data_5O3D
#
_model_server_result.job_id            y_Zq1VD8TCY7qW_AhpFaqw 
_model_server_result.datetime_utc      '2024-11-28 19:26:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o3d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5O3D 
#
_exptl.entry_id    5O3D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5O3D 
_cell.length_a            52.407 
_cell.length_b            71.83 
_cell.length_c            32.003 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O3D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O3' 
_chem_comp.formula_weight    134.174 
_chem_comp.id                DQW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAI CAG DQW sing 140 n n 
OAA CAB DQW sing 141 n n 
CAB CAD DQW sing 142 n n 
CAB CAC DQW sing 143 n n 
CAG OAH DQW sing 144 n n 
CAG CAF DQW sing 145 n n 
OAE CAC DQW sing 146 n n 
OAE CAF DQW sing 147 n n 
CAD HAG DQW sing 148 n n 
CAD HAE DQW sing 149 n n 
CAD HAF DQW sing 150 n n 
CAB HAB DQW sing 151 n n 
OAA HAA DQW sing 152 n n 
CAC HAC DQW sing 153 n n 
CAC HAD DQW sing 154 n n 
CAF HAI DQW sing 155 n n 
CAF HAH DQW sing 156 n n 
CAG HAJ DQW sing 157 n n 
CAI HAL DQW sing 158 n n 
CAI HAM DQW sing 159 n n 
CAI HAK DQW sing 160 n n 
OAH HAN DQW sing 161 n n 
#
_atom_sites.entry_id                     5O3D 
_atom_sites.fract_transf_matrix[1][1]    0.019081 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031247 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9J5 A 1 501 1 9J5 9ET . 
C 3 CL A 1 502 1 CL CL . 
D 4 DQW A 1 503 1 DQW DPG . 
E 5 HOH A 1 601 221 HOH HOH . 
E 5 HOH A 2 602 226 HOH HOH . 
E 5 HOH A 3 603 138 HOH HOH . 
E 5 HOH A 4 604 217 HOH HOH . 
E 5 HOH A 5 605 168 HOH HOH . 
E 5 HOH A 6 606 185 HOH HOH . 
E 5 HOH A 7 607 201 HOH HOH . 
E 5 HOH A 8 608 154 HOH HOH . 
E 5 HOH A 9 609 135 HOH HOH . 
E 5 HOH A 10 610 52 HOH HOH . 
E 5 HOH A 11 611 175 HOH HOH . 
E 5 HOH A 12 612 228 HOH HOH . 
E 5 HOH A 13 613 81 HOH HOH . 
E 5 HOH A 14 614 45 HOH HOH . 
E 5 HOH A 15 615 143 HOH HOH . 
E 5 HOH A 16 616 153 HOH HOH . 
E 5 HOH A 17 617 125 HOH HOH . 
E 5 HOH A 18 618 100 HOH HOH . 
E 5 HOH A 19 619 6 HOH HOH . 
E 5 HOH A 20 620 18 HOH HOH . 
E 5 HOH A 21 621 56 HOH HOH . 
E 5 HOH A 22 622 200 HOH HOH . 
E 5 HOH A 23 623 9 HOH HOH . 
E 5 HOH A 24 624 141 HOH HOH . 
E 5 HOH A 25 625 27 HOH HOH . 
E 5 HOH A 26 626 2 HOH HOH . 
E 5 HOH A 27 627 90 HOH HOH . 
E 5 HOH A 28 628 126 HOH HOH . 
E 5 HOH A 29 629 69 HOH HOH . 
E 5 HOH A 30 630 30 HOH HOH . 
E 5 HOH A 31 631 140 HOH HOH . 
E 5 HOH A 32 632 122 HOH HOH . 
E 5 HOH A 33 633 8 HOH HOH . 
E 5 HOH A 34 634 17 HOH HOH . 
E 5 HOH A 35 635 183 HOH HOH . 
E 5 HOH A 36 636 5 HOH HOH . 
E 5 HOH A 37 637 40 HOH HOH . 
E 5 HOH A 38 638 48 HOH HOH . 
E 5 HOH A 39 639 15 HOH HOH . 
E 5 HOH A 40 640 59 HOH HOH . 
E 5 HOH A 41 641 192 HOH HOH . 
E 5 HOH A 42 642 66 HOH HOH . 
E 5 HOH A 43 643 106 HOH HOH . 
E 5 HOH A 44 644 87 HOH HOH . 
E 5 HOH A 45 645 42 HOH HOH . 
E 5 HOH A 46 646 26 HOH HOH . 
E 5 HOH A 47 647 25 HOH HOH . 
E 5 HOH A 48 648 31 HOH HOH . 
E 5 HOH A 49 649 20 HOH HOH . 
E 5 HOH A 50 650 53 HOH HOH . 
E 5 HOH A 51 651 162 HOH HOH . 
E 5 HOH A 52 652 24 HOH HOH . 
E 5 HOH A 53 653 64 HOH HOH . 
E 5 HOH A 54 654 130 HOH HOH . 
E 5 HOH A 55 655 7 HOH HOH . 
E 5 HOH A 56 656 119 HOH HOH . 
E 5 HOH A 57 657 16 HOH HOH . 
E 5 HOH A 58 658 93 HOH HOH . 
E 5 HOH A 59 659 179 HOH HOH . 
E 5 HOH A 60 660 3 HOH HOH . 
E 5 HOH A 61 661 35 HOH HOH . 
E 5 HOH A 62 662 142 HOH HOH . 
E 5 HOH A 63 663 85 HOH HOH . 
E 5 HOH A 64 664 75 HOH HOH . 
E 5 HOH A 65 665 78 HOH HOH . 
E 5 HOH A 66 666 54 HOH HOH . 
E 5 HOH A 67 667 36 HOH HOH . 
E 5 HOH A 68 668 173 HOH HOH . 
E 5 HOH A 69 669 174 HOH HOH . 
E 5 HOH A 70 670 10 HOH HOH . 
E 5 HOH A 71 671 62 HOH HOH . 
E 5 HOH A 72 672 137 HOH HOH . 
E 5 HOH A 73 673 43 HOH HOH . 
E 5 HOH A 74 674 207 HOH HOH . 
E 5 HOH A 75 675 123 HOH HOH . 
E 5 HOH A 76 676 227 HOH HOH . 
E 5 HOH A 77 677 136 HOH HOH . 
E 5 HOH A 78 678 215 HOH HOH . 
E 5 HOH A 79 679 229 HOH HOH . 
E 5 HOH A 80 680 97 HOH HOH . 
E 5 HOH A 81 681 121 HOH HOH . 
E 5 HOH A 82 682 12 HOH HOH . 
E 5 HOH A 83 683 65 HOH HOH . 
E 5 HOH A 84 684 83 HOH HOH . 
E 5 HOH A 85 685 134 HOH HOH . 
E 5 HOH A 86 686 107 HOH HOH . 
E 5 HOH A 87 687 190 HOH HOH . 
E 5 HOH A 88 688 33 HOH HOH . 
E 5 HOH A 89 689 13 HOH HOH . 
E 5 HOH A 90 690 171 HOH HOH . 
E 5 HOH A 91 691 189 HOH HOH . 
E 5 HOH A 92 692 151 HOH HOH . 
E 5 HOH A 93 693 155 HOH HOH . 
E 5 HOH A 94 694 109 HOH HOH . 
E 5 HOH A 95 695 23 HOH HOH . 
E 5 HOH A 96 696 98 HOH HOH . 
E 5 HOH A 97 697 172 HOH HOH . 
E 5 HOH A 98 698 209 HOH HOH . 
E 5 HOH A 99 699 32 HOH HOH . 
E 5 HOH A 100 700 14 HOH HOH . 
E 5 HOH A 101 701 88 HOH HOH . 
E 5 HOH A 102 702 21 HOH HOH . 
E 5 HOH A 103 703 177 HOH HOH . 
E 5 HOH A 104 704 73 HOH HOH . 
E 5 HOH A 105 705 19 HOH HOH . 
E 5 HOH A 106 706 11 HOH HOH . 
E 5 HOH A 107 707 219 HOH HOH . 
E 5 HOH A 108 708 28 HOH HOH . 
E 5 HOH A 109 709 129 HOH HOH . 
E 5 HOH A 110 710 103 HOH HOH . 
E 5 HOH A 111 711 34 HOH HOH . 
E 5 HOH A 112 712 223 HOH HOH . 
E 5 HOH A 113 713 165 HOH HOH . 
E 5 HOH A 114 714 4 HOH HOH . 
E 5 HOH A 115 715 57 HOH HOH . 
E 5 HOH A 116 716 164 HOH HOH . 
E 5 HOH A 117 717 29 HOH HOH . 
E 5 HOH A 118 718 50 HOH HOH . 
E 5 HOH A 119 719 49 HOH HOH . 
E 5 HOH A 120 720 214 HOH HOH . 
E 5 HOH A 121 721 105 HOH HOH . 
E 5 HOH A 122 722 150 HOH HOH . 
E 5 HOH A 123 723 111 HOH HOH . 
E 5 HOH A 124 724 60 HOH HOH . 
E 5 HOH A 125 725 117 HOH HOH . 
E 5 HOH A 126 726 112 HOH HOH . 
E 5 HOH A 127 727 188 HOH HOH . 
E 5 HOH A 128 728 67 HOH HOH . 
E 5 HOH A 129 729 61 HOH HOH . 
E 5 HOH A 130 730 94 HOH HOH . 
E 5 HOH A 131 731 156 HOH HOH . 
E 5 HOH A 132 732 39 HOH HOH . 
E 5 HOH A 133 733 44 HOH HOH . 
E 5 HOH A 134 734 84 HOH HOH . 
E 5 HOH A 135 735 198 HOH HOH . 
E 5 HOH A 136 736 46 HOH HOH . 
E 5 HOH A 137 737 79 HOH HOH . 
E 5 HOH A 138 738 51 HOH HOH . 
E 5 HOH A 139 739 91 HOH HOH . 
E 5 HOH A 140 740 71 HOH HOH . 
E 5 HOH A 141 741 152 HOH HOH . 
E 5 HOH A 142 742 222 HOH HOH . 
E 5 HOH A 143 743 124 HOH HOH . 
E 5 HOH A 144 744 70 HOH HOH . 
E 5 HOH A 145 745 80 HOH HOH . 
E 5 HOH A 146 746 195 HOH HOH . 
E 5 HOH A 147 747 118 HOH HOH . 
E 5 HOH A 148 748 169 HOH HOH . 
E 5 HOH A 149 749 220 HOH HOH . 
E 5 HOH A 150 750 82 HOH HOH . 
E 5 HOH A 151 751 199 HOH HOH . 
E 5 HOH A 152 752 225 HOH HOH . 
E 5 HOH A 153 753 133 HOH HOH . 
E 5 HOH A 154 754 205 HOH HOH . 
E 5 HOH A 155 755 55 HOH HOH . 
E 5 HOH A 156 756 92 HOH HOH . 
E 5 HOH A 157 757 186 HOH HOH . 
E 5 HOH A 158 758 146 HOH HOH . 
E 5 HOH A 159 759 89 HOH HOH . 
E 5 HOH A 160 760 176 HOH HOH . 
E 5 HOH A 161 761 41 HOH HOH . 
E 5 HOH A 162 762 184 HOH HOH . 
E 5 HOH A 163 763 167 HOH HOH . 
E 5 HOH A 164 764 206 HOH HOH . 
E 5 HOH A 165 765 120 HOH HOH . 
E 5 HOH A 166 766 180 HOH HOH . 
E 5 HOH A 167 767 37 HOH HOH . 
E 5 HOH A 168 768 212 HOH HOH . 
E 5 HOH A 169 769 144 HOH HOH . 
E 5 HOH A 170 770 47 HOH HOH . 
E 5 HOH A 171 771 149 HOH HOH . 
E 5 HOH A 172 772 170 HOH HOH . 
E 5 HOH A 173 773 161 HOH HOH . 
E 5 HOH A 174 774 158 HOH HOH . 
E 5 HOH A 175 775 99 HOH HOH . 
E 5 HOH A 176 776 131 HOH HOH . 
E 5 HOH A 177 777 159 HOH HOH . 
E 5 HOH A 178 778 203 HOH HOH . 
E 5 HOH A 179 779 38 HOH HOH . 
E 5 HOH A 180 780 113 HOH HOH . 
E 5 HOH A 181 781 163 HOH HOH . 
E 5 HOH A 182 782 68 HOH HOH . 
E 5 HOH A 183 783 210 HOH HOH . 
E 5 HOH A 184 784 128 HOH HOH . 
E 5 HOH A 185 785 178 HOH HOH . 
E 5 HOH A 186 786 187 HOH HOH . 
E 5 HOH A 187 787 114 HOH HOH . 
E 5 HOH A 188 788 86 HOH HOH . 
E 5 HOH A 189 789 96 HOH HOH . 
E 5 HOH A 190 790 160 HOH HOH . 
E 5 HOH A 191 791 191 HOH HOH . 
E 5 HOH A 192 792 148 HOH HOH . 
E 5 HOH A 193 793 132 HOH HOH . 
E 5 HOH A 194 794 182 HOH HOH . 
E 5 HOH A 195 795 181 HOH HOH . 
E 5 HOH A 196 796 147 HOH HOH . 
E 5 HOH A 197 797 127 HOH HOH . 
E 5 HOH A 198 798 63 HOH HOH . 
E 5 HOH A 199 799 218 HOH HOH . 
E 5 HOH A 200 800 76 HOH HOH . 
E 5 HOH A 201 801 116 HOH HOH . 
E 5 HOH A 202 802 213 HOH HOH . 
E 5 HOH A 203 803 157 HOH HOH . 
E 5 HOH A 204 804 224 HOH HOH . 
E 5 HOH A 205 805 108 HOH HOH . 
E 5 HOH A 206 806 115 HOH HOH . 
E 5 HOH A 207 807 74 HOH HOH . 
E 5 HOH A 208 808 145 HOH HOH . 
E 5 HOH A 209 809 58 HOH HOH . 
E 5 HOH A 210 810 22 HOH HOH . 
E 5 HOH A 211 811 101 HOH HOH . 
E 5 HOH A 212 812 95 HOH HOH . 
E 5 HOH A 213 813 77 HOH HOH . 
E 5 HOH A 214 814 104 HOH HOH . 
E 5 HOH A 215 815 211 HOH HOH . 
E 5 HOH A 216 816 166 HOH HOH . 
E 5 HOH A 217 817 216 HOH HOH . 
E 5 HOH A 218 818 139 HOH HOH . 
E 5 HOH A 219 819 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD DQW . . . D 4 -1.603 75.08 7.806 0.5 20.7 ? CAD DQW 503 A 1 
HETATM 2 C CAB DQW . . . D 4 -1.313 73.766 8.493 0.5 20.42 ? CAB DQW 503 A 1 
HETATM 3 O OAA DQW . . . D 4 -0.656 74.012 9.718 0.5 20.68 ? OAA DQW 503 A 1 
HETATM 4 C CAC DQW . . . D 4 -0.433 72.906 7.613 0.5 18.82 ? CAC DQW 503 A 1 
HETATM 5 O OAE DQW . . . D 4 -0.148 71.721 8.313 0.5 22.69 ? OAE DQW 503 A 1 
HETATM 6 C CAF DQW . . . D 4 0.658 70.784 7.64 0.5 18.78 ? CAF DQW 503 A 1 
HETATM 7 C CAG DQW . . . D 4 0.732 69.529 8.481 0.5 23.14 ? CAG DQW 503 A 1 
HETATM 8 C CAI DQW . . . D 4 1.298 69.856 9.847 0.5 14.62 ? CAI DQW 503 A 1 
HETATM 9 O OAH DQW . . . D 4 1.568 68.591 7.849 0.5 20.82 ? OAH DQW 503 A 1 
HETATM 10 H HAG DQW . . . D 4 -2.475 75.412 8.094 0.5 24.83 ? HAG DQW 503 A 1 
HETATM 11 H HAE DQW . . . D 4 -1.608 74.948 6.839 0.5 24.83 ? HAE DQW 503 A 1 
HETATM 12 H HAF DQW . . . D 4 -0.913 75.729 8.043 0.5 24.83 ? HAF DQW 503 A 1 
HETATM 13 H HAB DQW . . . D 4 -2.153 73.299 8.664 0.5 24.5 ? HAB DQW 503 A 1 
HETATM 14 H HAA DQW . . . D 4 -0.592 73.255 10.176 0.5 24.82 ? HAA DQW 503 A 1 
HETATM 15 H HAC DQW . . . D 4 0.397 73.379 7.413 0.5 22.59 ? HAC DQW 503 A 1 
HETATM 16 H HAD DQW . . . D 4 -0.901 72.695 6.783 0.5 22.59 ? HAD DQW 503 A 1 
HETATM 17 H HAI DQW . . . D 4 0.265 70.576 6.772 0.5 22.54 ? HAI DQW 503 A 1 
HETATM 18 H HAH DQW . . . D 4 1.554 71.151 7.517 0.5 22.54 ? HAH DQW 503 A 1 
HETATM 19 H HAJ DQW . . . D 4 -0.162 69.151 8.581 0.5 27.77 ? HAJ DQW 503 A 1 
HETATM 20 H HAL DQW . . . D 4 2.256 70.025 9.771 0.5 17.54 ? HAL DQW 503 A 1 
HETATM 21 H HAM DQW . . . D 4 1.147 69.104 10.451 0.5 17.54 ? HAM DQW 503 A 1 
HETATM 22 H HAK DQW . . . D 4 0.854 70.65 10.201 0.5 17.54 ? HAK DQW 503 A 1 
HETATM 23 H HAN DQW . . . D 4 1.314 68.49 7.004 0.5 24.99 ? HAN DQW 503 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#