data_5O46
#
_model_server_result.job_id            96a9CvgyqckQMW0L5mu-og 
_model_server_result.datetime_utc      '2024-10-19 17:31:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o46 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5O46 
#
_exptl.entry_id    5O46 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5O46 
_cell.length_a            39.033 
_cell.length_b            76.929 
_cell.length_c            92.122 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O46 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 B CYS 64 1_555 A SG CYS 78 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
disulf ? disulf2 A SG CYS 89 B CYS 87 1_555 A SG CYS 109 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf3 B SG CYS 66 A CYS 64 1_555 B SG CYS 78 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf4 B SG CYS 89 A CYS 87 1_555 B SG CYS 109 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5O46 
_atom_sites.fract_transf_matrix[1][1]    0.025619 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010855 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL B 1 201 2 GOL GOL . 
D 2 GOL A 1 201 1 GOL GOL . 
E 2 GOL A 1 202 3 GOL GOL . 
F 3 HOH B 1 301 271 HOH HOH . 
F 3 HOH B 2 302 265 HOH HOH . 
F 3 HOH B 3 303 39 HOH HOH . 
F 3 HOH B 4 304 229 HOH HOH . 
F 3 HOH B 5 305 16 HOH HOH . 
F 3 HOH B 6 306 27 HOH HOH . 
F 3 HOH B 7 307 210 HOH HOH . 
F 3 HOH B 8 308 202 HOH HOH . 
F 3 HOH B 9 309 92 HOH HOH . 
F 3 HOH B 10 310 173 HOH HOH . 
F 3 HOH B 11 311 59 HOH HOH . 
F 3 HOH B 12 312 164 HOH HOH . 
F 3 HOH B 13 313 141 HOH HOH . 
F 3 HOH B 14 314 72 HOH HOH . 
F 3 HOH B 15 315 96 HOH HOH . 
F 3 HOH B 16 316 256 HOH HOH . 
F 3 HOH B 17 317 285 HOH HOH . 
F 3 HOH B 18 318 7 HOH HOH . 
F 3 HOH B 19 319 21 HOH HOH . 
F 3 HOH B 20 320 161 HOH HOH . 
F 3 HOH B 21 321 11 HOH HOH . 
F 3 HOH B 22 322 35 HOH HOH . 
F 3 HOH B 23 323 102 HOH HOH . 
F 3 HOH B 24 324 67 HOH HOH . 
F 3 HOH B 25 325 165 HOH HOH . 
F 3 HOH B 26 326 138 HOH HOH . 
F 3 HOH B 27 327 6 HOH HOH . 
F 3 HOH B 28 328 12 HOH HOH . 
F 3 HOH B 29 329 213 HOH HOH . 
F 3 HOH B 30 330 1 HOH HOH . 
F 3 HOH B 31 331 282 HOH HOH . 
F 3 HOH B 32 332 30 HOH HOH . 
F 3 HOH B 33 333 10 HOH HOH . 
F 3 HOH B 34 334 54 HOH HOH . 
F 3 HOH B 35 335 249 HOH HOH . 
F 3 HOH B 36 336 140 HOH HOH . 
F 3 HOH B 37 337 57 HOH HOH . 
F 3 HOH B 38 338 113 HOH HOH . 
F 3 HOH B 39 339 63 HOH HOH . 
F 3 HOH B 40 340 17 HOH HOH . 
F 3 HOH B 41 341 58 HOH HOH . 
F 3 HOH B 42 342 104 HOH HOH . 
F 3 HOH B 43 343 206 HOH HOH . 
F 3 HOH B 44 344 203 HOH HOH . 
F 3 HOH B 45 345 62 HOH HOH . 
F 3 HOH B 46 346 49 HOH HOH . 
F 3 HOH B 47 347 103 HOH HOH . 
F 3 HOH B 48 348 53 HOH HOH . 
F 3 HOH B 49 349 5 HOH HOH . 
F 3 HOH B 50 350 13 HOH HOH . 
F 3 HOH B 51 351 3 HOH HOH . 
F 3 HOH B 52 352 43 HOH HOH . 
F 3 HOH B 53 353 214 HOH HOH . 
F 3 HOH B 54 354 107 HOH HOH . 
F 3 HOH B 55 355 48 HOH HOH . 
F 3 HOH B 56 356 89 HOH HOH . 
F 3 HOH B 57 357 110 HOH HOH . 
F 3 HOH B 58 358 15 HOH HOH . 
F 3 HOH B 59 359 18 HOH HOH . 
F 3 HOH B 60 360 195 HOH HOH . 
F 3 HOH B 61 361 106 HOH HOH . 
F 3 HOH B 62 362 286 HOH HOH . 
F 3 HOH B 63 363 208 HOH HOH . 
F 3 HOH B 64 364 149 HOH HOH . 
F 3 HOH B 65 365 216 HOH HOH . 
F 3 HOH B 66 366 231 HOH HOH . 
F 3 HOH B 67 367 20 HOH HOH . 
F 3 HOH B 68 368 75 HOH HOH . 
F 3 HOH B 69 369 87 HOH HOH . 
F 3 HOH B 70 370 64 HOH HOH . 
F 3 HOH B 71 371 201 HOH HOH . 
F 3 HOH B 72 372 254 HOH HOH . 
F 3 HOH B 73 373 2 HOH HOH . 
F 3 HOH B 74 374 197 HOH HOH . 
F 3 HOH B 75 375 278 HOH HOH . 
F 3 HOH B 76 376 204 HOH HOH . 
F 3 HOH B 77 377 65 HOH HOH . 
F 3 HOH B 78 378 153 HOH HOH . 
F 3 HOH B 79 379 250 HOH HOH . 
F 3 HOH B 80 380 61 HOH HOH . 
F 3 HOH B 81 381 148 HOH HOH . 
F 3 HOH B 82 382 283 HOH HOH . 
F 3 HOH B 83 383 111 HOH HOH . 
F 3 HOH B 84 384 98 HOH HOH . 
F 3 HOH B 85 385 162 HOH HOH . 
F 3 HOH B 86 386 97 HOH HOH . 
F 3 HOH B 87 387 264 HOH HOH . 
F 3 HOH B 88 388 50 HOH HOH . 
F 3 HOH B 89 389 284 HOH HOH . 
F 3 HOH B 90 390 77 HOH HOH . 
F 3 HOH B 91 391 90 HOH HOH . 
F 3 HOH B 92 392 112 HOH HOH . 
F 3 HOH B 93 393 199 HOH HOH . 
F 3 HOH B 94 394 235 HOH HOH . 
F 3 HOH B 95 395 272 HOH HOH . 
F 3 HOH B 96 396 230 HOH HOH . 
F 3 HOH B 97 397 94 HOH HOH . 
F 3 HOH B 98 398 134 HOH HOH . 
F 3 HOH B 99 399 257 HOH HOH . 
F 3 HOH B 100 400 221 HOH HOH . 
F 3 HOH B 101 401 236 HOH HOH . 
F 3 HOH B 102 402 196 HOH HOH . 
F 3 HOH B 103 403 209 HOH HOH . 
F 3 HOH B 104 404 95 HOH HOH . 
F 3 HOH B 105 405 163 HOH HOH . 
F 3 HOH B 106 406 117 HOH HOH . 
F 3 HOH B 107 407 93 HOH HOH . 
F 3 HOH B 108 408 78 HOH HOH . 
F 3 HOH B 109 409 91 HOH HOH . 
F 3 HOH B 110 410 251 HOH HOH . 
F 3 HOH B 111 411 220 HOH HOH . 
F 3 HOH B 112 412 226 HOH HOH . 
F 3 HOH B 113 413 73 HOH HOH . 
F 3 HOH B 114 414 205 HOH HOH . 
F 3 HOH B 115 415 207 HOH HOH . 
F 3 HOH B 116 416 279 HOH HOH . 
F 3 HOH B 117 417 151 HOH HOH . 
F 3 HOH B 118 418 225 HOH HOH . 
F 3 HOH B 119 419 211 HOH HOH . 
F 3 HOH B 120 420 172 HOH HOH . 
F 3 HOH B 121 421 108 HOH HOH . 
F 3 HOH B 122 422 200 HOH HOH . 
F 3 HOH B 123 423 241 HOH HOH . 
F 3 HOH B 124 424 252 HOH HOH . 
F 3 HOH B 125 425 105 HOH HOH . 
G 3 HOH A 1 301 118 HOH HOH . 
G 3 HOH A 2 302 69 HOH HOH . 
G 3 HOH A 3 303 23 HOH HOH . 
G 3 HOH A 4 304 240 HOH HOH . 
G 3 HOH A 5 305 45 HOH HOH . 
G 3 HOH A 6 306 224 HOH HOH . 
G 3 HOH A 7 307 139 HOH HOH . 
G 3 HOH A 8 308 275 HOH HOH . 
G 3 HOH A 9 309 276 HOH HOH . 
G 3 HOH A 10 310 169 HOH HOH . 
G 3 HOH A 11 311 258 HOH HOH . 
G 3 HOH A 12 312 42 HOH HOH . 
G 3 HOH A 13 313 47 HOH HOH . 
G 3 HOH A 14 314 14 HOH HOH . 
G 3 HOH A 15 315 215 HOH HOH . 
G 3 HOH A 16 316 122 HOH HOH . 
G 3 HOH A 17 317 37 HOH HOH . 
G 3 HOH A 18 318 26 HOH HOH . 
G 3 HOH A 19 319 41 HOH HOH . 
G 3 HOH A 20 320 8 HOH HOH . 
G 3 HOH A 21 321 33 HOH HOH . 
G 3 HOH A 22 322 247 HOH HOH . 
G 3 HOH A 23 323 32 HOH HOH . 
G 3 HOH A 24 324 177 HOH HOH . 
G 3 HOH A 25 325 31 HOH HOH . 
G 3 HOH A 26 326 142 HOH HOH . 
G 3 HOH A 27 327 234 HOH HOH . 
G 3 HOH A 28 328 222 HOH HOH . 
G 3 HOH A 29 329 150 HOH HOH . 
G 3 HOH A 30 330 55 HOH HOH . 
G 3 HOH A 31 331 9 HOH HOH . 
G 3 HOH A 32 332 19 HOH HOH . 
G 3 HOH A 33 333 46 HOH HOH . 
G 3 HOH A 34 334 66 HOH HOH . 
G 3 HOH A 35 335 71 HOH HOH . 
G 3 HOH A 36 336 270 HOH HOH . 
G 3 HOH A 37 337 188 HOH HOH . 
G 3 HOH A 38 338 121 HOH HOH . 
G 3 HOH A 39 339 268 HOH HOH . 
G 3 HOH A 40 340 260 HOH HOH . 
G 3 HOH A 41 341 74 HOH HOH . 
G 3 HOH A 42 342 4 HOH HOH . 
G 3 HOH A 43 343 34 HOH HOH . 
G 3 HOH A 44 344 136 HOH HOH . 
G 3 HOH A 45 345 115 HOH HOH . 
G 3 HOH A 46 346 171 HOH HOH . 
G 3 HOH A 47 347 40 HOH HOH . 
G 3 HOH A 48 348 277 HOH HOH . 
G 3 HOH A 49 349 86 HOH HOH . 
G 3 HOH A 50 350 147 HOH HOH . 
G 3 HOH A 51 351 29 HOH HOH . 
G 3 HOH A 52 352 52 HOH HOH . 
G 3 HOH A 53 353 83 HOH HOH . 
G 3 HOH A 54 354 25 HOH HOH . 
G 3 HOH A 55 355 243 HOH HOH . 
G 3 HOH A 56 356 137 HOH HOH . 
G 3 HOH A 57 357 88 HOH HOH . 
G 3 HOH A 58 358 36 HOH HOH . 
G 3 HOH A 59 359 28 HOH HOH . 
G 3 HOH A 60 360 51 HOH HOH . 
G 3 HOH A 61 361 100 HOH HOH . 
G 3 HOH A 62 362 261 HOH HOH . 
G 3 HOH A 63 363 124 HOH HOH . 
G 3 HOH A 64 364 158 HOH HOH . 
G 3 HOH A 65 365 287 HOH HOH . 
G 3 HOH A 66 366 44 HOH HOH . 
G 3 HOH A 67 367 263 HOH HOH . 
G 3 HOH A 68 368 135 HOH HOH . 
G 3 HOH A 69 369 233 HOH HOH . 
G 3 HOH A 70 370 143 HOH HOH . 
G 3 HOH A 71 371 132 HOH HOH . 
G 3 HOH A 72 372 280 HOH HOH . 
G 3 HOH A 73 373 228 HOH HOH . 
G 3 HOH A 74 374 101 HOH HOH . 
G 3 HOH A 75 375 232 HOH HOH . 
G 3 HOH A 76 376 269 HOH HOH . 
G 3 HOH A 77 377 212 HOH HOH . 
G 3 HOH A 78 378 130 HOH HOH . 
G 3 HOH A 79 379 99 HOH HOH . 
G 3 HOH A 80 380 68 HOH HOH . 
G 3 HOH A 81 381 267 HOH HOH . 
G 3 HOH A 82 382 60 HOH HOH . 
G 3 HOH A 83 383 126 HOH HOH . 
G 3 HOH A 84 384 246 HOH HOH . 
G 3 HOH A 85 385 248 HOH HOH . 
G 3 HOH A 86 386 125 HOH HOH . 
G 3 HOH A 87 387 133 HOH HOH . 
G 3 HOH A 88 388 281 HOH HOH . 
G 3 HOH A 89 389 217 HOH HOH . 
G 3 HOH A 90 390 116 HOH HOH . 
G 3 HOH A 91 391 120 HOH HOH . 
G 3 HOH A 92 392 239 HOH HOH . 
G 3 HOH A 93 393 290 HOH HOH . 
G 3 HOH A 94 394 289 HOH HOH . 
G 3 HOH A 95 395 56 HOH HOH . 
G 3 HOH A 96 396 123 HOH HOH . 
G 3 HOH A 97 397 253 HOH HOH . 
G 3 HOH A 98 398 155 HOH HOH . 
G 3 HOH A 99 399 227 HOH HOH . 
G 3 HOH A 100 400 114 HOH HOH . 
G 3 HOH A 101 401 85 HOH HOH . 
G 3 HOH A 102 402 80 HOH HOH . 
G 3 HOH A 103 403 128 HOH HOH . 
G 3 HOH A 104 404 237 HOH HOH . 
G 3 HOH A 105 405 274 HOH HOH . 
G 3 HOH A 106 406 82 HOH HOH . 
G 3 HOH A 107 407 81 HOH HOH . 
G 3 HOH A 108 408 84 HOH HOH . 
G 3 HOH A 109 409 223 HOH HOH . 
G 3 HOH A 110 410 218 HOH HOH . 
G 3 HOH A 111 411 127 HOH HOH . 
G 3 HOH A 112 412 109 HOH HOH . 
G 3 HOH A 113 413 152 HOH HOH . 
G 3 HOH A 114 414 159 HOH HOH . 
G 3 HOH A 115 415 245 HOH HOH . 
G 3 HOH A 116 416 259 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -0.485 19.493 9.358 1 71.21 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . C 2 0.374 19.147 8.267 1 69.3 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . C 2 -1.812 18.751 9.224 1 72.23 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . C 2 -2.427 18.674 10.52 1 73.43 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . C 2 -2.738 19.46 8.228 1 76.64 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . C 2 -4.07 18.906 8.231 1 77.35 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#