data_5O3E # _model_server_result.job_id ixzKyAQa_bI-8Z40Z0j41A _model_server_result.datetime_utc '2024-11-17 03:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5O3E # _exptl.entry_id 5O3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O3E _cell.length_a 52.177 _cell.length_b 71.95 _cell.length_c 31.917 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O3' _chem_comp.formula_weight 134.174 _chem_comp.id DQW _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAG DQW sing 141 n n OAA CAB DQW sing 142 n n CAB CAD DQW sing 143 n n CAB CAC DQW sing 144 n n CAG OAH DQW sing 145 n n CAG CAF DQW sing 146 n n OAE CAC DQW sing 147 n n OAE CAF DQW sing 148 n n CAD HAG DQW sing 149 n n CAD HAE DQW sing 150 n n CAD HAF DQW sing 151 n n CAB HAB DQW sing 152 n n OAA HAA DQW sing 153 n n CAC HAC DQW sing 154 n n CAC HAD DQW sing 155 n n CAF HAI DQW sing 156 n n CAF HAH DQW sing 157 n n CAG HAJ DQW sing 158 n n CAI HAL DQW sing 159 n n CAI HAM DQW sing 160 n n CAI HAK DQW sing 161 n n OAH HAN DQW sing 162 n n # _atom_sites.entry_id 5O3E _atom_sites.fract_transf_matrix[1][1] 0.019165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9HW A 1 501 1 9HW MEA . C 3 CL A 1 502 1 CL CL . D 4 DQW A 1 503 1 DQW DPG . E 5 HOH A 1 601 38 HOH HOH . E 5 HOH A 2 602 173 HOH HOH . E 5 HOH A 3 603 186 HOH HOH . E 5 HOH A 4 604 163 HOH HOH . E 5 HOH A 5 605 150 HOH HOH . E 5 HOH A 6 606 55 HOH HOH . E 5 HOH A 7 607 218 HOH HOH . E 5 HOH A 8 608 206 HOH HOH . E 5 HOH A 9 609 137 HOH HOH . E 5 HOH A 10 610 165 HOH HOH . E 5 HOH A 11 611 180 HOH HOH . E 5 HOH A 12 612 2 HOH HOH . E 5 HOH A 13 613 97 HOH HOH . E 5 HOH A 14 614 178 HOH HOH . E 5 HOH A 15 615 11 HOH HOH . E 5 HOH A 16 616 130 HOH HOH . E 5 HOH A 17 617 72 HOH HOH . E 5 HOH A 18 618 108 HOH HOH . E 5 HOH A 19 619 6 HOH HOH . E 5 HOH A 20 620 27 HOH HOH . E 5 HOH A 21 621 76 HOH HOH . E 5 HOH A 22 622 13 HOH HOH . E 5 HOH A 23 623 167 HOH HOH . E 5 HOH A 24 624 116 HOH HOH . E 5 HOH A 25 625 89 HOH HOH . E 5 HOH A 26 626 53 HOH HOH . E 5 HOH A 27 627 40 HOH HOH . E 5 HOH A 28 628 92 HOH HOH . E 5 HOH A 29 629 145 HOH HOH . E 5 HOH A 30 630 45 HOH HOH . E 5 HOH A 31 631 88 HOH HOH . E 5 HOH A 32 632 3 HOH HOH . E 5 HOH A 33 633 142 HOH HOH . E 5 HOH A 34 634 30 HOH HOH . E 5 HOH A 35 635 93 HOH HOH . E 5 HOH A 36 636 39 HOH HOH . E 5 HOH A 37 637 63 HOH HOH . E 5 HOH A 38 638 101 HOH HOH . E 5 HOH A 39 639 147 HOH HOH . E 5 HOH A 40 640 32 HOH HOH . E 5 HOH A 41 641 75 HOH HOH . E 5 HOH A 42 642 14 HOH HOH . E 5 HOH A 43 643 110 HOH HOH . E 5 HOH A 44 644 34 HOH HOH . E 5 HOH A 45 645 49 HOH HOH . E 5 HOH A 46 646 7 HOH HOH . E 5 HOH A 47 647 26 HOH HOH . E 5 HOH A 48 648 9 HOH HOH . E 5 HOH A 49 649 121 HOH HOH . E 5 HOH A 50 650 18 HOH HOH . E 5 HOH A 51 651 131 HOH HOH . E 5 HOH A 52 652 33 HOH HOH . E 5 HOH A 53 653 8 HOH HOH . E 5 HOH A 54 654 71 HOH HOH . E 5 HOH A 55 655 35 HOH HOH . E 5 HOH A 56 656 197 HOH HOH . E 5 HOH A 57 657 100 HOH HOH . E 5 HOH A 58 658 28 HOH HOH . E 5 HOH A 59 659 48 HOH HOH . E 5 HOH A 60 660 127 HOH HOH . E 5 HOH A 61 661 4 HOH HOH . E 5 HOH A 62 662 42 HOH HOH . E 5 HOH A 63 663 74 HOH HOH . E 5 HOH A 64 664 91 HOH HOH . E 5 HOH A 65 665 15 HOH HOH . E 5 HOH A 66 666 84 HOH HOH . E 5 HOH A 67 667 21 HOH HOH . E 5 HOH A 68 668 79 HOH HOH . E 5 HOH A 69 669 60 HOH HOH . E 5 HOH A 70 670 1 HOH HOH . E 5 HOH A 71 671 10 HOH HOH . E 5 HOH A 72 672 181 HOH HOH . E 5 HOH A 73 673 107 HOH HOH . E 5 HOH A 74 674 24 HOH HOH . E 5 HOH A 75 675 16 HOH HOH . E 5 HOH A 76 676 111 HOH HOH . E 5 HOH A 77 677 132 HOH HOH . E 5 HOH A 78 678 155 HOH HOH . E 5 HOH A 79 679 65 HOH HOH . E 5 HOH A 80 680 83 HOH HOH . E 5 HOH A 81 681 73 HOH HOH . E 5 HOH A 82 682 104 HOH HOH . E 5 HOH A 83 683 182 HOH HOH . E 5 HOH A 84 684 140 HOH HOH . E 5 HOH A 85 685 102 HOH HOH . E 5 HOH A 86 686 217 HOH HOH . E 5 HOH A 87 687 19 HOH HOH . E 5 HOH A 88 688 81 HOH HOH . E 5 HOH A 89 689 25 HOH HOH . E 5 HOH A 90 690 43 HOH HOH . E 5 HOH A 91 691 161 HOH HOH . E 5 HOH A 92 692 133 HOH HOH . E 5 HOH A 93 693 29 HOH HOH . E 5 HOH A 94 694 46 HOH HOH . E 5 HOH A 95 695 17 HOH HOH . E 5 HOH A 96 696 23 HOH HOH . E 5 HOH A 97 697 152 HOH HOH . E 5 HOH A 98 698 70 HOH HOH . E 5 HOH A 99 699 69 HOH HOH . E 5 HOH A 100 700 12 HOH HOH . E 5 HOH A 101 701 95 HOH HOH . E 5 HOH A 102 702 37 HOH HOH . E 5 HOH A 103 703 82 HOH HOH . E 5 HOH A 104 704 5 HOH HOH . E 5 HOH A 105 705 201 HOH HOH . E 5 HOH A 106 706 115 HOH HOH . E 5 HOH A 107 707 61 HOH HOH . E 5 HOH A 108 708 138 HOH HOH . E 5 HOH A 109 709 80 HOH HOH . E 5 HOH A 110 710 105 HOH HOH . E 5 HOH A 111 711 176 HOH HOH . E 5 HOH A 112 712 136 HOH HOH . E 5 HOH A 113 713 50 HOH HOH . E 5 HOH A 114 714 57 HOH HOH . E 5 HOH A 115 715 190 HOH HOH . E 5 HOH A 116 716 44 HOH HOH . E 5 HOH A 117 717 41 HOH HOH . E 5 HOH A 118 718 112 HOH HOH . E 5 HOH A 119 719 58 HOH HOH . E 5 HOH A 120 720 86 HOH HOH . E 5 HOH A 121 721 148 HOH HOH . E 5 HOH A 122 722 47 HOH HOH . E 5 HOH A 123 723 54 HOH HOH . E 5 HOH A 124 724 169 HOH HOH . E 5 HOH A 125 725 22 HOH HOH . E 5 HOH A 126 726 123 HOH HOH . E 5 HOH A 127 727 114 HOH HOH . E 5 HOH A 128 728 66 HOH HOH . E 5 HOH A 129 729 204 HOH HOH . E 5 HOH A 130 730 85 HOH HOH . E 5 HOH A 131 731 196 HOH HOH . E 5 HOH A 132 732 135 HOH HOH . E 5 HOH A 133 733 170 HOH HOH . E 5 HOH A 134 734 119 HOH HOH . E 5 HOH A 135 735 210 HOH HOH . E 5 HOH A 136 736 154 HOH HOH . E 5 HOH A 137 737 98 HOH HOH . E 5 HOH A 138 738 191 HOH HOH . E 5 HOH A 139 739 139 HOH HOH . E 5 HOH A 140 740 198 HOH HOH . E 5 HOH A 141 741 78 HOH HOH . E 5 HOH A 142 742 106 HOH HOH . E 5 HOH A 143 743 87 HOH HOH . E 5 HOH A 144 744 208 HOH HOH . E 5 HOH A 145 745 187 HOH HOH . E 5 HOH A 146 746 211 HOH HOH . E 5 HOH A 147 747 36 HOH HOH . E 5 HOH A 148 748 212 HOH HOH . E 5 HOH A 149 749 207 HOH HOH . E 5 HOH A 150 750 177 HOH HOH . E 5 HOH A 151 751 67 HOH HOH . E 5 HOH A 152 752 188 HOH HOH . E 5 HOH A 153 753 56 HOH HOH . E 5 HOH A 154 754 20 HOH HOH . E 5 HOH A 155 755 117 HOH HOH . E 5 HOH A 156 756 146 HOH HOH . E 5 HOH A 157 757 158 HOH HOH . E 5 HOH A 158 758 164 HOH HOH . E 5 HOH A 159 759 184 HOH HOH . E 5 HOH A 160 760 193 HOH HOH . E 5 HOH A 161 761 159 HOH HOH . E 5 HOH A 162 762 134 HOH HOH . E 5 HOH A 163 763 183 HOH HOH . E 5 HOH A 164 764 179 HOH HOH . E 5 HOH A 165 765 203 HOH HOH . E 5 HOH A 166 766 202 HOH HOH . E 5 HOH A 167 767 214 HOH HOH . E 5 HOH A 168 768 157 HOH HOH . E 5 HOH A 169 769 156 HOH HOH . E 5 HOH A 170 770 59 HOH HOH . E 5 HOH A 171 771 124 HOH HOH . E 5 HOH A 172 772 172 HOH HOH . E 5 HOH A 173 773 195 HOH HOH . E 5 HOH A 174 774 151 HOH HOH . E 5 HOH A 175 775 99 HOH HOH . E 5 HOH A 176 776 213 HOH HOH . E 5 HOH A 177 777 64 HOH HOH . E 5 HOH A 178 778 68 HOH HOH . E 5 HOH A 179 779 160 HOH HOH . E 5 HOH A 180 780 122 HOH HOH . E 5 HOH A 181 781 189 HOH HOH . E 5 HOH A 182 782 94 HOH HOH . E 5 HOH A 183 783 153 HOH HOH . E 5 HOH A 184 784 129 HOH HOH . E 5 HOH A 185 785 162 HOH HOH . E 5 HOH A 186 786 149 HOH HOH . E 5 HOH A 187 787 141 HOH HOH . E 5 HOH A 188 788 175 HOH HOH . E 5 HOH A 189 789 103 HOH HOH . E 5 HOH A 190 790 52 HOH HOH . E 5 HOH A 191 791 77 HOH HOH . E 5 HOH A 192 792 118 HOH HOH . E 5 HOH A 193 793 128 HOH HOH . E 5 HOH A 194 794 185 HOH HOH . E 5 HOH A 195 795 125 HOH HOH . E 5 HOH A 196 796 126 HOH HOH . E 5 HOH A 197 797 113 HOH HOH . E 5 HOH A 198 798 31 HOH HOH . E 5 HOH A 199 799 90 HOH HOH . E 5 HOH A 200 800 120 HOH HOH . E 5 HOH A 201 801 215 HOH HOH . E 5 HOH A 202 802 109 HOH HOH . E 5 HOH A 203 803 51 HOH HOH . E 5 HOH A 204 804 168 HOH HOH . E 5 HOH A 205 805 174 HOH HOH . E 5 HOH A 206 806 96 HOH HOH . E 5 HOH A 207 807 171 HOH HOH . E 5 HOH A 208 808 209 HOH HOH . E 5 HOH A 209 809 166 HOH HOH . E 5 HOH A 210 810 205 HOH HOH . E 5 HOH A 211 811 199 HOH HOH . E 5 HOH A 212 812 62 HOH HOH . E 5 HOH A 213 813 144 HOH HOH . E 5 HOH A 214 814 200 HOH HOH . E 5 HOH A 215 815 194 HOH HOH . E 5 HOH A 216 816 216 HOH HOH . E 5 HOH A 217 817 143 HOH HOH . E 5 HOH A 218 818 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD DQW . . . D 4 -1.312 3.297 7.813 0.46 22.97 ? CAD DQW 503 A 1 HETATM 2 C CAB DQW . . . D 4 -1.206 1.937 8.463 0.46 22.03 ? CAB DQW 503 A 1 HETATM 3 O OAA DQW . . . D 4 -0.785 2.078 9.801 0.46 21.73 ? OAA DQW 503 A 1 HETATM 4 C CAC DQW . . . D 4 -0.197 1.101 7.708 0.46 21.81 ? CAC DQW 503 A 1 HETATM 5 O OAE DQW . . . D 4 -0.234 -0.219 8.192 0.46 21.49 ? OAE DQW 503 A 1 HETATM 6 C CAF DQW . . . D 4 0.82 -1.038 7.747 0.46 21.52 ? CAF DQW 503 A 1 HETATM 7 C CAG DQW . . . D 4 0.724 -2.376 8.442 0.46 21.63 ? CAG DQW 503 A 1 HETATM 8 C CAI DQW . . . D 4 0.934 -2.172 9.923 0.46 21.07 ? CAI DQW 503 A 1 HETATM 9 O OAH DQW . . . D 4 1.712 -3.249 7.951 0.46 22.28 ? OAH DQW 503 A 1 HETATM 10 H HAG DQW . . . D 4 -1.985 3.829 8.278 0.46 27.56 ? HAG DQW 503 A 1 HETATM 11 H HAE DQW . . . D 4 -1.57 3.192 6.877 0.46 27.56 ? HAE DQW 503 A 1 HETATM 12 H HAF DQW . . . D 4 -0.448 3.75 7.862 0.46 27.56 ? HAF DQW 503 A 1 HETATM 13 H HAB DQW . . . D 4 -2.076 1.496 8.44 0.46 26.43 ? HAB DQW 503 A 1 HETATM 14 H HAA DQW . . . D 4 -0.425 1.316 10.08 0.46 26.08 ? HAA DQW 503 A 1 HETATM 15 H HAC DQW . . . D 4 0.696 1.472 7.837 0.46 26.18 ? HAC DQW 503 A 1 HETATM 16 H HAD DQW . . . D 4 -0.417 1.106 6.757 0.46 26.18 ? HAD DQW 503 A 1 HETATM 17 H HAI DQW . . . D 4 0.751 -1.164 6.781 0.46 25.82 ? HAI DQW 503 A 1 HETATM 18 H HAH DQW . . . D 4 1.674 -0.618 7.962 0.46 25.82 ? HAH DQW 503 A 1 HETATM 19 H HAJ DQW . . . D 4 -0.159 -2.761 8.287 0.46 25.96 ? HAJ DQW 503 A 1 HETATM 20 H HAL DQW . . . D 4 1.09 -1.226 10.102 0.46 25.28 ? HAL DQW 503 A 1 HETATM 21 H HAM DQW . . . D 4 1.708 -2.691 10.216 0.46 25.28 ? HAM DQW 503 A 1 HETATM 22 H HAK DQW . . . D 4 0.141 -2.469 10.408 0.46 25.28 ? HAK DQW 503 A 1 HETATM 23 H HAN DQW . . . D 4 1.718 -3.992 8.438 0.46 26.74 ? HAN DQW 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #