HOH HOH . J 5 HOH A 119 419 283 HOH HOH . J 5 HOH A 120 420 202 HOH HOH . J 5 HOH A 121 421 303 HOH HOH . J 5 HOH A 122 422 212 HOH HOH . J 5 HOH A 123 423 120 HOH HOH . J 5 HOH A 124 424 277 HOH HOH . J 5 HOH A 125 425 197 HOH HOH . J 5 HOH A 126 426 213 HOH HOH . J 5 HOH A 127 427 133 HOH HOH . J 5 HOH A 128 428 176 HOH HOH . J 5 HOH A 129 429 231 HOH HOH . J 5 HOH A 130 430 243 HOH HOH . J 5 HOH A 131 431 248 HOH HOH . J 5 HOH A 132 432 301 HOH HOH . J 5 HOH A 133 433 171 HOH HOH . J 5 HOH A 134 434 279 HOH HOH . J 5 HOH A 135 435 184 HOH HOH . J 5 HOH A 136 436 237 HOH HOH . J 5 HOH A 137 437 55 HOH HOH . J 5 HOH A 138 438 178 HOH HOH . J 5 HOH A 139 439 92 HOH HOH . J 5 HOH A 140 440 290 HOH HOH . J 5 HOH A 141 441 207 HOH HOH . J 5 HOH A 142 442 60 HOH HOH . J 5 HOH A 143 443 70 HOH HOH . J 5 HOH A 144 444 257 HOH HOH . J 5 HOH A 145 445 239 HOH HOH . J 5 HOH A 146 446 156 HOH HOH . J 5 HOH A 147 447 107 HOH HOH . J 5 HOH A 148 448 130 HOH HOH . J 5 HOH A 149 449 68 HOH HOH . K 5 HOH B 1 1601 294 HOH HOH . K 5 HOH B 2 1602 255 HOH HOH . K 5 HOH B 3 1603 117 HOH HOH . K 5 HOH B 4 1604 299 HOH HOH . K 5 HOH B 5 1605 128 HOH HOH . K 5 HOH B 6 1606 165 HOH HOH . K 5 HOH B 7 1607 232 HOH HOH . K 5 HOH B 8 1608 219 HOH HOH . K 5 HOH B 9 1609 37 HOH HOH . K 5 HOH B 10 1610 157 HOH HOH . K 5 HOH B 11 1611 181 HOH HOH . K 5 HOH B 12 1612 67 HOH HOH . K 5 HOH B 13 1613 79 HOH HOH . K 5 HOH B 14 1614 295 HOH HOH . K 5 HOH B 15 1615 119 HOH HOH . K 5 HOH B 16 1616 110 HOH HOH . K 5 HOH B 17 1617 74 HOH HOH . K 5 HOH B 18 1618 173 HOH HOH . K 5 HOH B 19 1619 305 HOH HOH . K 5 HOH B 20 1620 2 HOH HOH . K 5 HOH B 21 1621 278 HOH HOH . K 5 HOH B 22 1622 131 HOH HOH . K 5 HOH B 23 1623 193 HOH HOH . K 5 HOH B 24 1624 125 HOH HOH . K 5 HOH B 25 1625 228 HOH HOH . K 5 HOH B 26 1626 136 HOH HOH . K 5 HOH B 27 1627 43 HOH HOH . K 5 HOH B 28 1628 109 HOH HOH . K 5 HOH B 29 1629 4 HOH HOH . K 5 HOH B 30 1630 76 HOH HOH . K 5 HOH B 31 1631 226 HOH HOH . K 5 HOH B 32 1632 50 HOH HOH . K 5 HOH B 33 1633 22 HOH HOH . K 5 HOH B 34 1634 288 HOH HOH . K 5 HOH B 35 1635 132 HOH HOH . K 5 HOH B 36 1636 63 HOH HOH . K 5 HOH B 37 1637 266 HOH HOH . K 5 HOH B 38 1638 172 HOH HOH . K 5 HOH B 39 1639 138 HOH HOH . K 5 HOH B 40 1640 190 HOH HOH . K 5 HOH B 41 1641 116 HOH HOH . K 5 HOH B 42 1642 104 HOH HOH . K 5 HOH B 43 1643 19 HOH HOH . K 5 HOH B 44 1644 91 HOH HOH . K 5 HOH B 45 1645 90 HOH HOH . K 5 HOH B 46 1646 135 HOH HOH . K 5 HOH B 47 1647 17 HOH HOH . K 5 HOH B 48 1648 10 HOH HOH . K 5 HOH B 49 1649 23 HOH HOH . K 5 HOH B 50 1650 40 HOH HOH . K 5 HOH B 51 1651 155 HOH HOH . K 5 HOH B 52 1652 150 HOH HOH . K 5 HOH B 53 1653 94 HOH HOH . K 5 HOH B 54 1654 58 HOH HOH . K 5 HOH B 55 1655 230 HOH HOH . K 5 HOH B 56 1656 275 HOH HOH . K 5 HOH B 57 1657 100 HOH HOH . K 5 HOH B 58 1658 12 HOH HOH . K 5 HOH B 59 1659 233 HOH HOH . K 5 HOH B 60 1660 182 HOH HOH . K 5 HOH B 61 1661 28 HOH HOH . K 5 HOH B 62 1662 214 HOH HOH . K 5 HOH B 63 1663 82 HOH HOH . K 5 HOH B 64 1664 249 HOH HOH . K 5 HOH B 65 