data_5O54 # _model_server_result.job_id 3zbnCveEf_fj8mQY2ICYsQ _model_server_result.datetime_utc '2024-11-26 22:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5O54 # _exptl.entry_id 5O54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.317 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(5-phenyl-4~{H}-1,2,4-triazol-3-yl)oxane-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O54 _cell.length_a 127.862 _cell.length_b 127.862 _cell.length_c 115.731 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 115.731 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.443 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H18 N4 O4' _chem_comp.formula_weight 306.317 _chem_comp.id 9LB _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(5-phenyl-4~{H}-1,2,4-triazol-3-yl)oxane-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5O54 _atom_sites.fract_transf_matrix[1][1] 0.007821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 901 903 PLP PLP . C 3 9LB A 1 902 1 9LB 29a . D 4 IMP A 1 903 920 IMP IMP . E 5 HOH A 1 1001 280 HOH HOH . E 5 HOH A 2 1002 12 HOH HOH . E 5 HOH A 3 1003 240 HOH HOH . E 5 HOH A 4 1004 267 HOH HOH . E 5 HOH A 5 1005 107 HOH HOH . E 5 HOH A 6 1006 112 HOH HOH . E 5 HOH A 7 1007 232 HOH HOH . E 5 HOH A 8 1008 40 HOH HOH . E 5 HOH A 9 1009 129 HOH HOH . E 5 HOH A 10 1010 18 HOH HOH . E 5 HOH A 11 1011 105 HOH HOH . E 5 HOH A 12 1012 68 HOH HOH . E 5 HOH A 13 1013 118 HOH HOH . E 5 HOH A 14 1014 71 HOH HOH . E 5 HOH A 15 1015 127 HOH HOH . E 5 HOH A 16 1016 43 HOH HOH . E 5 HOH A 17 1017 96 HOH HOH . E 5 HOH A 18 1018 142 HOH HOH . E 5 HOH A 19 1019 46 HOH HOH . E 5 HOH A 20 1020 54 HOH HOH . E 5 HOH A 21 1021 73 HOH HOH . E 5 HOH A 22 1022 162 HOH HOH . E 5 HOH A 23 1023 80 HOH HOH . E 5 HOH A 24 1024 125 HOH HOH . E 5 HOH A 25 1025 287 HOH HOH . E 5 HOH A 26 1026 108 HOH HOH . E 5 HOH A 27 1027 222 HOH HOH . E 5 HOH A 28 1028 82 HOH HOH . E 5 HOH A 29 1029 66 HOH HOH . E 5 HOH A 30 1030 163 HOH HOH . E 5 HOH A 31 1031 278 HOH HOH . E 5 HOH A 32 1032 166 HOH HOH . E 5 HOH A 33 1033 61 HOH HOH . E 5 HOH A 34 1034 20 HOH HOH . E 5 HOH A 35 1035 198 HOH HOH . E 5 HOH A 36 1036 139 HOH HOH . E 5 HOH A 37 1037 283 HOH HOH . E 5 HOH A 38 1038 86 HOH HOH . E 5 HOH A 39 1039 39 HOH HOH . E 5 HOH A 40 1040 135 HOH HOH . E 5 HOH A 41 1041 269 HOH HOH . E 5 HOH A 42 1042 62 HOH HOH . E 5 HOH A 43 1043 291 HOH HOH . E 5 HOH A 44 1044 170 HOH HOH . E 5 HOH A 45 1045 78 HOH HOH . E 5 HOH A 46 1046 15 HOH HOH . E 5 HOH A 47 1047 150 HOH HOH . E 5 HOH A 48 1048 200 HOH HOH . E 5 HOH A 49 1049 16 HOH HOH . E 5 HOH A 50 1050 176 HOH HOH . E 5 HOH A 51 1051 250 HOH HOH . E 5 HOH A 52 1052 52 HOH HOH . E 5 HOH A 53 1053 121 HOH HOH . E 5 HOH A 54 1054 249 HOH HOH . E 5 HOH A 55 1055 97 HOH HOH . E 5 HOH A 56 1056 128 HOH HOH . E 5 HOH A 57 1057 32 HOH HOH . E 5 HOH A 58 1058 116 HOH HOH . E 5 HOH A 59 1059 189 HOH HOH . E 5 HOH A 60 1060 99 HOH HOH . E 5 HOH A 61 1061 130 HOH HOH . E 5 HOH A 62 1062 84 HOH HOH . E 5 HOH A 63 1063 137 HOH HOH . E 5 HOH A 64 1064 202 HOH HOH . E 5 HOH A 65 1065 231 HOH HOH . E 5 HOH A 66 1066 114 HOH HOH . E 5 HOH A 67 1067 149 HOH HOH . E 5 HOH A 68 1068 3 HOH HOH . E 5 HOH A 69 1069 10 HOH HOH . E 5 HOH A 70 1070 115 HOH HOH . E 5 HOH A 71 1071 205 HOH HOH . E 5 HOH A 72 1072 146 HOH HOH . E 5 HOH A 73 1073 210 HOH HOH . E 5 HOH A 74 1074 89 HOH HOH . E 5 HOH A 75 1075 288 HOH HOH . E 5 HOH A 76 1076 110 HOH HOH . E 5 HOH A 77 1077 76 HOH HOH . E 5 HOH A 78 1078 67 HOH HOH . E 5 HOH A 79 1079 41 HOH HOH . E 5 HOH A 80 1080 70 HOH HOH . E 5 HOH A 81 1081 111 HOH HOH . E 5 HOH A 82 1082 104 HOH HOH . E 5 HOH A 83 1083 19 HOH HOH . E 5 HOH A 84 1084 251 HOH HOH . E 5 HOH A 85 1085 95 HOH HOH . E 5 HOH A 86 1086 218 HOH HOH . E 5 HOH A 87 1087 168 HOH HOH . E 5 HOH A 88 1088 154 HOH HOH . E 5 HOH A 89 1089 247 HOH HOH . E 5 HOH A 90 1090 211 HOH HOH . E 5 HOH A 91 1091 33 HOH HOH . E 5 HOH A 92 1092 26 HOH HOH . E 5 HOH A 93 1093 169 HOH HOH . E 5 HOH A 94 1094 9 HOH HOH . E 5 HOH A 95 1095 117 HOH HOH . E 5 HOH A 96 1096 83 HOH HOH . E 5 HOH A 97 1097 44 HOH HOH . E 5 HOH A 98 1098 65 HOH HOH . E 5 HOH A 99 1099 165 HOH HOH . E 5 HOH A 100 1100 36 HOH HOH . E 5 HOH A 101 1101 204 HOH HOH . E 5 HOH A 102 1102 94 HOH HOH . E 5 HOH A 103 1103 133 HOH HOH . E 5 HOH A 104 1104 158 HOH HOH . E 5 HOH A 105 1105 182 HOH HOH . E 5 HOH A 106 1106 27 HOH HOH . E 5 HOH A 107 1107 30 HOH HOH . E 5 HOH A 108 1108 25 HOH HOH . E 5 HOH A 109 1109 81 HOH HOH . E 5 HOH A 110 1110 109 HOH HOH . E 5 HOH A 111 1111 187 HOH HOH . E 5 HOH A 112 1112 190 HOH HOH . E 5 HOH A 113 1113 77 HOH HOH . E 5 HOH A 114 1114 136 HOH HOH . E 5 HOH A 115 1115 131 HOH HOH . E 5 HOH A 116 1116 103 HOH HOH . E 5 HOH A 117 1117 213 HOH HOH . E 5 HOH A 118 1118 49 HOH HOH . E 5 HOH A 119 1119 221 HOH HOH . E 5 HOH A 120 1120 160 HOH HOH . E 5 HOH A 121 1121 29 HOH HOH . E 5 HOH A 122 1122 6 HOH HOH . E 5 HOH A 123 1123 75 HOH HOH . E 5 HOH A 124 1124 152 HOH HOH . E 5 HOH A 125 1125 21 HOH HOH . E 5 HOH A 126 1126 134 HOH HOH . E 5 HOH A 127 1127 119 HOH HOH . E 5 HOH A 128 1128 145 HOH HOH . E 5 HOH A 129 1129 47 HOH HOH . E 5 HOH A 130 1130 24 HOH HOH . E 5 HOH A 131 1131 51 HOH HOH . E 5 HOH A 132 1132 69 HOH HOH . E 5 HOH A 133 1133 175 HOH HOH . E 5 HOH A 134 1134 153 HOH HOH . E 5 HOH A 135 1135 7 HOH HOH . E 5 HOH A 136 1136 209 HOH HOH . E 5 HOH A 137 1137 194 HOH HOH . E 5 HOH A 138 1138 42 HOH HOH . E 5 HOH A 139 1139 17 HOH HOH . E 5 HOH A 140 1140 120 HOH HOH . E 5 HOH A 141 1141 45 HOH HOH . E 5 HOH A 142 1142 126 HOH HOH . E 5 HOH A 143 1143 90 HOH HOH . E 5 HOH A 144 1144 4 HOH HOH . E 5 HOH A 145 1145 87 HOH HOH . E 5 HOH A 146 1146 201 HOH HOH . E 5 HOH A 147 1147 79 HOH HOH . E 5 HOH A 148 1148 171 HOH HOH . E 5 HOH A 149 1149 60 HOH HOH . E 5 HOH A 150 1150 88 HOH HOH . E 5 HOH A 151 1151 102 HOH HOH . E 5 HOH A 152 1152 53 HOH HOH . E 5 HOH A 153 1153 64 HOH HOH . E 5 HOH A 154 1154 191 HOH HOH . E 5 HOH A 155 1155 173 HOH HOH . E 5 HOH A 156 1156 124 HOH HOH . E 5 HOH A 157 1157 72 HOH HOH . E 5 HOH A 158 1158 14 HOH HOH . E 5 HOH A 159 1159 100 HOH HOH . E 5 HOH A 160 1160 31 HOH HOH . E 5 HOH A 161 1161 93 HOH HOH . E 5 HOH A 162 1162 35 HOH HOH . E 5 HOH A 163 1163 143 HOH HOH . E 5 HOH A 164 1164 161 HOH HOH . E 5 HOH A 165 1165 183 HOH HOH . E 5 HOH A 166 1166 48 HOH HOH . E 5 HOH A 167 1167 91 HOH HOH . E 5 HOH A 168 1168 212 HOH HOH . E 5 HOH A 169 1169 59 HOH HOH . E 5 HOH A 170 1170 28 HOH HOH . E 5 HOH A 171 1171 178 HOH HOH . E 5 HOH A 172 1172 164 HOH HOH . E 5 HOH A 173 1173 123 HOH HOH . E 5 HOH A 174 1174 188 HOH HOH . E 5 HOH A 175 1175 50 HOH HOH . E 5 HOH A 176 1176 273 HOH HOH . E 5 HOH A 177 1177 192 HOH HOH . E 5 HOH A 178 1178 23 HOH HOH . E 5 HOH A 179 1179 92 HOH HOH . E 5 HOH A 180 1180 85 HOH HOH . E 5 HOH A 181 1181 8 HOH HOH . E 5 HOH A 182 1182 38 HOH HOH . E 5 HOH A 183 1183 13 HOH HOH . E 5 HOH A 184 1184 208 HOH HOH . E 5 HOH A 185 1185 151 HOH HOH . E 5 HOH A 186 1186 58 HOH HOH . E 5 HOH A 187 1187 196 HOH HOH . E 5 HOH A 188 1188 276 HOH HOH . E 5 HOH A 189 1189 63 HOH HOH . E 5 HOH A 190 1190 284 HOH HOH . E 5 HOH A 191 1191 156 HOH HOH . E 5 HOH A 192 1192 285 HOH HOH . E 5 HOH A 193 1193 56 HOH HOH . E 5 HOH A 194 1194 263 HOH HOH . E 5 HOH A 195 1195 266 HOH HOH . E 5 HOH A 196 1196 5 HOH HOH . E 5 HOH A 197 1197 22 HOH HOH . E 5 HOH A 198 1198 2 HOH HOH . E 5 HOH A 199 1199 138 HOH HOH . E 5 HOH A 200 1200 57 HOH HOH . E 5 HOH A 201 1201 167 HOH HOH . E 5 HOH A 202 1202 106 HOH HOH . E 5 HOH A 203 1203 11 HOH HOH . E 5 HOH A 204 1204 113 HOH HOH . E 5 HOH A 205 1205 1 HOH HOH . E 5 HOH A 206 1206 243 HOH HOH . E 5 HOH A 207 1207 181 HOH HOH . E 5 HOH A 208 1208 98 HOH HOH . E 5 HOH A 209 1209 37 HOH HOH . E 5 HOH A 210 1210 159 HOH HOH . E 5 HOH A 211 1211 216 HOH HOH . E 5 HOH A 212 1212 277 HOH HOH . E 5 HOH A 213 1213 172 HOH HOH . E 5 HOH A 214 1214 55 HOH HOH . E 5 HOH A 215 1215 257 HOH HOH . E 5 HOH A 216 1216 272 HOH HOH . E 5 HOH A 217 1217 157 HOH HOH . E 5 HOH A 218 1218 184 HOH HOH . E 5 HOH A 219 1219 286 HOH HOH . E 5 HOH A 220 1220 224 HOH HOH . E 5 HOH A 221 1221 122 HOH HOH . E 5 HOH A 222 1222 179 HOH HOH . E 5 HOH A 223 1223 271 HOH HOH . E 5 HOH A 224 1224 289 HOH HOH . E 5 HOH A 225 1225 74 HOH HOH . E 5 HOH A 226 1226 265 HOH HOH . E 5 HOH A 227 1227 233 HOH HOH . E 5 HOH A 228 1228 270 HOH HOH . E 5 HOH A 229 1229 262 HOH HOH . E 5 HOH A 230 1230 180 HOH HOH . E 5 HOH A 231 1231 34 HOH HOH . E 5 HOH A 232 1232 101 HOH HOH . E 5 HOH A 233 1233 148 HOH HOH . E 5 HOH A 234 1234 259 HOH HOH . E 5 HOH A 235 1235 260 HOH HOH . E 5 HOH A 236 1236 279 HOH HOH . E 5 HOH A 237 1237 258 HOH HOH . E 5 HOH A 238 1238 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6' 9LB . . . C 3 33.165 18.576 27.113 1 13.81 ? O6' 9LB 902 A 1 HETATM 2 C C6' 9LB . . . C 3 32.112 19.33 27.726 1 16.31 ? C6' 9LB 902 A 1 HETATM 3 C C5' 9LB . . . C 3 32.206 20.817 27.386 1 16.94 ? C5' 9LB 902 A 1 HETATM 4 C C4' 9LB . . . C 3 32.318 21.066 25.873 1 17.77 ? C4' 9LB 902 A 1 HETATM 5 O O4' 9LB . . . C 3 31.11 20.674 25.206 1 20.37 ? O4' 9LB 902 A 1 HETATM 6 C C3' 9LB . . . C 3 32.581 22.53 25.541 1 17.05 ? C3' 9LB 902 A 1 HETATM 7 O O3' 9LB . . . C 3 32.879 22.597 24.138 1 15.06 ? O3' 9LB 902 A 1 HETATM 8 O O5' 9LB . . . C 3 33.332 21.376 28.068 1 16.14 ? O5' 9LB 902 A 1 HETATM 9 C C1' 9LB . . . C 3 33.431 22.788 27.898 1 16.44 ? C1' 9LB 902 A 1 HETATM 10 C C2' 9LB . . . C 3 33.703 23.102 26.42 1 16.9 ? C2' 9LB 902 A 1 HETATM 11 N N2' 9LB . . . C 3 33.864 24.565 26.239 1 15.6 ? N2' 9LB 902 A 1 HETATM 12 C C1 9LB . . . C 3 34.518 23.297 28.765 1 17.86 ? C1 9LB 902 A 1 HETATM 13 N N2 9LB . . . C 3 35.814 23.3 28.476 1 16.29 ? N2 9LB 902 A 1 HETATM 14 N N3 9LB . . . C 3 36.552 23.853 29.507 1 15.58 ? N3 9LB 902 A 1 HETATM 15 C C4 9LB . . . C 3 35.644 24.187 30.448 1 17.4 ? C4 9LB 902 A 1 HETATM 16 N N5 9LB . . . C 3 34.404 23.849 29.994 1 18.02 ? N5 9LB 902 A 1 HETATM 17 C C6 9LB . . . C 3 35.962 24.82 31.762 1 17.06 ? C6 9LB 902 A 1 HETATM 18 C C7 9LB . . . C 3 37.272 25.205 32.049 1 16.85 ? C7 9LB 902 A 1 HETATM 19 C C8 9LB . . . C 3 37.569 25.798 33.271 1 18.03 ? C8 9LB 902 A 1 HETATM 20 C C9 9LB . . . C 3 36.572 26.01 34.219 1 17.84 ? C9 9LB 902 A 1 HETATM 21 C C10 9LB . . . C 3 35.264 25.627 33.936 1 19 ? C10 9LB 902 A 1 HETATM 22 C C11 9LB . . . C 3 34.96 25.031 32.714 1 17.31 ? C11 9LB 902 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 22 #