data_5O39
#
_model_server_result.job_id            Zh2RVwlY6OYta5kyBO-cGg 
_model_server_result.datetime_utc      '2024-11-25 11:50:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o39 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5O39 
#
_exptl.entry_id    5O39 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5O39 
_cell.length_a            52.406 
_cell.length_b            72.129 
_cell.length_c            31.99 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O39 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O3' 
_chem_comp.formula_weight    134.174 
_chem_comp.id                DQW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAI CAG DQW sing 137 n n 
OAA CAB DQW sing 138 n n 
CAB CAD DQW sing 139 n n 
CAB CAC DQW sing 140 n n 
CAG OAH DQW sing 141 n n 
CAG CAF DQW sing 142 n n 
OAE CAC DQW sing 143 n n 
OAE CAF DQW sing 144 n n 
CAD HAG DQW sing 145 n n 
CAD HAE DQW sing 146 n n 
CAD HAF DQW sing 147 n n 
CAB HAB DQW sing 148 n n 
OAA HAA DQW sing 149 n n 
CAC HAC DQW sing 150 n n 
CAC HAD DQW sing 151 n n 
CAF HAI DQW sing 152 n n 
CAF HAH DQW sing 153 n n 
CAG HAJ DQW sing 154 n n 
CAI HAL DQW sing 155 n n 
CAI HAM DQW sing 156 n n 
CAI HAK DQW sing 157 n n 
OAH HAN DQW sing 158 n n 
#
_atom_sites.entry_id                     5O39 
_atom_sites.fract_transf_matrix[1][1]    0.019082 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013864 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.03126 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 31O A 1 501 1 31O ME . 
C 3 CL A 1 502 1 CL CL . 
D 4 DQW A 1 503 1 DQW DPG . 
E 5 HOH A 1 601 207 HOH HOH . 
E 5 HOH A 2 602 40 HOH HOH . 
E 5 HOH A 3 603 124 HOH HOH . 
E 5 HOH A 4 604 196 HOH HOH . 
E 5 HOH A 5 605 154 HOH HOH . 
E 5 HOH A 6 606 126 HOH HOH . 
E 5 HOH A 7 607 149 HOH HOH . 
E 5 HOH A 8 608 204 HOH HOH . 
E 5 HOH A 9 609 158 HOH HOH . 
E 5 HOH A 10 610 142 HOH HOH . 
E 5 HOH A 11 611 206 HOH HOH . 
E 5 HOH A 12 612 112 HOH HOH . 
E 5 HOH A 13 613 202 HOH HOH . 
E 5 HOH A 14 614 15 HOH HOH . 
E 5 HOH A 15 615 8 HOH HOH . 
E 5 HOH A 16 616 69 HOH HOH . 
E 5 HOH A 17 617 59 HOH HOH . 
E 5 HOH A 18 618 81 HOH HOH . 
E 5 HOH A 19 619 201 HOH HOH . 
E 5 HOH A 20 620 42 HOH HOH . 
E 5 HOH A 21 621 97 HOH HOH . 
E 5 HOH A 22 622 1 HOH HOH . 
E 5 HOH A 23 623 43 HOH HOH . 
E 5 HOH A 24 624 48 HOH HOH . 
E 5 HOH A 25 625 23 HOH HOH . 
E 5 HOH A 26 626 14 HOH HOH . 
E 5 HOH A 27 627 72 HOH HOH . 
E 5 HOH A 28 628 56 HOH HOH . 
E 5 HOH A 29 629 152 HOH HOH . 
E 5 HOH A 30 630 67 HOH HOH . 
E 5 HOH A 31 631 167 HOH HOH . 
E 5 HOH A 32 632 20 HOH HOH . 
E 5 HOH A 33 633 9 HOH HOH . 
E 5 HOH A 34 634 74 HOH HOH . 
E 5 HOH A 35 635 143 HOH HOH . 
E 5 HOH A 36 636 94 HOH HOH . 
E 5 HOH A 37 637 171 HOH HOH . 
E 5 HOH A 38 638 33 HOH HOH . 
E 5 HOH A 39 639 99 HOH HOH . 
E 5 HOH A 40 640 3 HOH HOH . 
E 5 HOH A 41 641 18 HOH HOH . 
E 5 HOH A 42 642 32 HOH HOH . 
E 5 HOH A 43 643 30 HOH HOH . 
E 5 HOH A 44 644 77 HOH HOH . 
E 5 HOH A 45 645 10 HOH HOH . 
E 5 HOH A 46 646 7 HOH HOH . 
E 5 HOH A 47 647 192 HOH HOH . 
E 5 HOH A 48 648 190 HOH HOH . 
E 5 HOH A 49 649 12 HOH HOH . 
E 5 HOH A 50 650 27 HOH HOH . 
E 5 HOH A 51 651 4 HOH HOH . 
E 5 HOH A 52 652 52 HOH HOH . 
E 5 HOH A 53 653 28 HOH HOH . 
E 5 HOH A 54 654 71 HOH HOH . 
E 5 HOH A 55 655 85 HOH HOH . 
E 5 HOH A 56 656 64 HOH HOH . 
E 5 HOH A 57 657 49 HOH HOH . 
E 5 HOH A 58 658 37 HOH HOH . 
E 5 HOH A 59 659 163 HOH HOH . 
E 5 HOH A 60 660 119 HOH HOH . 
E 5 HOH A 61 661 90 HOH HOH . 
E 5 HOH A 62 662 44 HOH HOH . 
E 5 HOH A 63 663 47 HOH HOH . 
E 5 HOH A 64 664 24 HOH HOH . 
E 5 HOH A 65 665 16 HOH HOH . 
E 5 HOH A 66 666 68 HOH HOH . 
E 5 HOH A 67 667 5 HOH HOH . 
E 5 HOH A 68 668 2 HOH HOH . 
E 5 HOH A 69 669 164 HOH HOH . 
E 5 HOH A 70 670 95 HOH HOH . 
E 5 HOH A 71 671 93 HOH HOH . 
E 5 HOH A 72 672 21 HOH HOH . 
E 5 HOH A 73 673 121 HOH HOH . 
E 5 HOH A 74 674 19 HOH HOH . 
E 5 HOH A 75 675 115 HOH HOH . 
E 5 HOH A 76 676 157 HOH HOH . 
E 5 HOH A 77 677 191 HOH HOH . 
E 5 HOH A 78 678 98 HOH HOH . 
E 5 HOH A 79 679 63 HOH HOH . 
E 5 HOH A 80 680 22 HOH HOH . 
E 5 HOH A 81 681 39 HOH HOH . 
E 5 HOH A 82 682 35 HOH HOH . 
E 5 HOH A 83 683 11 HOH HOH . 
E 5 HOH A 84 684 96 HOH HOH . 
E 5 HOH A 85 685 57 HOH HOH . 
E 5 HOH A 86 686 165 HOH HOH . 
E 5 HOH A 87 687 133 HOH HOH . 
E 5 HOH A 88 688 176 HOH HOH . 
E 5 HOH A 89 689 92 HOH HOH . 
E 5 HOH A 90 690 55 HOH HOH . 
E 5 HOH A 91 691 26 HOH HOH . 
E 5 HOH A 92 692 6 HOH HOH . 
E 5 HOH A 93 693 172 HOH HOH . 
E 5 HOH A 94 694 125 HOH HOH . 
E 5 HOH A 95 695 193 HOH HOH . 
E 5 HOH A 96 696 182 HOH HOH . 
E 5 HOH A 97 697 155 HOH HOH . 
E 5 HOH A 98 698 127 HOH HOH . 
E 5 HOH A 99 699 135 HOH HOH . 
E 5 HOH A 100 700 66 HOH HOH . 
E 5 HOH A 101 701 138 HOH HOH . 
E 5 HOH A 102 702 205 HOH HOH . 
E 5 HOH A 103 703 100 HOH HOH . 
E 5 HOH A 104 704 54 HOH HOH . 
E 5 HOH A 105 705 25 HOH HOH . 
E 5 HOH A 106 706 17 HOH HOH . 
E 5 HOH A 107 707 36 HOH HOH . 
E 5 HOH A 108 708 160 HOH HOH . 
E 5 HOH A 109 709 65 HOH HOH . 
E 5 HOH A 110 710 145 HOH HOH . 
E 5 HOH A 111 711 29 HOH HOH . 
E 5 HOH A 112 712 61 HOH HOH . 
E 5 HOH A 113 713 110 HOH HOH . 
E 5 HOH A 114 714 80 HOH HOH . 
E 5 HOH A 115 715 58 HOH HOH . 
E 5 HOH A 116 716 134 HOH HOH . 
E 5 HOH A 117 717 38 HOH HOH . 
E 5 HOH A 118 718 60 HOH HOH . 
E 5 HOH A 119 719 131 HOH HOH . 
E 5 HOH A 120 720 129 HOH HOH . 
E 5 HOH A 121 721 82 HOH HOH . 
E 5 HOH A 122 722 106 HOH HOH . 
E 5 HOH A 123 723 41 HOH HOH . 
E 5 HOH A 124 724 197 HOH HOH . 
E 5 HOH A 125 725 76 HOH HOH . 
E 5 HOH A 126 726 166 HOH HOH . 
E 5 HOH A 127 727 146 HOH HOH . 
E 5 HOH A 128 728 104 HOH HOH . 
E 5 HOH A 129 729 111 HOH HOH . 
E 5 HOH A 130 730 83 HOH HOH . 
E 5 HOH A 131 731 169 HOH HOH . 
E 5 HOH A 132 732 87 HOH HOH . 
E 5 HOH A 133 733 75 HOH HOH . 
E 5 HOH A 134 734 161 HOH HOH . 
E 5 HOH A 135 735 185 HOH HOH . 
E 5 HOH A 136 736 103 HOH HOH . 
E 5 HOH A 137 737 108 HOH HOH . 
E 5 HOH A 138 738 195 HOH HOH . 
E 5 HOH A 139 739 148 HOH HOH . 
E 5 HOH A 140 740 151 HOH HOH . 
E 5 HOH A 141 741 123 HOH HOH . 
E 5 HOH A 142 742 89 HOH HOH . 
E 5 HOH A 143 743 144 HOH HOH . 
E 5 HOH A 144 744 188 HOH HOH . 
E 5 HOH A 145 745 187 HOH HOH . 
E 5 HOH A 146 746 113 HOH HOH . 
E 5 HOH A 147 747 147 HOH HOH . 
E 5 HOH A 148 748 189 HOH HOH . 
E 5 HOH A 149 749 194 HOH HOH . 
E 5 HOH A 150 750 170 HOH HOH . 
E 5 HOH A 151 751 186 HOH HOH . 
E 5 HOH A 152 752 84 HOH HOH . 
E 5 HOH A 153 753 116 HOH HOH . 
E 5 HOH A 154 754 45 HOH HOH . 
E 5 HOH A 155 755 117 HOH HOH . 
E 5 HOH A 156 756 139 HOH HOH . 
E 5 HOH A 157 757 181 HOH HOH . 
E 5 HOH A 158 758 128 HOH HOH . 
E 5 HOH A 159 759 51 HOH HOH . 
E 5 HOH A 160 760 122 HOH HOH . 
E 5 HOH A 161 761 70 HOH HOH . 
E 5 HOH A 162 762 140 HOH HOH . 
E 5 HOH A 163 763 179 HOH HOH . 
E 5 HOH A 164 764 153 HOH HOH . 
E 5 HOH A 165 765 174 HOH HOH . 
E 5 HOH A 166 766 73 HOH HOH . 
E 5 HOH A 167 767 175 HOH HOH . 
E 5 HOH A 168 768 105 HOH HOH . 
E 5 HOH A 169 769 199 HOH HOH . 
E 5 HOH A 170 770 136 HOH HOH . 
E 5 HOH A 171 771 53 HOH HOH . 
E 5 HOH A 172 772 78 HOH HOH . 
E 5 HOH A 173 773 177 HOH HOH . 
E 5 HOH A 174 774 114 HOH HOH . 
E 5 HOH A 175 775 130 HOH HOH . 
E 5 HOH A 176 776 101 HOH HOH . 
E 5 HOH A 177 777 86 HOH HOH . 
E 5 HOH A 178 778 120 HOH HOH . 
E 5 HOH A 179 779 62 HOH HOH . 
E 5 HOH A 180 780 150 HOH HOH . 
E 5 HOH A 181 781 118 HOH HOH . 
E 5 HOH A 182 782 162 HOH HOH . 
E 5 HOH A 183 783 79 HOH HOH . 
E 5 HOH A 184 784 109 HOH HOH . 
E 5 HOH A 185 785 137 HOH HOH . 
E 5 HOH A 186 786 168 HOH HOH . 
E 5 HOH A 187 787 50 HOH HOH . 
E 5 HOH A 188 788 159 HOH HOH . 
E 5 HOH A 189 789 156 HOH HOH . 
E 5 HOH A 190 790 203 HOH HOH . 
E 5 HOH A 191 791 178 HOH HOH . 
E 5 HOH A 192 792 198 HOH HOH . 
E 5 HOH A 193 793 180 HOH HOH . 
E 5 HOH A 194 794 173 HOH HOH . 
E 5 HOH A 195 795 13 HOH HOH . 
E 5 HOH A 196 796 31 HOH HOH . 
E 5 HOH A 197 797 102 HOH HOH . 
E 5 HOH A 198 798 88 HOH HOH . 
E 5 HOH A 199 799 91 HOH HOH . 
E 5 HOH A 200 800 183 HOH HOH . 
E 5 HOH A 201 801 141 HOH HOH . 
E 5 HOH A 202 802 184 HOH HOH . 
E 5 HOH A 203 803 200 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD DQW . . . D 4 -1.56 -3.279 -7.75 0.5 20.49 ? CAD DQW 503 A 1 
HETATM 2 C CAB DQW . . . D 4 -1.262 -1.981 -8.465 0.5 20.4 ? CAB DQW 503 A 1 
HETATM 3 O OAA DQW . . . D 4 -0.526 -2.238 -9.644 0.5 12.41 ? OAA DQW 503 A 1 
HETATM 4 C CAC DQW . . . D 4 -0.456 -1.079 -7.558 0.5 19.28 ? CAC DQW 503 A 1 
HETATM 5 O OAE DQW . . . D 4 -0.276 0.153 -8.21 0.5 14.53 ? OAE DQW 503 A 1 
HETATM 6 C CAF DQW . . . D 4 0.6 1.044 -7.563 0.5 18.87 ? CAF DQW 503 A 1 
HETATM 7 C CAG DQW . . . D 4 0.715 2.29 -8.408 0.5 20.57 ? CAG DQW 503 A 1 
HETATM 8 C CAI DQW . . . D 4 1.318 1.925 -9.747 0.5 14.72 ? CAI DQW 503 A 1 
HETATM 9 O OAH DQW . . . D 4 1.55 3.226 -7.771 0.5 20.63 ? OAH DQW 503 A 1 
HETATM 10 H HAG DQW . . . D 4 -2.43 -3.616 -8.037 0.5 24.59 ? HAG DQW 503 A 1 
HETATM 11 H HAE DQW . . . D 4 -1.573 -3.125 -6.787 0.5 24.59 ? HAE DQW 503 A 1 
HETATM 12 H HAF DQW . . . D 4 -0.87 -3.934 -7.966 0.5 24.59 ? HAF DQW 503 A 1 
HETATM 13 H HAB DQW . . . D 4 -2.101 -1.539 -8.697 0.5 24.48 ? HAB DQW 503 A 1 
HETATM 14 H HAA DQW . . . D 4 -0.539 -1.518 -10.164 0.5 14.89 ? HAA DQW 503 A 1 
HETATM 15 H HAC DQW . . . D 4 0.413 -1.485 -7.377 0.5 23.14 ? HAC DQW 503 A 1 
HETATM 16 H HAD DQW . . . D 4 -0.936 -0.941 -6.72 0.5 23.14 ? HAD DQW 503 A 1 
HETATM 17 H HAI DQW . . . D 4 0.245 1.274 -6.683 0.5 22.64 ? HAI DQW 503 A 1 
HETATM 18 H HAH DQW . . . D 4 1.478 0.63 -7.466 0.5 22.64 ? HAH DQW 503 A 1 
HETATM 19 H HAJ DQW . . . D 4 -0.17 2.679 -8.542 0.5 24.68 ? HAJ DQW 503 A 1 
HETATM 20 H HAL DQW . . . D 4 2.257 1.689 -9.627 0.5 17.66 ? HAL DQW 503 A 1 
HETATM 21 H HAM DQW . . . D 4 1.248 2.686 -10.354 0.5 17.66 ? HAM DQW 503 A 1 
HETATM 22 H HAK DQW . . . D 4 0.837 1.163 -10.123 0.5 17.66 ? HAK DQW 503 A 1 
HETATM 23 H HAN DQW . . . D 4 1.274 3.349 -6.936 0.5 24.75 ? HAN DQW 503 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#