1665 31 HOH HOH . K 5 HOH B 66 1666 192 HOH HOH . K 5 HOH B 67 1667 187 HOH HOH . K 5 HOH B 68 1668 196 HOH HOH . K 5 HOH B 69 1669 41 HOH HOH . K 5 HOH B 70 1670 170 HOH HOH . K 5 HOH B 71 1671 36 HOH HOH . K 5 HOH B 72 1672 259 HOH HOH . K 5 HOH B 73 1673 224 HOH HOH . K 5 HOH B 74 1674 105 HOH HOH . K 5 HOH B 75 1675 93 HOH HOH . K 5 HOH B 76 1676 20 HOH HOH . K 5 HOH B 77 1677 14 HOH HOH . K 5 HOH B 78 1678 53 HOH HOH . K 5 HOH B 79 1679 164 HOH HOH . K 5 HOH B 80 1680 38 HOH HOH . K 5 HOH B 81 1681 222 HOH HOH . K 5 HOH B 82 1682 29 HOH HOH . K 5 HOH B 83 1683 198 HOH HOH . K 5 HOH B 84 1684 103 HOH HOH . K 5 HOH B 85 1685 134 HOH HOH . K 5 HOH B 86 1686 45 HOH HOH . K 5 HOH B 87 1687 169 HOH HOH . K 5 HOH B 88 1688 33 HOH HOH . K 5 HOH B 89 1689 280 HOH HOH . K 5 HOH B 90 1690 217 HOH HOH . K 5 HOH B 91 1691 101 HOH HOH . K 5 HOH B 92 1692 115 HOH HOH . K 5 HOH B 93 1693 114 HOH HOH . K 5 HOH B 94 1694 95 HOH HOH . K 5 HOH B 95 1695 208 HOH HOH . K 5 HOH B 96 1696 253 HOH HOH . K 5 HOH B 97 1697 8 HOH HOH . K 5 HOH B 98 1698 209 HOH HOH . K 5 HOH B 99 1699 234 HOH HOH . K 5 HOH B 100 1700 66 HOH HOH . K 5 HOH B 101 1701 269 HOH HOH . K 5 HOH B 102 1702 221 HOH HOH . K 5 HOH B 103 1703 47 HOH HOH . K 5 HOH B 104 1704 289 HOH HOH . K 5 HOH B 105 1705 147 HOH HOH . K 5 HOH B 106 1706 211 HOH HOH . K 5 HOH B 107 1707 111 HOH HOH . K 5 HOH B 108 1708 39 HOH HOH . K 5 HOH B 109 1709 274 HOH HOH . K 5 HOH B 110 1710 227 HOH HOH . K 5 HOH B 111 1711 215 HOH HOH . K 5 HOH B 112 1712 179 HOH HOH . K 5 HOH B 113 1713 71 HOH HOH . K 5 HOH B 114 1714 148 HOH HOH . K 5 HOH B 115 1715 287 HOH HOH . K 5 HOH B 116 1716 188 HOH HOH . K 5 HOH B 117 1717 85 HOH HOH . K 5 HOH B 118 1718 254 HOH HOH . K 5 HOH B 119 1719 291 HOH HOH . K 5 HOH B 120 1720 265 HOH HOH . K 5 HOH B 121 1721 69 HOH HOH . K 5 HOH B 122 1722 235 HOH HOH . K 5 HOH B 123 1723 175 HOH HOH . K 5 HOH B 124 1724 264 HOH HOH . K 5 HOH B 125 1725 250 HOH HOH . K 5 HOH B 126 1726 263 HOH HOH . K 5 HOH B 127 1727 276 HOH HOH . K 5 HOH B 128 1728 44 HOH HOH . K 5 HOH B 129 1729 238 HOH HOH . K 5 HOH B 130 1730 186 HOH HOH . K 5 HOH B 131 1731 88 HOH HOH . K 5 HOH B 132 1732 293 HOH HOH . K 5 HOH B 133 1733 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 -8.214 -0.61 39.295 1 62.27 ? C1 EDO 1504 B 1 HETATM 2 O O1 EDO . . . I 3 -9.236 0.12 38.601 1 61.57 ? O1 EDO 1504 B 1 HETATM 3 C C2 EDO . . . I 3 -6.91 -0.535 38.509 1 65.43 ? C2 EDO 1504 B 1 HETATM 4 O O2 EDO . . . I 3 -6.163 0.614 38.924 1 74.89 ? O2 EDO 1504 B 1 HETATM 5 H H11 EDO . . . I 3 -8.07 -0.187 40.292 1 74.73 ? H11 EDO 1504 B 1 HETATM 6 H H12 EDO . . . I 3 -8.517 -1.653 39.408 1 74.73 ? H12 EDO 1504 B 1 HETATM 7 H HO1 EDO . . . I 3 -10.062 0.072 39.1 1 73.88 ? HO1 EDO 1504 B 1 HETATM 8 H H21 EDO . . . I 3 -6.322 -1.439 38.682 1 78.51 ? H21 EDO 1504 B 1 HETATM 9 H H22 EDO . . . I 3 -7.126 -0.468 37.441 1 78.51 ? H22 EDO 1504 B 1 HETATM 10 H HO2 EDO . . . I 3 -5.337 0.659 38.424 1 89.86 ? HO2 EDO 1504 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #