data_5O42 # _model_server_result.job_id 94j3NjzojTK-bcY7Q0AL1g _model_server_result.datetime_utc '2024-11-15 03:08:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5O42 # _exptl.entry_id 5O42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O42 _cell.length_a 91.461 _cell.length_b 91.461 _cell.length_c 133.087 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.461 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.461 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc2 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 C NA NA . A NA 302 1_555 F O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc6 C NA NA . A NA 302 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 C NA NA . A NA 302 1_555 F O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 109 n n C2 C1 BGC sing 110 n n C2 O2 BGC sing 111 n n C2 H2 BGC sing 112 n n C3 C4 BGC sing 113 n n C3 O3 BGC sing 114 n n C3 H3 BGC sing 115 n n C4 C5 BGC sing 116 n n C4 O4 BGC sing 117 n n C4 H4 BGC sing 118 n n C5 C6 BGC sing 119 n n C5 O5 BGC sing 120 n n C5 H5 BGC sing 121 n n C6 O6 BGC sing 122 n n C6 H61 BGC sing 123 n n C6 H62 BGC sing 124 n n C1 O1 BGC sing 125 n n C1 O5 BGC sing 126 n n C1 H1 BGC sing 127 n n O1 HO1 BGC sing 128 n n O2 HO2 BGC sing 129 n n O3 HO3 BGC sing 130 n n O4 HO4 BGC sing 131 n n O6 HO6 BGC sing 132 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5O42 _atom_sites.fract_transf_matrix[1][1] 0.010934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 NA A 1 302 1 NA NA . D 4 BGC A 1 303 1 BGC XXX . E 5 9JW A 1 304 1 9JW 202 . F 6 HOH A 1 401 168 HOH HOH . F 6 HOH A 2 402 231 HOH HOH . F 6 HOH A 3 403 186 HOH HOH . F 6 HOH A 4 404 56 HOH HOH . F 6 HOH A 5 405 244 HOH HOH . F 6 HOH A 6 406 197 HOH HOH . F 6 HOH A 7 407 221 HOH HOH . F 6 HOH A 8 408 49 HOH HOH . F 6 HOH A 9 409 20 HOH HOH . F 6 HOH A 10 410 61 HOH HOH . F 6 HOH A 11 411 57 HOH HOH . F 6 HOH A 12 412 75 HOH HOH . F 6 HOH A 13 413 162 HOH HOH . F 6 HOH A 14 414 178 HOH HOH . F 6 HOH A 15 415 8 HOH HOH . F 6 HOH A 16 416 66 HOH HOH . F 6 HOH A 17 417 101 HOH HOH . F 6 HOH A 18 418 114 HOH HOH . F 6 HOH A 19 419 1 HOH HOH . F 6 HOH A 20 420 9 HOH HOH . F 6 HOH A 21 421 199 HOH HOH . F 6 HOH A 22 422 81 HOH HOH . F 6 HOH A 23 423 41 HOH HOH . F 6 HOH A 24 424 129 HOH HOH . F 6 HOH A 25 425 83 HOH HOH . F 6 HOH A 26 426 278 HOH HOH . F 6 HOH A 27 427 238 HOH HOH . F 6 HOH A 28 428 108 HOH HOH . F 6 HOH A 29 429 16 HOH HOH . F 6 HOH A 30 430 65 HOH HOH . F 6 HOH A 31 431 96 HOH HOH . F 6 HOH A 32 432 4 HOH HOH . F 6 HOH A 33 433 105 HOH HOH . F 6 HOH A 34 434 47 HOH HOH . F 6 HOH A 35 435 29 HOH HOH . F 6 HOH A 36 436 63 HOH HOH . F 6 HOH A 37 437 5 HOH HOH . F 6 HOH A 38 438 19 HOH HOH . F 6 HOH A 39 439 7 HOH HOH . F 6 HOH A 40 440 94 HOH HOH . F 6 HOH A 41 441 30 HOH HOH . F 6 HOH A 42 442 77 HOH HOH . F 6 HOH A 43 443 130 HOH HOH . F 6 HOH A 44 444 24 HOH HOH . F 6 HOH A 45 445 103 HOH HOH . F 6 HOH A 46 446 79 HOH HOH . F 6 HOH A 47 447 51 HOH HOH . F 6 HOH A 48 448 222 HOH HOH . F 6 HOH A 49 449 45 HOH HOH . F 6 HOH A 50 450 13 HOH HOH . F 6 HOH A 51 451 134 HOH HOH . F 6 HOH A 52 452 54 HOH HOH . F 6 HOH A 53 453 78 HOH HOH . F 6 HOH A 54 454 175 HOH HOH . F 6 HOH A 55 455 217 HOH HOH . F 6 HOH A 56 456 74 HOH HOH . F 6 HOH A 57 457 128 HOH HOH . F 6 HOH A 58 458 36 HOH HOH . F 6 HOH A 59 459 233 HOH HOH . F 6 HOH A 60 460 181 HOH HOH . F 6 HOH A 61 461 32 HOH HOH . F 6 HOH A 62 462 23 HOH HOH . F 6 HOH A 63 463 60 HOH HOH . F 6 HOH A 64 464 15 HOH HOH . F 6 HOH A 65 465 156 HOH HOH . F 6 HOH A 66 466 99 HOH HOH . F 6 HOH A 67 467 176 HOH HOH . F 6 HOH A 68 468 111 HOH HOH . F 6 HOH A 69 469 208 HOH HOH . F 6 HOH A 70 470 21 HOH HOH . F 6 HOH A 71 471 50 HOH HOH . F 6 HOH A 72 472 82 HOH HOH . F 6 HOH A 73 473 145 HOH HOH . F 6 HOH A 74 474 53 HOH HOH . F 6 HOH A 75 475 218 HOH HOH . F 6 HOH A 76 476 169 HOH HOH . F 6 HOH A 77 477 174 HOH HOH . F 6 HOH A 78 478 184 HOH HOH . F 6 HOH A 79 479 33 HOH HOH . F 6 HOH A 80 480 43 HOH HOH . F 6 HOH A 81 481 172 HOH HOH . F 6 HOH A 82 482 173 HOH HOH . F 6 HOH A 83 483 150 HOH HOH . F 6 HOH A 84 484 124 HOH HOH . F 6 HOH A 85 485 133 HOH HOH . F 6 HOH A 86 486 22 HOH HOH . F 6 HOH A 87 487 34 HOH HOH . F 6 HOH A 88 488 38 HOH HOH . F 6 HOH A 89 489 2 HOH HOH . F 6 HOH A 90 490 76 HOH HOH . F 6 HOH A 91 491 206 HOH HOH . F 6 HOH A 92 492 12 HOH HOH . F 6 HOH A 93 493 159 HOH HOH . F 6 HOH A 94 494 149 HOH HOH . F 6 HOH A 95 495 48 HOH HOH . F 6 HOH A 96 496 10 HOH HOH . F 6 HOH A 97 497 6 HOH HOH . F 6 HOH A 98 498 285 HOH HOH . F 6 HOH A 99 499 18 HOH HOH . F 6 HOH A 100 500 190 HOH HOH . F 6 HOH A 101 501 214 HOH HOH . F 6 HOH A 102 502 28 HOH HOH . F 6 HOH A 103 503 119 HOH HOH . F 6 HOH A 104 504 100 HOH HOH . F 6 HOH A 105 505 203 HOH HOH . F 6 HOH A 106 506 58 HOH HOH . F 6 HOH A 107 507 273 HOH HOH . F 6 HOH A 108 508 120 HOH HOH . F 6 HOH A 109 509 116 HOH HOH . F 6 HOH A 110 510 144 HOH HOH . F 6 HOH A 111 511 39 HOH HOH . F 6 HOH A 112 512 35 HOH HOH . F 6 HOH A 113 513 112 HOH HOH . F 6 HOH A 114 514 62 HOH HOH . F 6 HOH A 115 515 202 HOH HOH . F 6 HOH A 116 516 42 HOH HOH . F 6 HOH A 117 517 55 HOH HOH . F 6 HOH A 118 518 97 HOH HOH . F 6 HOH A 119 519 276 HOH HOH . F 6 HOH A 120 520 153 HOH HOH . F 6 HOH A 121 521 164 HOH HOH . F 6 HOH A 122 522 193 HOH HOH . F 6 HOH A 123 523 157 HOH HOH . F 6 HOH A 124 524 26 HOH HOH . F 6 HOH A 125 525 25 HOH HOH . F 6 HOH A 126 526 126 HOH HOH . F 6 HOH A 127 527 240 HOH HOH . F 6 HOH A 128 528 242 HOH HOH . F 6 HOH A 129 529 11 HOH HOH . F 6 HOH A 130 530 158 HOH HOH . F 6 HOH A 131 531 87 HOH HOH . F 6 HOH A 132 532 127 HOH HOH . F 6 HOH A 133 533 248 HOH HOH . F 6 HOH A 134 534 37 HOH HOH . F 6 HOH A 135 535 59 HOH HOH . F 6 HOH A 136 536 188 HOH HOH . F 6 HOH A 137 537 154 HOH HOH . F 6 HOH A 138 538 280 HOH HOH . F 6 HOH A 139 539 92 HOH HOH . F 6 HOH A 140 540 123 HOH HOH . F 6 HOH A 141 541 207 HOH HOH . F 6 HOH A 142 542 70 HOH HOH . F 6 HOH A 143 543 90 HOH HOH . F 6 HOH A 144 544 148 HOH HOH . F 6 HOH A 145 545 180 HOH HOH . F 6 HOH A 146 546 255 HOH HOH . F 6 HOH A 147 547 191 HOH HOH . F 6 HOH A 148 548 179 HOH HOH . F 6 HOH A 149 549 259 HOH HOH . F 6 HOH A 150 550 44 HOH HOH . F 6 HOH A 151 551 107 HOH HOH . F 6 HOH A 152 552 69 HOH HOH . F 6 HOH A 153 553 234 HOH HOH . F 6 HOH A 154 554 113 HOH HOH . F 6 HOH A 155 555 135 HOH HOH . F 6 HOH A 156 556 262 HOH HOH . F 6 HOH A 157 557 117 HOH HOH . F 6 HOH A 158 558 17 HOH HOH . F 6 HOH A 159 559 263 HOH HOH . F 6 HOH A 160 560 161 HOH HOH . F 6 HOH A 161 561 72 HOH HOH . F 6 HOH A 162 562 98 HOH HOH . F 6 HOH A 163 563 284 HOH HOH . F 6 HOH A 164 564 170 HOH HOH . F 6 HOH A 165 565 68 HOH HOH . F 6 HOH A 166 566 183 HOH HOH . F 6 HOH A 167 567 189 HOH HOH . F 6 HOH A 168 568 257 HOH HOH . F 6 HOH A 169 569 138 HOH HOH . F 6 HOH A 170 570 272 HOH HOH . F 6 HOH A 171 571 194 HOH HOH . F 6 HOH A 172 572 132 HOH HOH . F 6 HOH A 173 573 122 HOH HOH . F 6 HOH A 174 574 198 HOH HOH . F 6 HOH A 175 575 52 HOH HOH . F 6 HOH A 176 576 71 HOH HOH . F 6 HOH A 177 577 67 HOH HOH . F 6 HOH A 178 578 229 HOH HOH . F 6 HOH A 179 579 237 HOH HOH . F 6 HOH A 180 580 40 HOH HOH . F 6 HOH A 181 581 210 HOH HOH . F 6 HOH A 182 582 141 HOH HOH . F 6 HOH A 183 583 227 HOH HOH . F 6 HOH A 184 584 95 HOH HOH . F 6 HOH A 185 585 131 HOH HOH . F 6 HOH A 186 586 91 HOH HOH . F 6 HOH A 187 587 118 HOH HOH . F 6 HOH A 188 588 121 HOH HOH . F 6 HOH A 189 589 85 HOH HOH . F 6 HOH A 190 590 216 HOH HOH . F 6 HOH A 191 591 163 HOH HOH . F 6 HOH A 192 592 143 HOH HOH . F 6 HOH A 193 593 136 HOH HOH . F 6 HOH A 194 594 137 HOH HOH . F 6 HOH A 195 595 200 HOH HOH . F 6 HOH A 196 596 171 HOH HOH . F 6 HOH A 197 597 281 HOH HOH . F 6 HOH A 198 598 64 HOH HOH . F 6 HOH A 199 599 165 HOH HOH . F 6 HOH A 200 600 196 HOH HOH . F 6 HOH A 201 601 142 HOH HOH . F 6 HOH A 202 602 146 HOH HOH . F 6 HOH A 203 603 89 HOH HOH . F 6 HOH A 204 604 215 HOH HOH . F 6 HOH A 205 605 195 HOH HOH . F 6 HOH A 206 606 251 HOH HOH . F 6 HOH A 207 607 213 HOH HOH . F 6 HOH A 208 608 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . D 4 -17.01 -23.144 -13.205 0.63 28.21 ? C2 BGC 303 A 1 HETATM 2 C C3 BGC . . . D 4 -18.365 -23.028 -12.516 0.63 28.89 ? C3 BGC 303 A 1 HETATM 3 C C4 BGC . . . D 4 -19.366 -24.027 -13.09 0.63 29.86 ? C4 BGC 303 A 1 HETATM 4 C C5 BGC . . . D 4 -18.755 -25.425 -13.105 0.63 23.12 ? C5 BGC 303 A 1 HETATM 5 C C6 BGC . . . D 4 -19.636 -26.475 -13.742 0.63 21.31 ? C6 BGC 303 A 1 HETATM 6 C C1 BGC . . . D 4 -16.538 -24.594 -13.247 0.63 18.32 ? C1 BGC 303 A 1 HETATM 7 O O1 BGC . . . D 4 -15.355 -24.665 -13.995 0.63 17.84 ? O1 BGC 303 A 1 HETATM 8 O O2 BGC . . . D 4 -16.052 -22.345 -12.522 0.63 21.47 ? O2 BGC 303 A 1 HETATM 9 O O3 BGC . . . D 4 -18.855 -21.701 -12.679 0.63 33.41 ? O3 BGC 303 A 1 HETATM 10 O O4 BGC . . . D 4 -20.551 -24.026 -12.3 0.63 29.89 ? O4 BGC 303 A 1 HETATM 11 O O5 BGC . . . D 4 -17.543 -25.39 -13.867 0.63 23.04 ? O5 BGC 303 A 1 HETATM 12 O O6 BGC . . . D 4 -19.931 -26.168 -15.094 0.63 28.18 ? O6 BGC 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #