data_5O44 # _model_server_result.job_id QCCB1UlFvxn12hEFuw0wjw _model_server_result.datetime_utc '2024-12-27 00:16:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":101}' # _entry.id 5O44 # _exptl.entry_id 5O44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O44 _cell.length_a 110.767 _cell.length_b 110.767 _cell.length_c 417.004 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,E,J,K,L,O,P,Q,R,T,U,W 1 1,4 A,D,F,G,H,I,M,N,S,V,X 1 2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 x-y-1,x-1,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 -55.3835 -95.927036 69.500667 3 'crystal symmetry operation' 8_445 x-y-1,-y-1,-z 1 0 0 0 -1 0 0 0 -1 -55.3835 -95.927036 0 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 55.3835 -95.927036 69.500667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 64 A GLU 64 1_555 I MG MG . A MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc2 E OE2 GLU 24 E GLU 24 1_555 R MG MG . E MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 E OD2 ASP 52 E ASP 52 1_555 R MG MG . E MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5O44 _atom_sites.fract_transf_matrix[1][1] 0.009028 _atom_sites.fract_transf_matrix[1][2] 0.005212 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 SO4 A 1 101 11 SO4 SO4 . H 4 SO4 A 1 102 21 SO4 SO4 . I 5 MG A 1 103 1 MG MG . J 4 SO4 C 1 101 1 SO4 SO4 . K 4 SO4 C 1 102 24 SO4 SO4 . L 5 MG D 1 101 2 MG MG . M 4 SO4 B 1 101 7 SO4 SO4 . N 4 SO4 B 1 102 23 SO4 SO4 . O 4 SO4 E 1 101 3 SO4 SO4 . P 4 SO4 E 1 102 19 SO4 SO4 . Q 4 SO4 E 1 103 22 SO4 SO4 . R 5 MG E 1 104 3 MG MG . S 6 HOH A 1 201 112 HOH HOH . S 6 HOH A 2 202 108 HOH HOH . S 6 HOH A 3 203 66 HOH HOH . S 6 HOH A 4 204 111 HOH HOH . S 6 HOH A 5 205 19 HOH HOH . S 6 HOH A 6 206 151 HOH HOH . S 6 HOH A 7 207 64 HOH HOH . S 6 HOH A 8 208 110 HOH HOH . S 6 HOH A 9 209 136 HOH HOH . S 6 HOH A 10 210 124 HOH HOH . T 6 HOH C 1 201 103 HOH HOH . U 6 HOH D 1 201 42 HOH HOH . U 6 HOH D 2 202 45 HOH HOH . U 6 HOH D 3 203 83 HOH HOH . U 6 HOH D 4 204 150 HOH HOH . U 6 HOH D 5 205 97 HOH HOH . V 6 HOH B 1 201 74 HOH HOH . V 6 HOH B 2 202 65 HOH HOH . V 6 HOH B 3 203 44 HOH HOH . W 6 HOH E 1 201 130 HOH HOH . W 6 HOH E 2 202 50 HOH HOH . W 6 HOH E 3 203 132 HOH HOH . W 6 HOH E 4 204 14 HOH HOH . W 6 HOH E 5 205 85 HOH HOH . W 6 HOH E 6 206 68 HOH HOH . W 6 HOH E 7 207 60 HOH HOH . W 6 HOH E 8 208 141 HOH HOH . W 6 HOH E 9 209 58 HOH HOH . W 6 HOH E 10 210 51 HOH HOH . W 6 HOH E 11 211 142 HOH HOH . W 6 HOH E 12 212 41 HOH HOH . W 6 HOH E 13 213 52 HOH HOH . W 6 HOH E 14 214 56 HOH HOH . W 6 HOH E 15 215 144 HOH HOH . W 6 HOH E 16 216 23 HOH HOH . W 6 HOH E 17 217 116 HOH HOH . X 6 HOH F 1 101 87 HOH HOH . X 6 HOH F 2 102 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 33.342 _atom_site.Cartn_y -35.49 _atom_site.Cartn_z 14.563 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 101.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #