data_5O49 # _model_server_result.job_id fhnOYEgXNDZyfKeBtEqnbA _model_server_result.datetime_utc '2024-10-11 01:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 5O49 # _exptl.entry_id 5O49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl 3-fluorosulfonylbenzoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.64 _cell.angle_gamma 90 _cell.entry_id 5O49 _cell.length_a 209.55 _cell.length_b 57.59 _cell.length_c 65.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 58 A LYS 514 1_555 C S 9K5 . A 9K5 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.682 ? covale ? covale2 B NZ LYS 58 B LYS 514 1_555 F S 9K5 . B 9K5 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? # _chem_comp.formula 'C17 H16 F N5 O7 S' _chem_comp.formula_weight 453.402 _chem_comp.id 9K5 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl 3-fluorosulfonylbenzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5O49 _atom_sites.fract_transf_matrix[1][1] 0.004772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001517 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9K5 A 1 801 1 9K5 INH . D 3 SO4 A 1 802 2 SO4 SO4 . E 3 SO4 A 1 803 3 SO4 SO4 . F 2 9K5 B 1 801 2 9K5 INH . G 3 SO4 B 1 802 1 SO4 SO4 . H 4 HOH A 1 901 33 HOH HOH . H 4 HOH A 2 902 22 HOH HOH . H 4 HOH A 3 903 23 HOH HOH . H 4 HOH A 4 904 38 HOH HOH . H 4 HOH A 5 905 39 HOH HOH . H 4 HOH A 6 906 52 HOH HOH . H 4 HOH A 7 907 93 HOH HOH . H 4 HOH A 8 908 29 HOH HOH . H 4 HOH A 9 909 115 HOH HOH . H 4 HOH A 10 910 48 HOH HOH . H 4 HOH A 11 911 8 HOH HOH . H 4 HOH A 12 912 51 HOH HOH . H 4 HOH A 13 913 91 HOH HOH . H 4 HOH A 14 914 44 HOH HOH . H 4 HOH A 15 915 9 HOH HOH . H 4 HOH A 16 916 43 HOH HOH . H 4 HOH A 17 917 7 HOH HOH . H 4 HOH A 18 918 82 HOH HOH . H 4 HOH A 19 919 18 HOH HOH . H 4 HOH A 20 920 4 HOH HOH . H 4 HOH A 21 921 86 HOH HOH . H 4 HOH A 22 922 110 HOH HOH . H 4 HOH A 23 923 70 HOH HOH . H 4 HOH A 24 924 109 HOH HOH . H 4 HOH A 25 925 46 HOH HOH . H 4 HOH A 26 926 84 HOH HOH . H 4 HOH A 27 927 50 HOH HOH . H 4 HOH A 28 928 15 HOH HOH . H 4 HOH A 29 929 104 HOH HOH . H 4 HOH A 30 930 83 HOH HOH . H 4 HOH A 31 931 106 HOH HOH . H 4 HOH A 32 932 3 HOH HOH . H 4 HOH A 33 933 100 HOH HOH . H 4 HOH A 34 934 80 HOH HOH . H 4 HOH A 35 935 41 HOH HOH . H 4 HOH A 36 936 45 HOH HOH . H 4 HOH A 37 937 97 HOH HOH . H 4 HOH A 38 938 98 HOH HOH . H 4 HOH A 39 939 96 HOH HOH . H 4 HOH A 40 940 99 HOH HOH . H 4 HOH A 41 941 47 HOH HOH . H 4 HOH A 42 942 116 HOH HOH . H 4 HOH A 43 943 32 HOH HOH . H 4 HOH A 44 944 101 HOH HOH . H 4 HOH A 45 945 2 HOH HOH . H 4 HOH A 46 946 10 HOH HOH . H 4 HOH A 47 947 87 HOH HOH . H 4 HOH A 48 948 90 HOH HOH . H 4 HOH A 49 949 105 HOH HOH . H 4 HOH A 50 950 31 HOH HOH . H 4 HOH A 51 951 79 HOH HOH . H 4 HOH A 52 952 24 HOH HOH . H 4 HOH A 53 953 81 HOH HOH . H 4 HOH A 54 954 113 HOH HOH . H 4 HOH A 55 955 107 HOH HOH . H 4 HOH A 56 956 21 HOH HOH . H 4 HOH A 57 957 14 HOH HOH . H 4 HOH A 58 958 77 HOH HOH . H 4 HOH A 59 959 73 HOH HOH . H 4 HOH A 60 960 13 HOH HOH . H 4 HOH A 61 961 12 HOH HOH . H 4 HOH A 62 962 66 HOH HOH . H 4 HOH A 63 963 49 HOH HOH . H 4 HOH A 64 964 26 HOH HOH . H 4 HOH A 65 965 72 HOH HOH . H 4 HOH A 66 966 6 HOH HOH . H 4 HOH A 67 967 94 HOH HOH . H 4 HOH A 68 968 30 HOH HOH . H 4 HOH A 69 969 92 HOH HOH . H 4 HOH A 70 970 64 HOH HOH . H 4 HOH A 71 971 114 HOH HOH . H 4 HOH A 72 972 28 HOH HOH . H 4 HOH A 73 973 85 HOH HOH . H 4 HOH A 74 974 108 HOH HOH . H 4 HOH A 75 975 63 HOH HOH . H 4 HOH A 76 976 112 HOH HOH . H 4 HOH A 77 977 53 HOH HOH . H 4 HOH A 78 978 89 HOH HOH . H 4 HOH A 79 979 71 HOH HOH . H 4 HOH A 80 980 103 HOH HOH . H 4 HOH A 81 981 27 HOH HOH . H 4 HOH A 82 982 95 HOH HOH . H 4 HOH A 83 983 102 HOH HOH . H 4 HOH A 84 984 54 HOH HOH . H 4 HOH A 85 985 16 HOH HOH . H 4 HOH A 86 986 88 HOH HOH . I 4 HOH B 1 901 34 HOH HOH . I 4 HOH B 2 902 5 HOH HOH . I 4 HOH B 3 903 35 HOH HOH . I 4 HOH B 4 904 55 HOH HOH . I 4 HOH B 5 905 65 HOH HOH . I 4 HOH B 6 906 120 HOH HOH . I 4 HOH B 7 907 37 HOH HOH . I 4 HOH B 8 908 118 HOH HOH . I 4 HOH B 9 909 130 HOH HOH . I 4 HOH B 10 910 67 HOH HOH . I 4 HOH B 11 911 36 HOH HOH . I 4 HOH B 12 912 58 HOH HOH . I 4 HOH B 13 913 11 HOH HOH . I 4 HOH B 14 914 121 HOH HOH . I 4 HOH B 15 915 42 HOH HOH . I 4 HOH B 16 916 127 HOH HOH . I 4 HOH B 17 917 131 HOH HOH . I 4 HOH B 18 918 133 HOH HOH . I 4 HOH B 19 919 40 HOH HOH . I 4 HOH B 20 920 61 HOH HOH . I 4 HOH B 21 921 78 HOH HOH . I 4 HOH B 22 922 56 HOH HOH . I 4 HOH B 23 923 62 HOH HOH . I 4 HOH B 24 924 128 HOH HOH . I 4 HOH B 25 925 132 HOH HOH . I 4 HOH B 26 926 59 HOH HOH . I 4 HOH B 27 927 122 HOH HOH . I 4 HOH B 28 928 119 HOH HOH . I 4 HOH B 29 929 19 HOH HOH . I 4 HOH B 30 930 129 HOH HOH . I 4 HOH B 31 931 125 HOH HOH . I 4 HOH B 32 932 68 HOH HOH . I 4 HOH B 33 933 60 HOH HOH . I 4 HOH B 34 934 75 HOH HOH . I 4 HOH B 35 935 117 HOH HOH . I 4 HOH B 36 936 1 HOH HOH . I 4 HOH B 37 937 76 HOH HOH . I 4 HOH B 38 938 123 HOH HOH . I 4 HOH B 39 939 124 HOH HOH . I 4 HOH B 40 940 69 HOH HOH . I 4 HOH B 41 941 74 HOH HOH . I 4 HOH B 42 942 111 HOH HOH . I 4 HOH B 43 943 57 HOH HOH . I 4 HOH B 44 944 134 HOH HOH . I 4 HOH B 45 945 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9K5 . . . F 2 31.409 6.654 21.522 1 81.45 ? C1 9K5 801 B 1 HETATM 2 C C2 9K5 . . . F 2 30.811 7.502 22.466 1 79.51 ? C2 9K5 801 B 1 HETATM 3 C C3 9K5 . . . F 2 30.151 8.654 22.056 1 83.78 ? C3 9K5 801 B 1 HETATM 4 O O4 9K5 . . . F 2 30.773 3.408 25.289 1 59.68 ? O4 9K5 801 B 1 HETATM 5 O O5 9K5 . . . F 2 33.306 1.681 23.477 1 61.59 ? O5 9K5 801 B 1 HETATM 6 C C7 9K5 . . . F 2 31.672 5.585 25.7 1 66.45 ? C7 9K5 801 B 1 HETATM 7 C C8 9K5 . . . F 2 31.957 4.096 25.723 1 63.31 ? C8 9K5 801 B 1 HETATM 8 C C9 9K5 . . . F 2 33.087 3.733 24.762 1 62.89 ? C9 9K5 801 B 1 HETATM 9 C C10 9K5 . . . F 2 32.467 2.819 23.727 1 60.44 ? C10 9K5 801 B 1 HETATM 10 C C11 9K5 . . . F 2 31.13 2.401 24.335 1 56.64 ? C11 9K5 801 B 1 HETATM 11 C C12 9K5 . . . F 2 29.578 3.233 22.515 1 45.44 ? C12 9K5 801 B 1 HETATM 12 C C13 9K5 . . . F 2 28.407 1.429 22.149 1 43.73 ? C13 9K5 801 B 1 HETATM 13 C C14 9K5 . . . F 2 29.315 1.165 23.162 1 45.96 ? C14 9K5 801 B 1 HETATM 14 C C15 9K5 . . . F 2 28.495 -1.033 23.346 1 44.07 ? C15 9K5 801 B 1 HETATM 15 C C16 9K5 . . . F 2 27.558 0.405 21.733 1 41.76 ? C16 9K5 801 B 1 HETATM 16 O O2 9K5 . . . F 2 30.33 7.946 24.75 1 73.71 ? O2 9K5 801 B 1 HETATM 17 C C6 9K5 . . . F 2 30.864 7.19 23.925 1 73.88 ? C6 9K5 801 B 1 HETATM 18 C C4 9K5 . . . F 2 30.082 8.971 20.706 1 87.86 ? C4 9K5 801 B 1 HETATM 19 S S 9K5 . . . F 2 29.233 10.435 20.289 1 93.69 ? S 9K5 801 B 1 HETATM 20 O O1 9K5 . . . F 2 29.203 10.616 18.861 1 94.28 ? O1 9K5 801 B 1 HETATM 21 O O 9K5 . . . F 2 29.916 11.527 20.916 1 94.44 ? O 9K5 801 B 1 HETATM 22 C C5 9K5 . . . F 2 30.675 8.135 19.752 1 85.74 ? C5 9K5 801 B 1 HETATM 23 C C 9K5 . . . F 2 31.342 6.972 20.162 1 83.72 ? C 9K5 801 B 1 HETATM 24 O O3 9K5 . . . F 2 31.551 5.985 24.341 1 70.14 ? O3 9K5 801 B 1 HETATM 25 O O6 9K5 . . . F 2 34.118 3.052 25.492 1 63.51 ? O6 9K5 801 B 1 HETATM 26 N N 9K5 . . . F 2 30.029 2.277 23.349 1 49.9 ? N 9K5 801 B 1 HETATM 27 N N2 9K5 . . . F 2 29.34 -0.066 23.756 1 43.74 ? N2 9K5 801 B 1 HETATM 28 N N3 9K5 . . . F 2 27.62 -0.807 22.34 1 42.99 ? N3 9K5 801 B 1 HETATM 29 N N4 9K5 . . . F 2 26.63 0.622 20.65 1 40.66 ? N4 9K5 801 B 1 HETATM 30 N N1 9K5 . . . F 2 28.578 2.715 21.77 1 44.17 ? N1 9K5 801 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #