data_5O4C # _model_server_result.job_id jK_yK7PCCgG5IXPdqIwddA _model_server_result.datetime_utc '2024-11-27 21:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":406}' # _entry.id 5O4C # _exptl.entry_id 5O4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.904 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 15-cis-1,2-dihydroneurosporene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O4C _cell.length_a 226.4 _cell.length_b 226.4 _cell.length_c 113.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id CA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1 C CYS 1 1_555 I CG3 DGA . C DGA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale2 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale3 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale4 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale5 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale6 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale7 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? covale ? covale8 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? covale ? covale9 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale10 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc9 C NE2 HIS 190 L HIS 190 1_555 X FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc10 C NE2 HIS 230 L HIS 230 1_555 X FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc11 D NE2 HIS 217 M HIS 217 1_555 X FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc12 D OE1 GLU 232 M GLU 232 1_555 X FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc13 D OE2 GLU 232 M GLU 232 1_555 X FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc14 D NE2 HIS 264 M HIS 264 1_555 X FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C40 H60' _chem_comp.formula_weight 540.904 _chem_comp.id NS5 _chem_comp.mon_nstd_flag . _chem_comp.name 15-cis-1,2-dihydroneurosporene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CM1 NS5 sing 935 n n C1 CM2 NS5 sing 936 n n C1 C2 NS5 sing 937 n n C1 H1 NS5 sing 938 n n CM1 HM11 NS5 sing 939 n n CM1 HM12 NS5 sing 940 n n CM1 HM13 NS5 sing 941 n n CM2 HM21 NS5 sing 942 n n CM2 HM22 NS5 sing 943 n n CM2 HM23 NS5 sing 944 n n C2 C3 NS5 sing 945 n n C2 H21 NS5 sing 946 n n C2 H22 NS5 sing 947 n n C3 C4 NS5 sing 948 n n C3 H31 NS5 sing 949 n n C3 H32 NS5 sing 950 n n C4 C5 NS5 sing 951 n n C4 H41 NS5 sing 952 n n C4 H42 NS5 sing 953 n n C5 C6 NS5 sing 954 n n C5 C7 NS5 doub 955 e n C6 H61 NS5 sing 956 n n C6 H62 NS5 sing 957 n n C6 H63 NS5 sing 958 n n C7 C8 NS5 sing 959 n n C7 H7 NS5 sing 960 n n C8 C9 NS5 sing 961 n n C8 H81 NS5 sing 962 n n C8 H82 NS5 sing 963 n n C9 C10 NS5 sing 964 n n C9 H91 NS5 sing 965 n n C9 H92 NS5 sing 966 n n C10 C11 NS5 sing 967 n n C10 C12 NS5 doub 968 e n C11 H111 NS5 sing 969 n n C11 H112 NS5 sing 970 n n C11 H113 NS5 sing 971 n n C12 C13 NS5 sing 972 n n C12 H12 NS5 sing 973 n n C13 C14 NS5 doub 974 e n C13 H13 NS5 sing 975 n n C14 C15 NS5 sing 976 n n C14 H14 NS5 sing 977 n n C15 C16 NS5 sing 978 n n C15 C17 NS5 doub 979 e n C16 H161 NS5 sing 980 n n C16 H162 NS5 sing 981 n n C16 H163 NS5 sing 982 n n C17 C18 NS5 sing 983 n n C17 H17 NS5 sing 984 n n C18 C19 NS5 doub 985 z n C18 H18 NS5 sing 986 n n C19 C20 NS5 sing 987 n n C19 H19 NS5 sing 988 n n C20 C21 NS5 doub 989 e n C20 H20 NS5 sing 990 n n C21 C22 NS5 sing 991 n n C21 C23 NS5 sing 992 n n C22 H221 NS5 sing 993 n n C22 H222 NS5 sing 994 n n C22 H223 NS5 sing 995 n n C23 C24 NS5 doub 996 e n C23 H23 NS5 sing 997 n n C24 C25 NS5 sing 998 n n C24 H24 NS5 sing 999 n n C25 C26 NS5 doub 1000 e n C25 H25 NS5 sing 1001 n n C26 C27 NS5 sing 1002 n n C26 C28 NS5 sing 1003 n n C27 H271 NS5 sing 1004 n n C27 H272 NS5 sing 1005 n n C27 H273 NS5 sing 1006 n n C28 C29 NS5 doub 1007 e n C28 H28 NS5 sing 1008 n n C29 C30 NS5 sing 1009 n n C29 H29 NS5 sing 1010 n n C30 C31 NS5 doub 1011 e n C30 H30 NS5 sing 1012 n n C31 C32 NS5 sing 1013 n n C31 C33 NS5 sing 1014 n n C32 H321 NS5 sing 1015 n n C32 H322 NS5 sing 1016 n n C32 H323 NS5 sing 1017 n n C33 C34 NS5 sing 1018 n n C33 H331 NS5 sing 1019 n n C33 H332 NS5 sing 1020 n n C34 C35 NS5 sing 1021 n n C34 H341 NS5 sing 1022 n n C34 H342 NS5 sing 1023 n n C35 C36 NS5 doub 1024 n n C35 H351 NS5 sing 1025 n n C36 CM3 NS5 sing 1026 n n C36 CM4 NS5 sing 1027 n n CM3 HM31 NS5 sing 1028 n n CM3 HM32 NS5 sing 1029 n n CM3 HM33 NS5 sing 1030 n n CM4 HM41 NS5 sing 1031 n n CM4 HM42 NS5 sing 1032 n n CM4 HM43 NS5 sing 1033 n n # _atom_sites.entry_id 5O4C _atom_sites.fract_transf_matrix[1][1] 0.004417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC C 1 401 401 HEC HEC . F 5 HEC C 1 402 402 HEC HEC . G 5 HEC C 1 403 403 HEC HEC . H 5 HEC C 1 404 404 HEC HEC . I 6 DGA C 1 405 1278 DGA DGA . J 7 SO4 C 1 406 7 SO4 SO4 . K 8 LDA H 1 701 701 LDA LDA . L 7 SO4 H 1 702 1 SO4 SO4 . M 7 SO4 H 1 703 10 SO4 SO4 . N 7 SO4 H 1 704 18 SO4 SO4 . O 7 SO4 H 1 705 21 SO4 SO4 . P 8 LDA H 1 706 1 LDA LDA . Q 8 LDA H 1 707 2 LDA LDA . R 9 HTO H 1 708 3 HTO HTO . S 10 BCB L 1 301 400 BCB BCB . T 10 BCB L 1 302 401 BCB BCB . U 11 BPB L 1 303 402 BPB BPB . V 8 LDA L 1 304 7 LDA LDA . W 9 HTO L 1 305 1 HTO HTO . X 12 FE2 M 1 401 500 FE2 FE2 . Y 13 MQ7 M 1 402 501 MQ7 MQ7 . Z 10 BCB M 1 403 400 BCB BCB . AA 10 BCB M 1 404 401 BCB BCB . BA 11 BPB M 1 405 402 BPB BPB . CA 14 NS5 M 1 406 600 NS5 NS5 . DA 7 SO4 M 1 407 3 SO4 SO4 . EA 7 SO4 M 1 408 5 SO4 SO4 . FA 7 SO4 M 1 409 6 SO4 SO4 . GA 7 SO4 M 1 410 9 SO4 SO4 . HA 7 SO4 M 1 411 15 SO4 SO4 . IA 7 SO4 M 1 412 19 SO4 SO4 . JA 7 SO4 M 1 413 20 SO4 SO4 . KA 15 HOH C 1 501 132 HOH HOH . KA 15 HOH C 2 502 67 HOH HOH . KA 15 HOH C 3 503 146 HOH HOH . LA 15 HOH H 1 801 140 HOH HOH . LA 15 HOH H 2 802 99 HOH HOH . MA 15 HOH L 1 401 52 HOH HOH . MA 15 HOH L 2 402 63 HOH HOH . MA 15 HOH L 3 403 41 HOH HOH . MA 15 HOH L 4 404 111 HOH HOH . NA 15 HOH M 1 501 42 HOH HOH . NA 15 HOH M 2 502 30 HOH HOH . NA 15 HOH M 3 503 110 HOH HOH . NA 15 HOH M 4 504 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NS5 . . . CA 14 14.346 -62.286 -0.301 1 140.35 ? C1 NS5 406 M 1 HETATM 2 C CM1 NS5 . . . CA 14 15.278 -61.13 -0.711 1 133.14 ? CM1 NS5 406 M 1 HETATM 3 C CM2 NS5 . . . CA 14 13.154 -62.411 -1.262 1 138.43 ? CM2 NS5 406 M 1 HETATM 4 C C2 NS5 . . . CA 14 15.072 -63.635 -0.098 1 136.11 ? C2 NS5 406 M 1 HETATM 5 C C3 NS5 . . . CA 14 15.338 -64.399 -1.4 1 141.08 ? C3 NS5 406 M 1 HETATM 6 C C4 NS5 . . . CA 14 16.135 -65.696 -1.214 1 141.24 ? C4 NS5 406 M 1 HETATM 7 C C5 NS5 . . . CA 14 15.933 -66.636 -2.406 1 143.22 ? C5 NS5 406 M 1 HETATM 8 C C6 NS5 . . . CA 14 15.918 -66.03 -3.791 1 136.12 ? C6 NS5 406 M 1 HETATM 9 C C7 NS5 . . . CA 14 15.76 -67.989 -2.321 1 139.67 ? C7 NS5 406 M 1 HETATM 10 C C8 NS5 . . . CA 14 15.75 -68.855 -1.059 1 128.27 ? C8 NS5 406 M 1 HETATM 11 C C9 NS5 . . . CA 14 14.337 -69.29 -0.644 1 115.78 ? C9 NS5 406 M 1 HETATM 12 C C10 NS5 . . . CA 14 13.805 -68.188 0.215 1 105.11 ? C10 NS5 406 M 1 HETATM 13 C C11 NS5 . . . CA 14 12.994 -67.094 -0.42 1 112.71 ? C11 NS5 406 M 1 HETATM 14 C C12 NS5 . . . CA 14 14.117 -68.225 1.508 1 96.51 ? C12 NS5 406 M 1 HETATM 15 C C13 NS5 . . . CA 14 13.734 -67.155 2.396 1 92.52 ? C13 NS5 406 M 1 HETATM 16 C C14 NS5 . . . CA 14 14.224 -67.172 3.623 1 93.88 ? C14 NS5 406 M 1 HETATM 17 C C15 NS5 . . . CA 14 13.991 -66.103 4.625 1 96.04 ? C15 NS5 406 M 1 HETATM 18 C C16 NS5 . . . CA 14 13.151 -64.878 4.347 1 94.15 ? C16 NS5 406 M 1 HETATM 19 C C17 NS5 . . . CA 14 14.639 -66.269 5.799 1 96.69 ? C17 NS5 406 M 1 HETATM 20 C C18 NS5 . . . CA 14 14.6 -65.279 6.845 1 93.56 ? C18 NS5 406 M 1 HETATM 21 C C19 NS5 . . . CA 14 15.281 -65.346 7.993 1 99.72 ? C19 NS5 406 M 1 HETATM 22 C C20 NS5 . . . CA 14 16.223 -66.377 8.489 1 84.62 ? C20 NS5 406 M 1 HETATM 23 C C21 NS5 . . . CA 14 17.048 -66.131 9.549 1 87.91 ? C21 NS5 406 M 1 HETATM 24 C C22 NS5 . . . CA 14 16.998 -64.853 10.35 1 94.66 ? C22 NS5 406 M 1 HETATM 25 C C23 NS5 . . . CA 14 18.065 -67.14 9.977 1 92.49 ? C23 NS5 406 M 1 HETATM 26 C C24 NS5 . . . CA 14 19.159 -66.852 10.711 1 89.38 ? C24 NS5 406 M 1 HETATM 27 C C25 NS5 . . . CA 14 20.15 -67.916 10.976 1 89.75 ? C25 NS5 406 M 1 HETATM 28 C C26 NS5 . . . CA 14 21.415 -67.742 11.434 1 89.59 ? C26 NS5 406 M 1 HETATM 29 C C27 NS5 . . . CA 14 21.971 -66.412 11.861 1 91.07 ? C27 NS5 406 M 1 HETATM 30 C C28 NS5 . . . CA 14 22.268 -68.951 11.574 1 89.49 ? C28 NS5 406 M 1 HETATM 31 C C29 NS5 . . . CA 14 23.508 -68.915 12.074 1 93.33 ? C29 NS5 406 M 1 HETATM 32 C C30 NS5 . . . CA 14 24.297 -70.144 12.154 1 100.53 ? C30 NS5 406 M 1 HETATM 33 C C31 NS5 . . . CA 14 25.616 -70.198 12.476 1 106.37 ? C31 NS5 406 M 1 HETATM 34 C C32 NS5 . . . CA 14 26.453 -69.004 12.841 1 98.33 ? C32 NS5 406 M 1 HETATM 35 C C33 NS5 . . . CA 14 26.318 -71.539 12.465 1 112.69 ? C33 NS5 406 M 1 HETATM 36 C C34 NS5 . . . CA 14 26.823 -71.908 13.856 1 120.67 ? C34 NS5 406 M 1 HETATM 37 C C35 NS5 . . . CA 14 26.835 -73.423 14.098 1 134.55 ? C35 NS5 406 M 1 HETATM 38 C C36 NS5 . . . CA 14 28.189 -74.097 13.835 1 136 ? C36 NS5 406 M 1 HETATM 39 C CM3 NS5 . . . CA 14 29.086 -74.051 15.079 1 126.22 ? CM3 NS5 406 M 1 HETATM 40 C CM4 NS5 . . . CA 14 27.983 -75.53 13.324 1 125.54 ? CM4 NS5 406 M 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 40 #